HEADER MEMBRANE PROTEIN 08-MAY-18 6GHJ TITLE PEPTST IN COMPLEX WITH TRIPEPTIDE PHE-ALA-GLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DI-OR TRIPEPTIDE:H+ SYMPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHE-ALA-GLN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS (STRAIN ATCC BAA-250 SOURCE 3 / LMG 18311); SOURCE 4 ORGANISM_TAXID: 264199; SOURCE 5 STRAIN: ATCC BAA-250 / LMG 18311; SOURCE 6 GENE: DTPT, STU0970; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS MEMBRANE PROTEIN, MFS, POT, PEPTIDE TRANSPORTER EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ MOLLEDO,E.M.QUISTGAARD,C.LOEW REVDAT 3 17-JAN-24 6GHJ 1 LINK REVDAT 2 24-OCT-18 6GHJ 1 JRNL REVDAT 1 19-SEP-18 6GHJ 0 JRNL AUTH M.MARTINEZ MOLLEDO,E.M.QUISTGAARD,C.LOW JRNL TITL TRIPEPTIDE BINDING IN A PROTON-DEPENDENT OLIGOPEPTIDE JRNL TITL 2 TRANSPORTER. JRNL REF FEBS LETT. V. 592 3239 2018 JRNL REFN ISSN 1873-3468 JRNL PMID 30194725 JRNL DOI 10.1002/1873-3468.13246 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 4.8676 1.00 2899 153 0.1905 0.1905 REMARK 3 2 4.8676 - 3.8640 1.00 2791 147 0.1905 0.2370 REMARK 3 3 3.8640 - 3.3757 1.00 2764 146 0.1869 0.2411 REMARK 3 4 3.3757 - 3.0671 1.00 2776 146 0.1905 0.2569 REMARK 3 5 3.0671 - 2.8473 1.00 2731 143 0.1840 0.1988 REMARK 3 6 2.8473 - 2.6795 0.99 2739 145 0.1747 0.2396 REMARK 3 7 2.6795 - 2.5453 1.00 2727 143 0.1712 0.2026 REMARK 3 8 2.5453 - 2.4345 1.00 2731 144 0.1740 0.2018 REMARK 3 9 2.4345 - 2.3408 1.00 2724 143 0.1887 0.2422 REMARK 3 10 2.3408 - 2.2600 1.00 2708 143 0.1905 0.2317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3990 REMARK 3 ANGLE : 0.850 5342 REMARK 3 CHIRALITY : 0.048 592 REMARK 3 PLANARITY : 0.006 626 REMARK 3 DIHEDRAL : 12.378 2263 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9143 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 48.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OXO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.3 M HEPES BUFFER PH 7.5, 250 MM REMARK 280 AMMONIUM PHOSPHATE MONOBASIC (NH4H2PO4), PEG400 (15-25%), REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.80500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.11000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.80500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.77500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.11000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 272 REMARK 465 LYS A 273 REMARK 465 VAL A 274 REMARK 465 THR A 275 REMARK 465 SER A 276 REMARK 465 THR A 277 REMARK 465 GLU A 278 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 GLN A 350 REMARK 465 ALA A 415 REMARK 465 PRO A 416 REMARK 465 LYS A 417 REMARK 465 ALA A 418 REMARK 465 PHE A 419 REMARK 465 ASN A 420 REMARK 465 MET A 479 REMARK 465 GLN A 480 REMARK 465 GLY A 481 REMARK 465 VAL A 482 REMARK 465 GLU A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 50 69.20 -101.12 REMARK 500 ILE A 81 -57.66 -130.52 REMARK 500 TRP A 243 71.39 -101.52 REMARK 500 VAL A 304 -66.76 -126.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 504 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 316 O REMARK 620 2 SER A 316 OG 66.1 REMARK 620 3 PHE A 319 O 82.8 96.3 REMARK 620 4 HOH A 605 O 170.5 107.8 105.5 REMARK 620 5 HOH A 626 O 86.3 149.9 91.5 97.9 REMARK 620 6 HOH A 696 O 85.5 82.5 167.6 86.5 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78N A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78M A 520 DBREF 6GHJ A 1 483 UNP Q5M4H8 Q5M4H8_STRT2 1 483 DBREF 6GHJ B 1 3 PDB 6GHJ 6GHJ 1 3 SEQRES 1 A 483 MET GLU ASP LYS GLY LYS THR PHE PHE GLY GLN PRO LEU SEQRES 2 A 483 GLY LEU SER THR LEU PHE MET THR GLU MET TRP GLU ARG SEQRES 3 A 483 PHE SER TYR TYR GLY MET ARG ALA ILE LEU LEU TYR TYR SEQRES 4 A 483 MET TRP PHE LEU ILE SER THR GLY ASP LEU HIS ILE THR SEQRES 5 A 483 ARG ALA THR ALA ALA SER ILE MET ALA ILE TYR ALA SER SEQRES 6 A 483 MET VAL TYR LEU SER GLY THR ILE GLY GLY PHE VAL ALA SEQRES 7 A 483 ASP ARG ILE ILE GLY ALA ARG PRO ALA VAL PHE TRP GLY SEQRES 8 A 483 GLY VAL LEU ILE MET LEU GLY HIS ILE VAL LEU ALA LEU SEQRES 9 A 483 PRO PHE GLY ALA SER ALA LEU PHE GLY SER ILE ILE LEU SEQRES 10 A 483 ILE ILE ILE GLY THR GLY PHE LEU LYS PRO ASN VAL SER SEQRES 11 A 483 THR LEU VAL GLY THR LEU TYR ASP GLU HIS ASP ARG ARG SEQRES 12 A 483 ARG ASP ALA GLY PHE SER ILE PHE VAL PHE GLY ILE ASN SEQRES 13 A 483 LEU GLY ALA PHE ILE ALA PRO LEU ILE VAL GLY ALA ALA SEQRES 14 A 483 GLN GLU ALA ALA GLY TYR HIS VAL ALA PHE SER LEU ALA SEQRES 15 A 483 ALA ILE GLY MET PHE ILE GLY LEU LEU VAL TYR TYR PHE SEQRES 16 A 483 GLY GLY LYS LYS THR LEU ASP PRO HIS TYR LEU ARG PRO SEQRES 17 A 483 THR ASP PRO LEU ALA PRO GLU GLU VAL LYS PRO LEU LEU SEQRES 18 A 483 VAL LYS VAL SER LEU ALA VAL ALA GLY PHE ILE ALA ILE SEQRES 19 A 483 ILE VAL VAL MET ASN LEU VAL GLY TRP ASN SER LEU PRO SEQRES 20 A 483 ALA TYR ILE ASN LEU LEU THR ILE VAL ALA ILE ALA ILE SEQRES 21 A 483 PRO VAL PHE TYR PHE ALA TRP MET ILE SER SER VAL LYS SEQRES 22 A 483 VAL THR SER THR GLU HIS LEU ARG VAL VAL SER TYR ILE SEQRES 23 A 483 PRO LEU PHE ILE ALA ALA VAL LEU PHE TRP ALA ILE GLU SEQRES 24 A 483 GLU GLN GLY SER VAL VAL LEU ALA THR PHE ALA ALA GLU SEQRES 25 A 483 ARG VAL ASP SER SER TRP PHE PRO VAL SER TRP PHE GLN SEQRES 26 A 483 SER LEU ASN PRO LEU PHE ILE MET LEU TYR THR PRO PHE SEQRES 27 A 483 PHE ALA TRP LEU TRP THR ALA TRP LYS LYS ASN GLN PRO SEQRES 28 A 483 SER SER PRO THR LYS PHE ALA VAL GLY LEU MET PHE ALA SEQRES 29 A 483 GLY LEU SER PHE LEU LEU MET ALA ILE PRO GLY ALA LEU SEQRES 30 A 483 TYR GLY THR SER GLY LYS VAL SER PRO LEU TRP LEU VAL SEQRES 31 A 483 GLY SER TRP ALA LEU VAL ILE LEU GLY GLU MET LEU ILE SEQRES 32 A 483 SER PRO VAL GLY LEU SER VAL THR THR LYS LEU ALA PRO SEQRES 33 A 483 LYS ALA PHE ASN SER GLN MET MET SER MET TRP PHE LEU SEQRES 34 A 483 SER SER SER VAL GLY SER ALA LEU ASN ALA GLN LEU VAL SEQRES 35 A 483 THR LEU TYR ASN ALA LYS SER GLU VAL ALA TYR PHE SER SEQRES 36 A 483 TYR PHE GLY LEU GLY SER VAL VAL LEU GLY ILE VAL LEU SEQRES 37 A 483 VAL PHE LEU SER LYS ARG ILE GLN GLY LEU MET GLN GLY SEQRES 38 A 483 VAL GLU SEQRES 1 B 3 PHE ALA GLN HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 A 503 5 HET 1PE A 504 10 HET EPE A 505 15 HET NA A 506 1 HET 78N A 507 22 HET 78M A 508 22 HET 78N A 509 22 HET 78M A 510 22 HET 78N A 511 22 HET 78N A 512 22 HET 78N A 513 22 HET 78N A 514 22 HET 78N A 515 22 HET 78N A 516 22 HET 78N A 517 22 HET 78N A 518 22 HET 78N A 519 22 HET 78M A 520 22 HETNAM PO4 PHOSPHATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM NA SODIUM ION HETNAM 78N (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE HETNAM 78M (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE HETSYN 1PE PEG400 HETSYN EPE HEPES HETSYN 78N 7.8 MONOACYLGLYCEROL (2R) HETSYN 78M 7.8 MONOACYLGLYCEROL FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 1PE C10 H22 O6 FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 NA NA 1+ FORMUL 9 78N 11(C18 H34 O4) FORMUL 10 78M 3(C18 H34 O4) FORMUL 23 HOH *101(H2 O) HELIX 1 AA1 LEU A 13 THR A 46 1 34 HELIX 2 AA2 THR A 52 ILE A 81 1 30 HELIX 3 AA3 GLY A 83 LEU A 104 1 22 HELIX 4 AA4 GLY A 107 SER A 109 5 3 HELIX 5 AA5 ALA A 110 LEU A 136 1 27 HELIX 6 AA6 ARG A 143 GLY A 174 1 32 HELIX 7 AA7 GLY A 174 LEU A 201 1 28 HELIX 8 AA8 ASP A 202 ARG A 207 5 6 HELIX 9 AA9 ALA A 213 GLU A 215 5 3 HELIX 10 AB1 GLU A 216 VAL A 241 1 26 HELIX 11 AB2 SER A 245 SER A 271 1 27 HELIX 12 AB3 LEU A 280 GLN A 301 1 22 HELIX 13 AB4 VAL A 304 VAL A 314 1 11 HELIX 14 AB5 PRO A 320 GLN A 325 5 6 HELIX 15 AB6 SER A 326 TRP A 346 1 21 HELIX 16 AB7 SER A 352 GLY A 379 1 28 HELIX 17 AB8 PRO A 386 LEU A 414 1 29 HELIX 18 AB9 GLN A 422 VAL A 442 1 21 HELIX 19 AC1 THR A 443 TYR A 445 5 3 HELIX 20 AC2 SER A 449 LEU A 478 1 30 LINK O SER A 316 NA NA A 506 1555 1555 2.22 LINK OG SER A 316 NA NA A 506 1555 1555 2.85 LINK O PHE A 319 NA NA A 506 1555 1555 2.25 LINK NA NA A 506 O HOH A 605 1555 1555 2.55 LINK NA NA A 506 O HOH A 626 1555 4555 2.49 LINK NA NA A 506 O HOH A 696 1555 1555 2.41 SITE 1 AC1 5 ASP A 48 GLY A 107 ALA A 108 SER A 109 SITE 2 AC1 5 LYS A 473 SITE 1 AC2 4 GLY A 174 TYR A 175 HIS A 176 78N A 512 SITE 1 AC3 6 HIS A 50 ILE A 51 THR A 52 THR A 55 SITE 2 AC3 6 PRO A 247 HOH A 602 SITE 1 AC4 5 TYR A 38 GLN A 170 GLU A 171 HOH A 671 SITE 2 AC4 5 HOH A 675 SITE 1 AC5 5 TYR A 378 VAL A 384 SER A 385 TRP A 388 SITE 2 AC5 5 78M A 510 SITE 1 AC6 5 SER A 316 PHE A 319 HOH A 605 HOH A 626 SITE 2 AC6 5 HOH A 696 SITE 1 AC7 7 LEU A 369 ILE A 373 ALA A 376 SER A 455 SITE 2 AC7 7 78N A 509 78N A 518 HOH A 652 SITE 1 AC8 1 LEU A 459 SITE 1 AC9 9 LYS A 218 LEU A 221 SER A 225 ILE A 232 SITE 2 AC9 9 LEU A 370 TYR A 378 TRP A 388 78N A 507 SITE 3 AC9 9 78M A 510 SITE 1 AD1 8 TYR A 335 SER A 385 LEU A 387 TRP A 388 SITE 2 AD1 8 GLY A 391 LEU A 398 EPE A 505 78N A 509 SITE 1 AD2 3 PHE A 319 TRP A 323 VAL A 390 SITE 1 AD3 5 SER A 180 PHE A 195 PO4 A 502 HOH A 653 SITE 2 AD3 5 HOH A 655 SITE 1 AD4 6 ILE A 62 PHE A 112 ILE A 116 LEU A 246 SITE 2 AD4 6 LEU A 253 78N A 514 SITE 1 AD5 5 PHE A 112 PHE A 231 ASN A 244 TYR A 249 SITE 2 AD5 5 78N A 513 SITE 1 AD6 4 ALA A 248 ASN A 251 LEU A 252 ILE A 255 SITE 1 AD7 6 ARG A 85 PRO A 86 PHE A 89 TRP A 90 SITE 2 AD7 6 LEU A 206 HOH A 684 SITE 1 AD8 3 LEU A 212 78N A 518 HOH A 676 SITE 1 AD9 6 LEU A 212 PRO A 214 LEU A 221 ALA A 376 SITE 2 AD9 6 78N A 507 78N A 517 SITE 1 AE1 6 SER A 109 LEU A 117 VAL A 469 PHE A 470 SITE 2 AE1 6 SER A 472 LYS A 473 SITE 1 AE2 3 ALA A 452 TYR A 456 PHE A 457 CRYST1 101.550 108.220 111.610 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008960 0.00000