HEADER PROTEIN BINDING 07-MAY-18 6GHD TITLE STRUCTURAL ANALYSIS OF THE TERNARY COMPLEX BETWEEN LAMIN A/C, BAF AND TITLE 2 EMERIN IDENTIFIES AN INTERFACE DISRUPTED IN AUTOSOMAL RECESSIVE TITLE 3 PROGEROID DISEASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMERIN; COMPND 3 CHAIN: G, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BARRIER-TO-AUTOINTEGRATION FACTOR; COMPND 7 CHAIN: D, E, A, C; COMPND 8 SYNONYM: BREAKPOINT CLUSTER REGION PROTEIN 1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PRELAMIN-A/C; COMPND 12 CHAIN: B, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EMD, EDMD, STA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BANF1, BAF, BCRG1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: LMNA, LMN1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR ENVELOPE, GENE EXPRESSION, TERNARY COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.SAMSON,A.PETITALOT,F.CELLI,I.HERRADA,V.ROPARS,M.H.LEDU,N.NHIRI, AUTHOR 2 A.A.ARTENI,B.BUENDIA,S.ZINNJUSTIN REVDAT 4 17-JAN-24 6GHD 1 REMARK REVDAT 3 14-NOV-18 6GHD 1 JRNL REVDAT 2 29-AUG-18 6GHD 1 JRNL REVDAT 1 08-AUG-18 6GHD 0 JRNL AUTH C.SAMSON,A.PETITALOT,F.CELLI,I.HERRADA,V.ROPARS,M.H.LE DU, JRNL AUTH 2 N.NHIRI,E.JACQUET,A.A.ARTENI,B.BUENDIA,S.ZINN-JUSTIN JRNL TITL STRUCTURAL ANALYSIS OF THE TERNARY COMPLEX BETWEEN LAMIN JRNL TITL 2 A/C, BAF AND EMERIN IDENTIFIES AN INTERFACE DISRUPTED IN JRNL TITL 3 AUTOSOMAL RECESSIVE PROGEROID DISEASES. JRNL REF NUCLEIC ACIDS RES. V. 46 10460 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30137533 JRNL DOI 10.1093/NAR/GKY736 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 83934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1654 - 6.5203 0.97 2697 143 0.1411 0.1699 REMARK 3 2 6.5203 - 5.1772 0.99 2721 141 0.1588 0.2078 REMARK 3 3 5.1772 - 4.5233 0.96 2689 142 0.1292 0.1977 REMARK 3 4 4.5233 - 4.1099 0.96 2651 138 0.1268 0.1537 REMARK 3 5 4.1099 - 3.8155 0.94 2631 137 0.1391 0.2090 REMARK 3 6 3.8155 - 3.5906 0.96 2673 143 0.1490 0.2270 REMARK 3 7 3.5906 - 3.4108 0.96 2631 139 0.1598 0.2184 REMARK 3 8 3.4108 - 3.2624 0.97 2711 144 0.1691 0.2073 REMARK 3 9 3.2624 - 3.1368 0.97 2658 139 0.1838 0.2314 REMARK 3 10 3.1368 - 3.0286 0.97 2695 146 0.1885 0.2571 REMARK 3 11 3.0286 - 2.9339 0.97 2698 142 0.1786 0.2335 REMARK 3 12 2.9339 - 2.8500 0.96 2687 143 0.1884 0.2674 REMARK 3 13 2.8500 - 2.7750 0.97 2650 140 0.2104 0.2845 REMARK 3 14 2.7750 - 2.7073 0.96 2694 143 0.2302 0.3353 REMARK 3 15 2.7073 - 2.6458 0.96 2678 138 0.2301 0.3023 REMARK 3 16 2.6458 - 2.5895 0.96 2604 138 0.2498 0.2974 REMARK 3 17 2.5895 - 2.5377 0.96 2732 143 0.2471 0.3122 REMARK 3 18 2.5377 - 2.4898 0.96 2584 135 0.2579 0.2756 REMARK 3 19 2.4898 - 2.4453 0.95 2722 141 0.2583 0.3241 REMARK 3 20 2.4453 - 2.4039 0.96 2597 136 0.2731 0.3086 REMARK 3 21 2.4039 - 2.3651 0.95 2711 141 0.2950 0.3702 REMARK 3 22 2.3651 - 2.3287 0.95 2586 134 0.2968 0.3589 REMARK 3 23 2.3287 - 2.2945 0.93 2644 139 0.3064 0.3360 REMARK 3 24 2.2945 - 2.2621 0.95 2587 136 0.2982 0.3125 REMARK 3 25 2.2621 - 2.2316 0.95 2589 137 0.3163 0.3108 REMARK 3 26 2.2316 - 2.2026 0.95 2766 140 0.3135 0.3670 REMARK 3 27 2.2026 - 2.1751 0.95 2494 132 0.3216 0.3934 REMARK 3 28 2.1751 - 2.1489 0.94 2660 141 0.3422 0.3716 REMARK 3 29 2.1489 - 2.1239 0.95 2684 139 0.3688 0.3760 REMARK 3 30 2.1239 - 2.1000 0.95 2623 137 0.3809 0.4908 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5490 REMARK 3 ANGLE : 0.929 7397 REMARK 3 CHIRALITY : 0.054 779 REMARK 3 PLANARITY : 0.006 962 REMARK 3 DIHEDRAL : 16.969 3262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 1 THROUGH 45) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0664 -54.3347 -11.6602 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.2097 REMARK 3 T33: 0.2946 T12: -0.0454 REMARK 3 T13: -0.0082 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 7.3328 L22: 6.0372 REMARK 3 L33: 6.3238 L12: 1.9550 REMARK 3 L13: 0.1515 L23: -0.8447 REMARK 3 S TENSOR REMARK 3 S11: 0.3161 S12: -0.2213 S13: -0.6317 REMARK 3 S21: 0.3268 S22: -0.1591 S23: -0.0105 REMARK 3 S31: 0.9096 S32: -0.4144 S33: -0.1157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 3 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0457 -33.2013 -3.0591 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.2292 REMARK 3 T33: 0.2015 T12: 0.0155 REMARK 3 T13: 0.0248 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 5.2375 L22: 4.8451 REMARK 3 L33: 5.0068 L12: 2.2401 REMARK 3 L13: -0.8615 L23: 0.6893 REMARK 3 S TENSOR REMARK 3 S11: 0.1915 S12: -0.2598 S13: 0.1621 REMARK 3 S21: 0.1790 S22: -0.1480 S23: 0.1379 REMARK 3 S31: -0.0814 S32: -0.1383 S33: -0.0414 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 428 THROUGH 546) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0914 -13.7589 -17.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.3226 T22: 0.2559 REMARK 3 T33: 0.2363 T12: 0.0010 REMARK 3 T13: 0.0017 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.3483 L22: 2.6347 REMARK 3 L33: 4.9294 L12: -0.0256 REMARK 3 L13: 0.6592 L23: 0.1371 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: 0.1022 S13: 0.2152 REMARK 3 S21: -0.1290 S22: -0.0089 S23: -0.0119 REMARK 3 S31: -0.5224 S32: 0.1075 S33: 0.0939 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 2 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3008 -44.3476 -13.1617 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.2786 REMARK 3 T33: 0.2198 T12: 0.0792 REMARK 3 T13: -0.0295 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.7904 L22: 6.4309 REMARK 3 L33: 3.8006 L12: 0.0898 REMARK 3 L13: -0.7837 L23: 0.2669 REMARK 3 S TENSOR REMARK 3 S11: 0.1448 S12: 0.1115 S13: -0.1827 REMARK 3 S21: -0.0929 S22: -0.1329 S23: -0.2549 REMARK 3 S31: 0.1803 S32: 0.3354 S33: -0.0031 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1239 -14.5217 14.6154 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.2311 REMARK 3 T33: 0.2404 T12: 0.0601 REMARK 3 T13: 0.0274 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 6.3875 L22: 3.0872 REMARK 3 L33: 5.1594 L12: 0.4793 REMARK 3 L13: 0.0124 L23: -1.4616 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: -0.0019 S13: -0.2972 REMARK 3 S21: -0.1644 S22: -0.2107 S23: -0.2862 REMARK 3 S31: 0.3295 S32: 0.4667 S33: 0.0594 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 3 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1596 2.1436 5.6773 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.2240 REMARK 3 T33: 0.1988 T12: 0.0239 REMARK 3 T13: 0.0095 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 4.2376 L22: 5.9738 REMARK 3 L33: 6.3343 L12: 1.9301 REMARK 3 L13: 0.0026 L23: -1.2548 REMARK 3 S TENSOR REMARK 3 S11: -0.1144 S12: 0.1544 S13: 0.1489 REMARK 3 S21: -0.0774 S22: 0.1910 S23: 0.2312 REMARK 3 S31: -0.1245 S32: -0.1629 S33: -0.0611 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 429 THROUGH 546) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9791 -18.4551 20.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.2552 REMARK 3 T33: 0.2247 T12: 0.0172 REMARK 3 T13: -0.0100 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.7817 L22: 2.7750 REMARK 3 L33: 4.0341 L12: 0.2120 REMARK 3 L13: -0.6311 L23: 0.1819 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.0264 S13: 0.0128 REMARK 3 S21: -0.0871 S22: 0.0162 S23: 0.1081 REMARK 3 S31: 0.1011 S32: -0.2536 S33: 0.0393 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 2 THROUGH 44) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6989 9.3206 13.7761 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.3342 REMARK 3 T33: 0.2763 T12: -0.0620 REMARK 3 T13: 0.0163 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 5.5390 L22: 7.9790 REMARK 3 L33: 6.1946 L12: 3.6359 REMARK 3 L13: 0.2333 L23: 0.9603 REMARK 3 S TENSOR REMARK 3 S11: -0.1885 S12: 0.2099 S13: 0.0742 REMARK 3 S21: -0.3640 S22: 0.1523 S23: -0.6616 REMARK 3 S31: -0.6188 S32: 0.7925 S33: 0.0528 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN G AND (RESID 2 THROUGH 10 OR REMARK 3 (RESID 11 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 12 REMARK 3 THROUGH 44)) REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 432 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 429 THROUGH 452 OR REMARK 3 RESID 454 THROUGH 546)) REMARK 3 SELECTION : (CHAIN F AND (RESID 429 THROUGH 452 OR REMARK 3 RESID 454 THROUGH 546)) REMARK 3 ATOM PAIRS NUMBER : 1102 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 3 THROUGH 89) REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 1703 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 3 THROUGH 89) REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1703 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 3 THROUGH 89) REMARK 3 SELECTION : (CHAIN E AND RESID 3 THROUGH 89) REMARK 3 ATOM PAIRS NUMBER : 1703 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200007625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9725 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : APEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.152 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.520 REMARK 200 R MERGE (I) : 0.11730 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79550 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BZF, 1IFR, 2ODC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3.350, 20MM TRIS-BISPH5.5, 30MM REMARK 280 NACL, 0.2M NH4SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, D, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR D 2 REMARK 465 THR C 2 REMARK 465 SER F 428 REMARK 465 GLY H 1 REMARK 465 ARG H 45 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU H 11 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU G 7 NH2 ARG G 31 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 429 -32.63 64.18 REMARK 500 SER B 507 79.65 -157.31 REMARK 500 SER F 507 79.17 -155.63 REMARK 500 ASN H 3 -13.90 104.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 101 DBREF 6GHD G 2 45 UNP P50402 EMD_HUMAN 2 45 DBREF 6GHD D 2 89 UNP O75531 BAF_HUMAN 2 89 DBREF 6GHD B 428 546 UNP P02545 LMNA_HUMAN 428 546 DBREF 6GHD E 2 89 UNP O75531 BAF_HUMAN 2 89 DBREF 6GHD A 2 89 UNP O75531 BAF_HUMAN 2 89 DBREF 6GHD C 2 89 UNP O75531 BAF_HUMAN 2 89 DBREF 6GHD F 428 546 UNP P02545 LMNA_HUMAN 428 546 DBREF 6GHD H 2 45 UNP P50402 EMD_HUMAN 2 45 SEQADV 6GHD GLY G 1 UNP P50402 EXPRESSION TAG SEQADV 6GHD ALA D 67 UNP O75531 CYS 67 ENGINEERED MUTATION SEQADV 6GHD ALA D 77 UNP O75531 CYS 77 ENGINEERED MUTATION SEQADV 6GHD ALA D 80 UNP O75531 CYS 80 ENGINEERED MUTATION SEQADV 6GHD ALA D 85 UNP O75531 CYS 85 ENGINEERED MUTATION SEQADV 6GHD ALA E 67 UNP O75531 CYS 67 ENGINEERED MUTATION SEQADV 6GHD ALA E 77 UNP O75531 CYS 77 ENGINEERED MUTATION SEQADV 6GHD ALA E 80 UNP O75531 CYS 80 ENGINEERED MUTATION SEQADV 6GHD ALA E 85 UNP O75531 CYS 85 ENGINEERED MUTATION SEQADV 6GHD ALA A 67 UNP O75531 CYS 67 ENGINEERED MUTATION SEQADV 6GHD ALA A 77 UNP O75531 CYS 77 ENGINEERED MUTATION SEQADV 6GHD ALA A 80 UNP O75531 CYS 80 ENGINEERED MUTATION SEQADV 6GHD ALA A 85 UNP O75531 CYS 85 ENGINEERED MUTATION SEQADV 6GHD ALA C 67 UNP O75531 CYS 67 ENGINEERED MUTATION SEQADV 6GHD ALA C 77 UNP O75531 CYS 77 ENGINEERED MUTATION SEQADV 6GHD ALA C 80 UNP O75531 CYS 80 ENGINEERED MUTATION SEQADV 6GHD ALA C 85 UNP O75531 CYS 85 ENGINEERED MUTATION SEQADV 6GHD GLY H 1 UNP P50402 EXPRESSION TAG SEQRES 1 G 45 GLY ASP ASN TYR ALA ASP LEU SER ASP THR GLU LEU THR SEQRES 2 G 45 THR LEU LEU ARG ARG TYR ASN ILE PRO HIS GLY PRO VAL SEQRES 3 G 45 VAL GLY SER THR ARG ARG LEU TYR GLU LYS LYS ILE PHE SEQRES 4 G 45 GLU TYR GLU THR GLN ARG SEQRES 1 D 88 THR THR SER GLN LYS HIS ARG ASP PHE VAL ALA GLU PRO SEQRES 2 D 88 MET GLY GLU LYS PRO VAL GLY SER LEU ALA GLY ILE GLY SEQRES 3 D 88 GLU VAL LEU GLY LYS LYS LEU GLU GLU ARG GLY PHE ASP SEQRES 4 D 88 LYS ALA TYR VAL VAL LEU GLY GLN PHE LEU VAL LEU LYS SEQRES 5 D 88 LYS ASP GLU ASP LEU PHE ARG GLU TRP LEU LYS ASP THR SEQRES 6 D 88 ALA GLY ALA ASN ALA LYS GLN SER ARG ASP ALA PHE GLY SEQRES 7 D 88 ALA LEU ARG GLU TRP ALA ASP ALA PHE LEU SEQRES 1 B 119 SER SER PHE SER GLN HIS ALA ARG THR SER GLY ARG VAL SEQRES 2 B 119 ALA VAL GLU GLU VAL ASP GLU GLU GLY LYS PHE VAL ARG SEQRES 3 B 119 LEU ARG ASN LYS SER ASN GLU ASP GLN SER MET GLY ASN SEQRES 4 B 119 TRP GLN ILE LYS ARG GLN ASN GLY ASP ASP PRO LEU LEU SEQRES 5 B 119 THR TYR ARG PHE PRO PRO LYS PHE THR LEU LYS ALA GLY SEQRES 6 B 119 GLN VAL VAL THR ILE TRP ALA ALA GLY ALA GLY ALA THR SEQRES 7 B 119 HIS SER PRO PRO THR ASP LEU VAL TRP LYS ALA GLN ASN SEQRES 8 B 119 THR TRP GLY CYS GLY ASN SER LEU ARG THR ALA LEU ILE SEQRES 9 B 119 ASN SER THR GLY GLU GLU VAL ALA MET ARG LYS LEU VAL SEQRES 10 B 119 ARG SER SEQRES 1 E 88 THR THR SER GLN LYS HIS ARG ASP PHE VAL ALA GLU PRO SEQRES 2 E 88 MET GLY GLU LYS PRO VAL GLY SER LEU ALA GLY ILE GLY SEQRES 3 E 88 GLU VAL LEU GLY LYS LYS LEU GLU GLU ARG GLY PHE ASP SEQRES 4 E 88 LYS ALA TYR VAL VAL LEU GLY GLN PHE LEU VAL LEU LYS SEQRES 5 E 88 LYS ASP GLU ASP LEU PHE ARG GLU TRP LEU LYS ASP THR SEQRES 6 E 88 ALA GLY ALA ASN ALA LYS GLN SER ARG ASP ALA PHE GLY SEQRES 7 E 88 ALA LEU ARG GLU TRP ALA ASP ALA PHE LEU SEQRES 1 A 88 THR THR SER GLN LYS HIS ARG ASP PHE VAL ALA GLU PRO SEQRES 2 A 88 MET GLY GLU LYS PRO VAL GLY SER LEU ALA GLY ILE GLY SEQRES 3 A 88 GLU VAL LEU GLY LYS LYS LEU GLU GLU ARG GLY PHE ASP SEQRES 4 A 88 LYS ALA TYR VAL VAL LEU GLY GLN PHE LEU VAL LEU LYS SEQRES 5 A 88 LYS ASP GLU ASP LEU PHE ARG GLU TRP LEU LYS ASP THR SEQRES 6 A 88 ALA GLY ALA ASN ALA LYS GLN SER ARG ASP ALA PHE GLY SEQRES 7 A 88 ALA LEU ARG GLU TRP ALA ASP ALA PHE LEU SEQRES 1 C 88 THR THR SER GLN LYS HIS ARG ASP PHE VAL ALA GLU PRO SEQRES 2 C 88 MET GLY GLU LYS PRO VAL GLY SER LEU ALA GLY ILE GLY SEQRES 3 C 88 GLU VAL LEU GLY LYS LYS LEU GLU GLU ARG GLY PHE ASP SEQRES 4 C 88 LYS ALA TYR VAL VAL LEU GLY GLN PHE LEU VAL LEU LYS SEQRES 5 C 88 LYS ASP GLU ASP LEU PHE ARG GLU TRP LEU LYS ASP THR SEQRES 6 C 88 ALA GLY ALA ASN ALA LYS GLN SER ARG ASP ALA PHE GLY SEQRES 7 C 88 ALA LEU ARG GLU TRP ALA ASP ALA PHE LEU SEQRES 1 F 119 SER SER PHE SER GLN HIS ALA ARG THR SER GLY ARG VAL SEQRES 2 F 119 ALA VAL GLU GLU VAL ASP GLU GLU GLY LYS PHE VAL ARG SEQRES 3 F 119 LEU ARG ASN LYS SER ASN GLU ASP GLN SER MET GLY ASN SEQRES 4 F 119 TRP GLN ILE LYS ARG GLN ASN GLY ASP ASP PRO LEU LEU SEQRES 5 F 119 THR TYR ARG PHE PRO PRO LYS PHE THR LEU LYS ALA GLY SEQRES 6 F 119 GLN VAL VAL THR ILE TRP ALA ALA GLY ALA GLY ALA THR SEQRES 7 F 119 HIS SER PRO PRO THR ASP LEU VAL TRP LYS ALA GLN ASN SEQRES 8 F 119 THR TRP GLY CYS GLY ASN SER LEU ARG THR ALA LEU ILE SEQRES 9 F 119 ASN SER THR GLY GLU GLU VAL ALA MET ARG LYS LEU VAL SEQRES 10 F 119 ARG SER SEQRES 1 H 45 GLY ASP ASN TYR ALA ASP LEU SER ASP THR GLU LEU THR SEQRES 2 H 45 THR LEU LEU ARG ARG TYR ASN ILE PRO HIS GLY PRO VAL SEQRES 3 H 45 VAL GLY SER THR ARG ARG LEU TYR GLU LYS LYS ILE PHE SEQRES 4 H 45 GLU TYR GLU THR GLN ARG HET SO4 G 101 5 HET SO4 D 101 5 HET SO4 D 102 5 HET SO4 E 101 5 HET SO4 E 102 5 HET SO4 A 101 5 HET EDO A 102 4 HET SO4 C 101 5 HET SO4 H 101 5 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 9 SO4 8(O4 S 2-) FORMUL 15 EDO C2 H6 O2 FORMUL 18 HOH *280(H2 O) HELIX 1 AA1 SER G 8 TYR G 19 1 12 HELIX 2 AA2 THR G 30 GLN G 44 1 15 HELIX 3 AA3 SER D 4 ALA D 12 1 9 HELIX 4 AA4 PRO D 19 LEU D 23 5 5 HELIX 5 AA5 GLY D 27 ARG D 37 1 11 HELIX 6 AA6 LYS D 41 LEU D 52 1 12 HELIX 7 AA7 ASP D 55 GLY D 68 1 14 HELIX 8 AA8 ASN D 70 LEU D 89 1 20 HELIX 9 AA9 GLY B 501 GLY B 503 5 3 HELIX 10 AB1 SER E 4 ALA E 12 1 9 HELIX 11 AB2 PRO E 19 LEU E 23 5 5 HELIX 12 AB3 GLY E 27 ARG E 37 1 11 HELIX 13 AB4 LYS E 41 LEU E 52 1 12 HELIX 14 AB5 ASP E 55 GLY E 68 1 14 HELIX 15 AB6 ASN E 70 LEU E 89 1 20 HELIX 16 AB7 SER A 4 ALA A 12 1 9 HELIX 17 AB8 PRO A 19 LEU A 23 5 5 HELIX 18 AB9 GLY A 27 ARG A 37 1 11 HELIX 19 AC1 LYS A 41 LEU A 52 1 12 HELIX 20 AC2 ASP A 55 GLY A 68 1 14 HELIX 21 AC3 ASN A 70 LEU A 89 1 20 HELIX 22 AC4 SER C 4 ALA C 12 1 9 HELIX 23 AC5 PRO C 19 LEU C 23 5 5 HELIX 24 AC6 GLY C 27 ARG C 37 1 11 HELIX 25 AC7 LYS C 41 LEU C 52 1 12 HELIX 26 AC8 ASP C 55 GLY C 68 1 14 HELIX 27 AC9 ASN C 70 LEU C 89 1 20 HELIX 28 AD1 GLY F 501 GLY F 503 5 3 HELIX 29 AD2 SER H 8 TYR H 19 1 12 HELIX 30 AD3 THR H 30 GLN H 44 1 15 SHEET 1 AA1 5 PHE B 430 THR B 436 0 SHEET 2 AA1 5 GLU B 537 ARG B 545 -1 O LYS B 542 N HIS B 433 SHEET 3 AA1 5 SER B 525 ILE B 531 -1 N LEU B 526 O LEU B 543 SHEET 4 AA1 5 GLN B 468 ASN B 473 -1 N GLN B 468 O ILE B 531 SHEET 5 AA1 5 LEU B 479 ARG B 482 -1 O LEU B 479 N ARG B 471 SHEET 1 AA2 4 VAL B 440 VAL B 445 0 SHEET 2 AA2 4 PHE B 451 ASN B 456 -1 O ARG B 453 N GLU B 444 SHEET 3 AA2 4 VAL B 494 ALA B 499 -1 O ILE B 497 N VAL B 452 SHEET 4 AA2 4 ASP B 511 TRP B 514 1 O TRP B 514 N TRP B 498 SHEET 1 AA3 2 GLN B 462 SER B 463 0 SHEET 2 AA3 2 THR B 488 LEU B 489 -1 O LEU B 489 N GLN B 462 SHEET 1 AA4 5 PHE F 430 THR F 436 0 SHEET 2 AA4 5 GLU F 537 ARG F 545 -1 O LYS F 542 N HIS F 433 SHEET 3 AA4 5 SER F 525 ILE F 531 -1 N LEU F 530 O VAL F 538 SHEET 4 AA4 5 GLN F 468 ASN F 473 -1 N GLN F 468 O ILE F 531 SHEET 5 AA4 5 LEU F 479 ARG F 482 -1 O LEU F 479 N ARG F 471 SHEET 1 AA5 4 VAL F 440 VAL F 445 0 SHEET 2 AA5 4 PHE F 451 ASN F 456 -1 O ARG F 455 N ALA F 441 SHEET 3 AA5 4 VAL F 494 ALA F 499 -1 O VAL F 495 N LEU F 454 SHEET 4 AA5 4 ASP F 511 TRP F 514 1 O TRP F 514 N TRP F 498 SHEET 1 AA6 2 GLN F 462 SER F 463 0 SHEET 2 AA6 2 THR F 488 LEU F 489 -1 O LEU F 489 N GLN F 462 CISPEP 1 PRO B 508 PRO B 509 0 5.48 CISPEP 2 PRO F 508 PRO F 509 0 5.83 SITE 1 AC1 5 ARG F 482 ARG G 17 HIS G 23 HOH G 201 SITE 2 AC1 5 HOH G 206 SITE 1 AC2 5 GLY D 27 GLU D 28 VAL D 29 LEU D 30 SITE 2 AC2 5 GLN D 73 SITE 1 AC3 2 ARG D 60 ARG D 75 SITE 1 AC4 8 SER E 4 LYS E 6 ALA E 24 GLY E 25 SITE 2 AC4 8 ASP E 76 HOH E 207 HOH E 211 HOH E 222 SITE 1 AC5 6 GLY C 27 GLU C 28 VAL C 29 ARG E 60 SITE 2 AC5 6 ARG E 75 HOH E 216 SITE 1 AC6 5 SER A 4 ALA A 24 GLY A 25 HOH A 203 SITE 2 AC6 5 HOH A 221 SITE 1 AC7 4 ARG A 60 ARG A 75 LYS D 6 HOH D 203 SITE 1 AC8 2 ARG C 60 ARG C 75 SITE 1 AC9 5 ARG B 482 ARG H 17 HIS H 23 HOH H 201 SITE 2 AC9 5 HOH H 208 CRYST1 57.770 62.750 64.340 66.44 66.55 88.05 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017310 -0.000589 -0.008005 0.00000 SCALE2 0.000000 0.015945 -0.007405 0.00000 SCALE3 0.000000 0.000000 0.018679 0.00000