HEADER HYDROLASE 09-MAY-18 6GHX TITLE ALZHEIMER'S AMYLOID-BETA PEPTIDE FRAGMENT 31-35 IN COMPLEX WITH CD- TITLE 2 SUBSTITUTED THERMOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEUTRAL PROTEASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422 KEYWDS PEPTIDASE, PROTEIN-PEPTIDE COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.LEITE,L.GALES REVDAT 2 17-JAN-24 6GHX 1 REMARK LINK REVDAT 1 06-FEB-19 6GHX 0 JRNL AUTH J.P.LEITE,L.GALES JRNL TITL ALZHEIMER'S A BETA1-40PEPTIDE DEGRADATION BY THERMOLYSIN: JRNL TITL 2 EVIDENCE OF INHIBITION BY A C-TERMINAL A BETA PRODUCT. JRNL REF FEBS LETT. V. 593 128 2019 JRNL REFN ISSN 1873-3468 JRNL PMID 30403288 JRNL DOI 10.1002/1873-3468.13285 REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 115073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5677 - 3.5911 1.00 4021 233 0.1673 0.2022 REMARK 3 2 3.5911 - 2.8505 1.00 3809 213 0.1704 0.1882 REMARK 3 3 2.8505 - 2.4902 1.00 3772 196 0.1718 0.2019 REMARK 3 4 2.4902 - 2.2625 1.00 3743 187 0.1757 0.1921 REMARK 3 5 2.2625 - 2.1004 1.00 3690 232 0.1603 0.1788 REMARK 3 6 2.1004 - 1.9765 1.00 3686 180 0.1624 0.1731 REMARK 3 7 1.9765 - 1.8775 1.00 3712 192 0.1657 0.1764 REMARK 3 8 1.8775 - 1.7958 1.00 3708 177 0.1649 0.1824 REMARK 3 9 1.7958 - 1.7267 1.00 3659 196 0.1789 0.1888 REMARK 3 10 1.7267 - 1.6671 1.00 3663 190 0.1877 0.1874 REMARK 3 11 1.6671 - 1.6150 1.00 3649 210 0.2057 0.2204 REMARK 3 12 1.6150 - 1.5688 1.00 3684 173 0.2249 0.2876 REMARK 3 13 1.5688 - 1.5275 1.00 3636 209 0.2438 0.2546 REMARK 3 14 1.5275 - 1.4902 1.00 3673 178 0.2775 0.2712 REMARK 3 15 1.4902 - 1.4563 1.00 3608 197 0.3274 0.2882 REMARK 3 16 1.4563 - 1.4253 1.00 3671 184 0.5897 0.5821 REMARK 3 17 1.4253 - 1.3968 1.00 3633 210 0.5111 0.4606 REMARK 3 18 1.3968 - 1.3705 1.00 3611 174 0.4050 0.4368 REMARK 3 19 1.3705 - 1.3460 0.99 3596 193 0.3720 0.4121 REMARK 3 20 1.3460 - 1.3232 0.99 3625 187 0.3531 0.3798 REMARK 3 21 1.3232 - 1.3018 1.00 3645 171 0.3308 0.3824 REMARK 3 22 1.3018 - 1.2818 1.00 3607 196 0.3329 0.3294 REMARK 3 23 1.2818 - 1.2629 1.00 3609 203 0.3368 0.3489 REMARK 3 24 1.2629 - 1.2452 1.00 3625 200 0.3416 0.3248 REMARK 3 25 1.2452 - 1.2283 1.00 3605 183 0.3160 0.3365 REMARK 3 26 1.2283 - 1.2124 1.00 3624 182 0.3279 0.3420 REMARK 3 27 1.2124 - 1.1972 1.00 3659 172 0.3383 0.3450 REMARK 3 28 1.1972 - 1.1828 1.00 3608 193 0.3325 0.3494 REMARK 3 29 1.1828 - 1.1690 1.00 3622 180 0.3479 0.3317 REMARK 3 30 1.1690 - 1.1559 0.80 2876 153 0.3798 0.4347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2541 REMARK 3 ANGLE : 0.824 3469 REMARK 3 CHIRALITY : 0.081 373 REMARK 3 PLANARITY : 0.005 456 REMARK 3 DIHEDRAL : 2.780 1381 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.4159 30.4364 -2.5505 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1309 REMARK 3 T33: 0.1264 T12: 0.0098 REMARK 3 T13: 0.0182 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.2017 L22: 0.3002 REMARK 3 L33: 0.5776 L12: 0.2400 REMARK 3 L13: 0.5800 L23: 0.0985 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.0519 S13: -0.0385 REMARK 3 S21: 0.0016 S22: -0.0125 S23: 0.0429 REMARK 3 S31: 0.0238 S32: -0.0194 S33: -0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07227 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BE CRL LENSES FOR VERTICAL REMARK 200 FOCUSING AND RH/PT/SI COATED REMARK 200 ELLIPITCAL MIRROR FOR HORIZONTAL REMARK 200 FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 46.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.40 REMARK 200 R MERGE FOR SHELL (I) : 2.78500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID 1KEI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES: 45% DMSO: 0.7-0.9 M NACL: 0 REMARK 280 -0.4 M CDCL2: RESERVOIR SOLUTION CONTAINING 30-40% AMMONIUM REMARK 280 SULPHATE, PH 6.0, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.43000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.86000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.14500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.57500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.71500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.43000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.86000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.57500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.14500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 738 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 779 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 829 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 128 CG CD OE1 NE2 REMARK 480 LYS A 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ILE A 407 N ILE A 408 1.16 REMARK 500 O ILE A 407 N ILE A 408 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 201 C LEU A 202 N -0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -58.39 68.82 REMARK 500 SER A 92 -172.43 59.18 REMARK 500 SER A 107 -163.67 60.07 REMARK 500 ASN A 111 54.41 -92.22 REMARK 500 THR A 152 -98.05 -124.61 REMARK 500 ASN A 159 -140.95 57.45 REMARK 500 THR A 194 77.81 40.72 REMARK 500 TYR A 274 -40.82 -130.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 860 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 861 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 863 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 11.51 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ILE A 407 REMARK 610 ILE A 408 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 51.3 REMARK 620 3 ASP A 59 OD1 118.5 67.5 REMARK 620 4 GLN A 61 O 92.6 88.0 91.6 REMARK 620 5 HOH A 511 O 165.6 142.3 74.8 92.5 REMARK 620 6 HOH A 647 O 85.5 135.2 155.6 82.1 82.0 REMARK 620 7 HOH A 733 O 86.7 88.6 85.4 176.1 89.1 101.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 80.4 REMARK 620 3 GLU A 177 OE2 129.2 48.9 REMARK 620 4 ASP A 185 OD1 161.3 118.0 69.1 REMARK 620 5 GLU A 187 O 86.4 148.5 138.0 79.0 REMARK 620 6 GLU A 190 OE1 85.9 128.6 120.1 79.8 78.3 REMARK 620 7 GLU A 190 OE2 97.8 80.9 73.8 83.0 129.5 52.1 REMARK 620 8 HOH A 562 O 100.9 80.1 76.9 86.4 74.4 151.3 150.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 405 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 96.1 REMARK 620 3 GLU A 166 OE2 117.1 90.9 REMARK 620 4 HOH A 502 O 112.8 92.8 129.2 REMARK 620 5 HOH A 509 O 102.7 158.5 89.7 70.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 93.0 REMARK 620 3 ASP A 185 OD2 89.4 86.9 REMARK 620 4 GLU A 190 OE2 86.5 172.2 85.4 REMARK 620 5 HOH A 560 O 88.0 93.8 177.4 94.0 REMARK 620 6 HOH A 685 O 171.2 79.4 94.5 101.6 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 76.0 REMARK 620 3 THR A 194 OG1 78.1 69.4 REMARK 620 4 ILE A 197 O 153.0 79.3 103.4 REMARK 620 5 ASP A 200 OD1 123.6 133.4 74.4 81.8 REMARK 620 6 HOH A 582 O 83.5 151.7 125.3 115.1 74.4 REMARK 620 7 HOH A 725 O 86.7 84.1 151.8 79.9 133.3 75.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ILE A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ILE A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ONQ RELATED DB: PDB REMARK 900 RELATED ID: 5ONP RELATED DB: PDB REMARK 900 RELATED ID: 5ONR RELATED DB: PDB DBREF 6GHX A 1 316 UNP P43133 THER_GEOSE 236 551 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CD A 405 1 HET DMS A 406 4 HET ILE A 407 8 HET ILE A 408 8 HETNAM CA CALCIUM ION HETNAM CD CADMIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM ILE ISOLEUCINE FORMUL 2 CA 4(CA 2+) FORMUL 6 CD CD 2+ FORMUL 7 DMS C2 H6 O S FORMUL 8 ILE 2(C6 H13 N O2) FORMUL 10 HOH *367(H2 O) HELIX 1 AA1 ALA A 64 TYR A 66 5 3 HELIX 2 AA2 ASP A 67 ASN A 89 1 23 HELIX 3 AA3 PRO A 132 GLY A 135 5 4 HELIX 4 AA4 GLY A 136 THR A 152 1 17 HELIX 5 AA5 GLN A 158 ASN A 181 1 24 HELIX 6 AA6 ASP A 207 GLY A 212 5 6 HELIX 7 AA7 HIS A 216 ARG A 220 5 5 HELIX 8 AA8 THR A 224 VAL A 230 1 7 HELIX 9 AA9 ASN A 233 GLY A 247 1 15 HELIX 10 AB1 GLY A 259 TYR A 274 1 16 HELIX 11 AB2 ASN A 280 GLY A 297 1 18 HELIX 12 AB3 SER A 300 VAL A 313 1 14 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N THR A 4 O TYR A 24 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 TYR A 106 1 O SER A 102 N TYR A 42 SHEET 4 AA3 5 MET A 120 GLY A 123 1 O MET A 120 N ARG A 101 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AA5 2 GLY A 248 HIS A 250 0 SHEET 2 AA5 2 VAL A 253 VAL A 255 -1 O VAL A 255 N GLY A 248 LINK OD1 ASP A 57 CA CA A 401 1555 1555 2.35 LINK OD2 ASP A 57 CA CA A 401 1555 1555 2.63 LINK OD1 ASP A 59 CA CA A 401 1555 1555 2.35 LINK O GLN A 61 CA CA A 401 1555 1555 2.21 LINK OD2 ASP A 138 CA CA A 402 1555 1555 2.35 LINK NE2 HIS A 142 CD CD A 405 1555 1555 2.32 LINK NE2 HIS A 146 CD CD A 405 1555 1555 2.34 LINK OE2 GLU A 166 CD CD A 405 1555 1555 2.35 LINK OE1 GLU A 177 CA CA A 402 1555 1555 2.37 LINK OE2 GLU A 177 CA CA A 402 1555 1555 2.78 LINK OE2 GLU A 177 CA CA A 403 1555 1555 2.41 LINK O ASN A 183 CA CA A 403 1555 1555 2.36 LINK OD1 ASP A 185 CA CA A 402 1555 1555 2.48 LINK OD2 ASP A 185 CA CA A 403 1555 1555 2.31 LINK O GLU A 187 CA CA A 402 1555 1555 2.29 LINK OE1 GLU A 190 CA CA A 402 1555 1555 2.48 LINK OE2 GLU A 190 CA CA A 402 1555 1555 2.54 LINK OE2 GLU A 190 CA CA A 403 1555 1555 2.26 LINK O TYR A 193 CA CA A 404 1555 1555 2.35 LINK O THR A 194 CA CA A 404 1555 1555 2.41 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.40 LINK O ILE A 197 CA CA A 404 1555 1555 2.29 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.36 LINK CA CA A 401 O HOH A 511 1555 1555 2.40 LINK CA CA A 401 O HOH A 647 1555 1555 2.28 LINK CA CA A 401 O HOH A 733 1555 1555 2.21 LINK CA CA A 402 O HOH A 562 1555 1555 2.47 LINK CA CA A 403 O HOH A 560 1555 1555 2.31 LINK CA CA A 403 O HOH A 685 1555 1555 2.47 LINK CA CA A 404 O HOH A 582 1555 1555 2.37 LINK CA CA A 404 O HOH A 725 1555 1555 2.47 LINK CD CD A 405 O HOH A 502 1555 1555 2.50 LINK CD CD A 405 O HOH A 509 1555 1555 2.42 CISPEP 1 LEU A 50 PRO A 51 0 3.74 SITE 1 AC1 6 ASP A 57 ASP A 59 GLN A 61 HOH A 511 SITE 2 AC1 6 HOH A 647 HOH A 733 SITE 1 AC2 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC2 6 GLU A 190 HOH A 562 SITE 1 AC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC3 6 HOH A 560 HOH A 685 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A 582 HOH A 725 SITE 1 AC5 5 HIS A 142 HIS A 146 GLU A 166 HOH A 502 SITE 2 AC5 5 HOH A 509 SITE 1 AC6 2 HIS A 216 SER A 218 SITE 1 AC7 11 ASN A 112 ALA A 113 LEU A 133 HIS A 142 SITE 2 AC7 11 GLU A 143 LEU A 202 ARG A 203 HIS A 231 SITE 3 AC7 11 ILE A 408 HOH A 502 HOH A 509 SITE 1 AC8 5 ASN A 111 ASN A 112 LEU A 202 HIS A 231 SITE 2 AC8 5 ILE A 407 CRYST1 93.060 93.060 130.290 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010746 0.006204 0.000000 0.00000 SCALE2 0.000000 0.012408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007675 0.00000