HEADER PROTEIN BINDING 08-MAY-18 6GHO TITLE CRYSTAL STRUCTURE OF SPX IN COMPLEX WITH YJBH COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN SPX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UPF0413 PROTEIN GK0824; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: SPXA, YJBD, BSU11500; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS HTA426; SOURCE 10 ORGANISM_TAXID: 235909; SOURCE 11 GENE: GK0824; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS REGULATORY PROTEIN SPX ADAPTOR PROTEIN YJBH, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.AWAD,D.T.LOGAN,C.VON WACHENFELDT REVDAT 2 19-JUN-19 6GHO 1 JRNL REVDAT 1 24-APR-19 6GHO 0 JRNL AUTH W.AWAD,Y.AL-ERYANI,S.EKSTROM,D.T.LOGAN,C.VON WACHENFELDT JRNL TITL STRUCTURAL BASIS FOR YJBH ADAPTOR-MEDIATED RECOGNITION OF JRNL TITL 2 TRANSCRIPTION FACTOR SPX. JRNL REF STRUCTURE V. 27 923 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 30982633 JRNL DOI 10.1016/J.STR.2019.03.009 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.280 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6821 - 4.3129 1.00 3409 153 0.1741 0.2067 REMARK 3 2 4.3129 - 3.4237 1.00 3257 145 0.1638 0.1803 REMARK 3 3 3.4237 - 2.9911 1.00 3235 145 0.1927 0.2273 REMARK 3 4 2.9911 - 2.7176 1.00 3206 143 0.1950 0.2679 REMARK 3 5 2.7176 - 2.5229 1.00 3189 143 0.1986 0.2276 REMARK 3 6 2.5229 - 2.3741 1.00 3165 141 0.1884 0.2377 REMARK 3 7 2.3741 - 2.2552 1.00 3193 143 0.1939 0.2254 REMARK 3 8 2.2552 - 2.1571 1.00 3181 142 0.1920 0.2524 REMARK 3 9 2.1571 - 2.0740 1.00 3142 140 0.1977 0.2197 REMARK 3 10 2.0740 - 2.0025 1.00 3167 142 0.2046 0.2712 REMARK 3 11 2.0025 - 1.9399 1.00 3165 142 0.2187 0.2495 REMARK 3 12 1.9399 - 1.8844 1.00 3158 140 0.2314 0.2878 REMARK 3 13 1.8844 - 1.8348 1.00 3157 142 0.2531 0.2558 REMARK 3 14 1.8348 - 1.7900 1.00 3123 139 0.2642 0.2635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3307 REMARK 3 ANGLE : 0.776 4490 REMARK 3 CHIRALITY : 0.047 499 REMARK 3 PLANARITY : 0.004 580 REMARK 3 DIHEDRAL : 19.800 2044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2409 44.7909 89.0182 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.3745 REMARK 3 T33: 0.2971 T12: 0.0101 REMARK 3 T13: -0.0135 T23: -0.1459 REMARK 3 L TENSOR REMARK 3 L11: 0.1263 L22: 3.1348 REMARK 3 L33: 4.7275 L12: 0.6050 REMARK 3 L13: -0.4780 L23: -3.8368 REMARK 3 S TENSOR REMARK 3 S11: -0.2112 S12: -0.5758 S13: 0.2839 REMARK 3 S21: 1.0733 S22: -0.0401 S23: -0.5942 REMARK 3 S31: -0.5269 S32: 0.2861 S33: 0.2178 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8630 43.6145 77.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.2358 T22: 0.2859 REMARK 3 T33: 0.2757 T12: 0.0218 REMARK 3 T13: 0.0311 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.8455 L22: 3.5096 REMARK 3 L33: 1.5244 L12: -0.7545 REMARK 3 L13: 0.1707 L23: -0.7902 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: -0.3448 S13: 0.3059 REMARK 3 S21: 0.0418 S22: 0.1620 S23: 0.4368 REMARK 3 S31: -0.3696 S32: -0.2039 S33: -0.0674 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8497 23.2192 79.4069 REMARK 3 T TENSOR REMARK 3 T11: 0.1783 T22: 0.2458 REMARK 3 T33: 0.2362 T12: 0.0245 REMARK 3 T13: 0.0354 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 1.8227 L22: 2.7767 REMARK 3 L33: 2.0643 L12: 0.3918 REMARK 3 L13: 0.4814 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.1586 S13: -0.0547 REMARK 3 S21: -0.0511 S22: 0.0221 S23: -0.3728 REMARK 3 S31: 0.0887 S32: 0.2482 S33: 0.0474 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1975 41.9326 56.7209 REMARK 3 T TENSOR REMARK 3 T11: 0.5067 T22: 0.3222 REMARK 3 T33: 0.3491 T12: -0.0494 REMARK 3 T13: -0.0139 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.7266 L22: 1.7072 REMARK 3 L33: 2.1698 L12: 0.9383 REMARK 3 L13: 1.5175 L23: 0.8071 REMARK 3 S TENSOR REMARK 3 S11: -0.1437 S12: -0.0414 S13: 0.4929 REMARK 3 S21: -0.4846 S22: -0.0387 S23: 0.2449 REMARK 3 S31: -0.6008 S32: 0.1187 S33: 0.0947 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3196 53.4406 57.8262 REMARK 3 T TENSOR REMARK 3 T11: 0.7668 T22: 0.8908 REMARK 3 T33: 1.0569 T12: -0.0401 REMARK 3 T13: 0.2332 T23: 0.1650 REMARK 3 L TENSOR REMARK 3 L11: 0.0409 L22: -0.0597 REMARK 3 L33: 2.7165 L12: -0.1023 REMARK 3 L13: -0.4914 L23: -0.0125 REMARK 3 S TENSOR REMARK 3 S11: 0.5660 S12: 0.4777 S13: 0.0940 REMARK 3 S21: -0.9528 S22: 0.3812 S23: -1.4242 REMARK 3 S31: -0.0813 S32: 0.5106 S33: -0.4082 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7697 47.5617 60.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.5097 T22: 0.2477 REMARK 3 T33: 0.3102 T12: -0.0503 REMARK 3 T13: -0.0358 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.0899 L22: 3.6034 REMARK 3 L33: 1.5117 L12: 0.6619 REMARK 3 L13: 0.6289 L23: 0.4069 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: 0.1216 S13: 0.2600 REMARK 3 S21: -0.1854 S22: -0.0721 S23: -0.2178 REMARK 3 S31: -0.3466 S32: -0.1052 S33: -0.0661 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7275 22.8582 62.6369 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.2392 REMARK 3 T33: 0.3469 T12: -0.0633 REMARK 3 T13: -0.0719 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.9496 L22: 1.6881 REMARK 3 L33: 2.3449 L12: -0.4576 REMARK 3 L13: 0.3107 L23: -0.3848 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: -0.0544 S13: -0.5049 REMARK 3 S21: -0.2032 S22: -0.0315 S23: -0.3423 REMARK 3 S31: 0.2559 S32: -0.1525 S33: 0.1317 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4008 25.5745 74.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1934 REMARK 3 T33: 0.2129 T12: -0.0136 REMARK 3 T13: 0.0424 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.6697 L22: 3.2962 REMARK 3 L33: 1.3389 L12: -0.8027 REMARK 3 L13: -0.2179 L23: 0.5602 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.1658 S13: 0.1742 REMARK 3 S21: -0.2354 S22: 0.0482 S23: -0.1493 REMARK 3 S31: -0.0358 S32: 0.0155 S33: -0.0928 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0531 32.6143 94.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.8752 T22: 1.1127 REMARK 3 T33: 0.9069 T12: 0.2183 REMARK 3 T13: 0.2342 T23: -0.1926 REMARK 3 L TENSOR REMARK 3 L11: -0.1383 L22: -0.0856 REMARK 3 L33: -0.0058 L12: -0.0440 REMARK 3 L13: -0.0276 L23: 0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.2454 S12: -1.1157 S13: 0.0879 REMARK 3 S21: 0.5364 S22: 0.1025 S23: 0.5958 REMARK 3 S31: -0.2052 S32: -0.8862 S33: -0.0735 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4074 34.5252 89.4228 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.3462 REMARK 3 T33: 0.2178 T12: 0.0030 REMARK 3 T13: 0.0434 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 1.6265 L22: 3.6577 REMARK 3 L33: 2.7811 L12: -0.3728 REMARK 3 L13: 1.2040 L23: -0.8372 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: -0.4665 S13: 0.0532 REMARK 3 S21: 0.5069 S22: 0.0468 S23: 0.1386 REMARK 3 S31: -0.2500 S32: -0.2542 S33: 0.0504 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 42.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MGCL2 AND BIS-TRIS PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 126 REMARK 465 GLN A 127 REMARK 465 ARG A 128 REMARK 465 LEU A 129 REMARK 465 ALA A 130 REMARK 465 ASN A 131 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 5 REMARK 465 ALA B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 THR B 9 REMARK 465 THR B 10 REMARK 465 SER B 11 REMARK 465 THR B 12 REMARK 465 CYS B 13 REMARK 465 TYR B 14 REMARK 465 PRO B 15 REMARK 465 SER B 16 REMARK 465 GLN B 17 REMARK 465 PRO B 18 REMARK 465 LEU B 19 REMARK 465 GLY B 20 REMARK 465 SER B 295 REMARK 465 ARG B 296 REMARK 465 PRO B 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LEU A 67 CG CD1 CD2 REMARK 470 ASN A 68 CG OD1 ND2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 TRP B 67 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 67 CZ3 CH2 REMARK 470 TRP B 70 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 70 CZ3 CH2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 428 O HOH B 543 2.00 REMARK 500 O HOH B 407 O HOH B 524 2.02 REMARK 500 O HOH B 524 O HOH B 529 2.05 REMARK 500 NH1 ARG A 30 O GLU A 35 2.08 REMARK 500 O HOH A 228 O HOH A 242 2.11 REMARK 500 O HOH A 223 O HOH B 543 2.13 REMARK 500 O HOH A 258 O HOH A 269 2.14 REMARK 500 O HOH A 222 O HOH A 275 2.18 REMARK 500 OE2 GLU B 240 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 53 18.95 -145.37 REMARK 500 ASP A 54 -70.65 -34.40 REMARK 500 ASN B 104 69.92 -158.44 REMARK 500 LYS B 247 -22.22 71.07 REMARK 500 PHE B 248 109.17 -161.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 53 ASP A 54 -141.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GHB RELATED DB: PDB REMARK 900 OTHER CRYSTAL FORM CONTAINED TWO SPX-YJBH COMPLEXES IN THE REMARK 900 ASYMMETRIC UNIT DBREF 6GHO A 1 131 UNP O31602 SPX_BACSU 1 131 DBREF 6GHO B 1 297 UNP Q5L1S1 Y824_GEOKA 1 297 SEQADV 6GHO SER A 0 UNP O31602 EXPRESSION TAG SEQADV 6GHO SER B 0 UNP Q5L1S1 EXPRESSION TAG SEQRES 1 A 132 SER MET VAL THR LEU TYR THR SER PRO SER CYS THR SER SEQRES 2 A 132 CYS ARG LYS ALA ARG ALA TRP LEU GLU GLU HIS GLU ILE SEQRES 3 A 132 PRO PHE VAL GLU ARG ASN ILE PHE SER GLU PRO LEU SER SEQRES 4 A 132 ILE ASP GLU ILE LYS GLN ILE LEU ARG MET THR GLU ASP SEQRES 5 A 132 GLY THR ASP GLU ILE ILE SER THR ARG SER LYS VAL PHE SEQRES 6 A 132 GLN LYS LEU ASN VAL ASN VAL GLU SER MET PRO LEU GLN SEQRES 7 A 132 ASP LEU TYR ARG LEU ILE ASN GLU HIS PRO GLY LEU LEU SEQRES 8 A 132 ARG ARG PRO ILE ILE ILE ASP GLU LYS ARG LEU GLN VAL SEQRES 9 A 132 GLY TYR ASN GLU ASP GLU ILE ARG ARG PHE LEU PRO ARG SEQRES 10 A 132 LYS VAL ARG SER PHE GLN LEU ARG GLU ALA GLN ARG LEU SEQRES 11 A 132 ALA ASN SEQRES 1 B 298 SER MET SER GLU LYS PHE ALA GLY LYS THR THR SER THR SEQRES 2 B 298 CYS TYR PRO SER GLN PRO LEU GLY ASN THR ASN LYS PRO SEQRES 3 B 298 LEU GLU LEU TYR LEU PHE ILE ASP PRO LEU CYS PRO GLU SEQRES 4 B 298 CYS TRP GLY LEU GLU PRO VAL ILE LYS LYS LEU THR ILE SEQRES 5 B 298 GLU TYR GLY ARG PHE PHE THR LEU ARG HIS ILE LEU SER SEQRES 6 B 298 GLY THR TRP ALA THR TRP SER ALA ARG LYS GLY THR LYS SEQRES 7 B 298 PRO GLU ALA MET ALA LYS ALA TRP GLU TRP ALA ALA ASN SEQRES 8 B 298 ARG THR GLY MET SER CYS ASP GLY SER VAL TRP LEU GLU SEQRES 9 B 298 ASN PRO ILE SER SER PRO PHE ALA PRO SER LEU ALA ILE SEQRES 10 B 298 LYS ALA ALA GLU MET GLN GLY LYS ARG ALA GLY LEU ARG SEQRES 11 B 298 PHE LEU ARG LYS LEU GLN GLU GLN LEU PHE LEU GLU LYS SEQRES 12 B 298 GLN ASN VAL ALA ASP LEU SER VAL LEU ALA GLU CYS ALA SEQRES 13 B 298 VAL LYS ALA GLY LEU ASP VAL ASP GLU PHE LEU ARG ASP SEQRES 14 B 298 MET HIS SER PRO GLY ALA ALA LYS ALA PHE GLN CYS ASP SEQRES 15 B 298 LEU LYS ILE THR SER GLU MET ASP VAL ASP GLU ILE PRO SEQRES 16 B 298 THR LEU VAL LEU PHE ASN GLU ASN ILE GLU ASP GLU GLY SEQRES 17 B 298 ILE LYS ILE SER GLY CYS TYR PRO TYR ASP ILE TYR VAL SEQRES 18 B 298 GLU LEU ILE ALA GLU MET LEU GLY PHE HIS PRO GLU PRO SEQRES 19 B 298 SER SER PRO PRO PRO LEU GLU SER PHE LEU SER HIS PHE SEQRES 20 B 298 LYS PHE VAL ALA THR LYS GLU VAL ALA VAL VAL TYR ASN SEQRES 21 B 298 TRP THR ILE GLN GLU ALA GLU THR GLU MET LYS LYS LEU SEQRES 22 B 298 GLN LEU LYS GLN LYS VAL GLU ARG VAL PRO VAL LYS HIS SEQRES 23 B 298 GLY THR PHE TRP ARG TYR ILE ASP ASP SER ARG PRO HET CL B 301 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *248(H2 O) HELIX 1 AA1 CYS A 10 HIS A 23 1 14 HELIX 2 AA2 SER A 38 ARG A 47 1 10 HELIX 3 AA3 SER A 61 ASN A 68 1 8 HELIX 4 AA4 PRO A 75 HIS A 86 1 12 HELIX 5 AA5 PRO A 87 LEU A 90 5 4 HELIX 6 AA6 ASP A 108 LEU A 114 5 7 HELIX 7 AA7 CYS B 36 LEU B 42 1 7 HELIX 8 AA8 LEU B 42 GLY B 54 1 13 HELIX 9 AA9 THR B 66 THR B 76 1 11 HELIX 10 AB1 LYS B 77 GLY B 93 1 17 HELIX 11 AB2 SER B 99 ASN B 104 1 6 HELIX 12 AB3 PHE B 110 MET B 121 1 12 HELIX 13 AB4 GLY B 123 LYS B 142 1 20 HELIX 14 AB5 ASP B 147 ALA B 158 1 12 HELIX 15 AB6 ASP B 161 HIS B 170 1 10 HELIX 16 AB7 SER B 171 MET B 188 1 18 HELIX 17 AB8 PRO B 215 GLY B 228 1 14 HELIX 18 AB9 PRO B 238 LYS B 247 1 10 HELIX 19 AC1 THR B 251 ASN B 259 1 9 HELIX 20 AC2 THR B 261 LYS B 275 1 15 SHEET 1 AA1 4 PHE A 27 ASN A 31 0 SHEET 2 AA1 4 VAL A 2 THR A 6 1 N LEU A 4 O ARG A 30 SHEET 3 AA1 4 ILE A 94 ILE A 96 -1 O ILE A 94 N TYR A 5 SHEET 4 AA1 4 LEU A 101 VAL A 103 -1 O GLN A 102 N ILE A 95 SHEET 1 AA2 5 VAL A 118 SER A 120 0 SHEET 2 AA2 5 GLY B 207 SER B 211 1 O GLY B 207 N ARG A 119 SHEET 3 AA2 5 THR B 195 PHE B 199 -1 N LEU B 198 O ILE B 208 SHEET 4 AA2 5 LEU B 26 ILE B 32 -1 N PHE B 31 O THR B 195 SHEET 5 AA2 5 PHE B 57 LEU B 63 1 O ARG B 60 N LEU B 30 SHEET 1 AA3 3 PHE B 248 ALA B 250 0 SHEET 2 AA3 3 THR B 287 TYR B 291 -1 O TRP B 289 N VAL B 249 SHEET 3 AA3 3 VAL B 278 PRO B 282 -1 N VAL B 281 O PHE B 288 SSBOND 1 CYS A 10 CYS A 13 1555 1555 2.05 CISPEP 1 ARG A 92 PRO A 93 0 -0.95 CISPEP 2 ILE B 193 PRO B 194 0 -4.25 SITE 1 AC1 2 LYS B 247 ARG B 290 CRYST1 52.100 85.340 109.530 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009130 0.00000