HEADER TRANSPORT PROTEIN 03-MAY-18 6GGP TITLE STRUCTURE OF THE LIGAND-FREE FORM OF TRUNCATED ARGBP (RESIDUES 20-233) TITLE 2 FROM T. MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINO ACID ABC TRANSPORTER, PERIPLASMIC AMINO ACID-BINDING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 GENE: TM_0593; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOMAIN SWAPPING, BIOSENSORS, ARGININEMIA DIAGNOSIS, PROTEIN KEYWDS 2 STRUCTURE-STABILITY, CALORIMETRY., TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.SMALDONE,R.BERISIO,N.BALASCO,S.D'AURIA,L.VITAGLIANO,A.RUGGIERO REVDAT 3 17-JAN-24 6GGP 1 REMARK REVDAT 2 20-JUN-18 6GGP 1 JRNL REVDAT 1 13-JUN-18 6GGP 0 JRNL AUTH G.SMALDONE,R.BERISIO,N.BALASCO,S.D'AURIA,L.VITAGLIANO, JRNL AUTH 2 A.RUGGIERO JRNL TITL DOMAIN SWAPPING DISSECTION IN THERMOTOGA MARITIMA ARGININE JRNL TITL 2 BINDING PROTEIN: HOW STRUCTURAL FLEXIBILITY MAY COMPENSATE JRNL TITL 3 DESTABILIZATION. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1866 952 2018 JRNL REFN ISSN 0006-3002 JRNL PMID 29860047 JRNL DOI 10.1016/J.BBAPAP.2018.05.016 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 103364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.900 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6602 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1839 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1276 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2521 ; 2.183 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3154 ; 1.134 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;29.250 ;24.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;12.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.454 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2080 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 382 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1142 ; 1.962 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 463 ; 0.982 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1887 ; 2.849 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 697 ; 4.410 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 613 ; 6.133 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3115 ; 2.118 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 480 ;12.697 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3065 ; 4.733 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9464 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.030 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GREW IN 16-20 MG/ML PROTEIN REMARK 280 SOLUTION AND IN 30 % W/V PEG 8,000, 0.1 M SODIUM CACODYLATE REMARK 280 TRIHYDRATE (PH 6.5) AND 0.2 M SODIUM ACETATE TRIHYDRATE., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.35350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.19300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.53150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.19300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.35350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.53150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 638 O HOH A 715 2.06 REMARK 500 OD1 ASP A 113 O HOH A 301 2.08 REMARK 500 O ALA A 114 O HOH A 302 2.10 REMARK 500 O HOH A 308 O HOH A 620 2.11 REMARK 500 OE2 GLU A 207 O HOH A 303 2.17 REMARK 500 O HOH A 740 O HOH A 770 2.18 REMARK 500 OG SER A 184 O HOH A 304 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 579 O HOH A 644 2545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 99 CD GLU A 99 OE1 0.079 REMARK 500 GLU A 100 CG GLU A 100 CD 0.130 REMARK 500 PHE A 112 CB PHE A 112 CG -0.117 REMARK 500 ASP A 113 CB ASP A 113 CG 0.164 REMARK 500 LYS A 122 CE LYS A 122 NZ 0.345 REMARK 500 VAL A 159 CB VAL A 159 CG2 -0.182 REMARK 500 ARG A 188 CZ ARG A 188 NH2 0.129 REMARK 500 VAL A 198 CB VAL A 198 CG2 -0.204 REMARK 500 GLN A 208 CA GLN A 208 CB 0.143 REMARK 500 GLU A 222 CG GLU A 222 CD 0.158 REMARK 500 GLU A 222 CD GLU A 222 OE1 0.075 REMARK 500 GLU A 222 CD GLU A 222 OE2 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 PHE A 112 O - C - N ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 113 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 121 NH1 - CZ - NH2 ANGL. DEV. = -19.5 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 167 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 176 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 93 48.23 -157.22 REMARK 500 ASP A 113 79.64 -109.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GGP A 20 231 UNP Q9WZ62 Q9WZ62_THEMA 20 231 SEQRES 1 A 212 ALA ILE ASP GLU ILE LYS SER ARG GLY TYR LEU LEU VAL SEQRES 2 A 212 GLY LEU SER ALA ASP PHE PRO PRO PHE GLU PHE VAL ASP SEQRES 3 A 212 GLU ASN GLY ASN ILE VAL GLY PHE ASP VAL ASP LEU ALA SEQRES 4 A 212 LYS GLU ILE ALA ARG ARG LEU GLY VAL GLU LEU LYS ILE SEQRES 5 A 212 VAL ASP MET THR PHE ASP GLY LEU ILE PRO SER LEU LEU SEQRES 6 A 212 THR LYS LYS ILE ASP VAL ILE ILE SER GLY MET THR ILE SEQRES 7 A 212 THR GLU GLU ARG LYS LYS VAL VAL ALA PHE SER ASP PRO SEQRES 8 A 212 TYR PHE ASP ALA GLY GLN VAL ILE VAL VAL ARG LYS ASP SEQRES 9 A 212 SER ASP PHE ARG PRO LYS THR TYR GLU ASP LEU VAL GLY SEQRES 10 A 212 LYS THR VAL ALA VAL GLN ILE GLY THR THR GLY ASP ILE SEQRES 11 A 212 GLU VAL SER LYS TYR ASP GLY ILE LYS VAL VAL ARG PHE SEQRES 12 A 212 ASP LYS PHE THR ASP ALA PHE LEU GLU LEU LYS ARG GLY SEQRES 13 A 212 ARG ALA ASP ALA VAL VAL LEU ASP SER ALA THR ALA ARG SEQRES 14 A 212 ALA PHE VAL ALA LYS ASN PRO ASP LEU VAL ILE SER SER SEQRES 15 A 212 GLY VAL LEU SER SER GLU GLN TYR GLY ILE ALA VAL ARG SEQRES 16 A 212 LYS GLU ASP THR ASP LEU LEU GLU PHE ILE ASN SER VAL SEQRES 17 A 212 LEU ARG GLU LEU FORMUL 2 HOH *471(H2 O) HELIX 1 AA1 ALA A 20 GLY A 28 1 9 HELIX 2 AA2 GLY A 52 GLY A 66 1 15 HELIX 3 AA3 THR A 75 ASP A 77 5 3 HELIX 4 AA4 GLY A 78 THR A 85 1 8 HELIX 5 AA5 THR A 98 LYS A 103 1 6 HELIX 6 AA6 THR A 130 VAL A 135 5 6 HELIX 7 AA7 THR A 145 LYS A 153 1 9 HELIX 8 AA8 LYS A 164 ARG A 174 1 11 HELIX 9 AA9 SER A 184 ASN A 194 1 11 HELIX 10 AB1 ASP A 217 LEU A 231 1 15 SHEET 1 AA1 5 GLU A 68 ASP A 73 0 SHEET 2 AA1 5 TYR A 29 LEU A 34 1 N LEU A 30 O LYS A 70 SHEET 3 AA1 5 VAL A 90 ILE A 91 1 O VAL A 90 N GLY A 33 SHEET 4 AA1 5 ALA A 212 VAL A 213 -1 O ALA A 212 N ILE A 91 SHEET 5 AA1 5 ALA A 106 PHE A 107 -1 N ALA A 106 O VAL A 213 SHEET 1 AA2 3 ASP A 37 PHE A 38 0 SHEET 2 AA2 3 GLU A 42 VAL A 44 -1 O GLU A 42 N PHE A 38 SHEET 3 AA2 3 ILE A 50 VAL A 51 -1 O VAL A 51 N PHE A 43 SHEET 1 AA3 5 LYS A 158 PHE A 162 0 SHEET 2 AA3 5 THR A 138 GLN A 142 1 N VAL A 139 O LYS A 158 SHEET 3 AA3 5 ALA A 179 ASP A 183 1 O ALA A 179 N ALA A 140 SHEET 4 AA3 5 PHE A 112 ARG A 121 -1 N VAL A 119 O VAL A 180 SHEET 5 AA3 5 LEU A 197 ILE A 199 -1 O VAL A 198 N VAL A 120 SHEET 1 AA4 5 LYS A 158 PHE A 162 0 SHEET 2 AA4 5 THR A 138 GLN A 142 1 N VAL A 139 O LYS A 158 SHEET 3 AA4 5 ALA A 179 ASP A 183 1 O ALA A 179 N ALA A 140 SHEET 4 AA4 5 PHE A 112 ARG A 121 -1 N VAL A 119 O VAL A 180 SHEET 5 AA4 5 LEU A 204 TYR A 209 -1 O LEU A 204 N GLN A 116 CISPEP 1 PRO A 39 PRO A 40 0 -2.38 CRYST1 34.707 71.063 88.386 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011314 0.00000