HEADER LYASE 09-MAY-18 6GHY TITLE STRUCTURE OF LYTIC TRANSGLYCOSYLASE MLTE INACTIVE MUTANT E64Q FROM TITLE 2 E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-TYPE MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE A; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: PEPTIDOGLYCAN LYTIC ENDOTRANSGLYCOSYLASE; COMPND 5 EC: 4.2.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: EMTA, MLTE, SLTZ, YCGP, B1193, JW5821; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYTIC TRANSGLYCOSYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.BATUECAS,J.A.HERMOSO REVDAT 2 17-JAN-24 6GHY 1 REMARK REVDAT 1 31-OCT-18 6GHY 0 JRNL AUTH D.A.DIK,M.T.BATUECAS,M.LEE,K.V.MAHASENAN,D.R.MAROUS, JRNL AUTH 2 E.LASTOCHKIN,J.F.FISHER,J.A.HERMOSO,S.MOBASHERY JRNL TITL A STRUCTURAL DISSECTION OF THE ACTIVE SITE OF THE LYTIC JRNL TITL 2 TRANSGLYCOSYLASE MLTE FROM ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 57 6090 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30256085 JRNL DOI 10.1021/ACS.BIOCHEM.8B00800 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972420 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22063 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 39.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Y8P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% POLYETHYLENE GLYCOL 4000, 0.2 M REMARK 280 MAGNESIUM CHLORIDE AND 0.1 M TRIS HCL (PH 8.4), BATCH MODE, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.41450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 17.41450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.74400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.56900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.74400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.56900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.41450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.74400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.56900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 17.41450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.74400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.56900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 499 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 18 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 MET A 18 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 514 1.20 REMARK 500 NH2 ARG A 90 O HOH A 401 1.32 REMARK 500 O HOH A 497 O HOH A 526 1.33 REMARK 500 O HOH A 420 O HOH A 428 1.59 REMARK 500 O HOH B 488 O HOH B 511 1.67 REMARK 500 O HOH A 512 O HOH A 522 1.67 REMARK 500 O HOH B 503 O HOH B 519 1.70 REMARK 500 O HOH A 407 O HOH A 524 1.76 REMARK 500 O HOH B 517 O HOH B 519 1.78 REMARK 500 O HOH B 524 O HOH B 535 1.81 REMARK 500 O HOH A 536 O HOH A 547 1.88 REMARK 500 O HOH B 413 O HOH B 519 1.90 REMARK 500 O HOH A 486 O HOH A 532 1.91 REMARK 500 O HOH A 470 O HOH A 539 1.96 REMARK 500 O HOH A 510 O HOH A 552 1.98 REMARK 500 O HOH B 519 O HOH B 532 2.00 REMARK 500 O HIS A 207 O HOH A 402 2.00 REMARK 500 O HOH A 535 O HOH A 545 2.04 REMARK 500 O HOH B 443 O HOH B 503 2.06 REMARK 500 O HOH B 408 O HOH B 411 2.08 REMARK 500 O HOH B 443 O HOH B 517 2.13 REMARK 500 O HOH A 499 O HOH A 511 2.15 REMARK 500 O HOH B 495 O HOH B 526 2.16 REMARK 500 O HOH B 465 O HOH B 478 2.18 REMARK 500 O LYS B 162 O HOH B 401 2.18 REMARK 500 O HOH A 454 O HOH A 544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 522 O HOH A 522 3555 1.62 REMARK 500 O HOH A 406 O HOH A 438 1556 1.78 REMARK 500 O HOH B 449 O HOH B 491 4555 1.83 REMARK 500 O HOH A 434 O HOH A 499 1556 1.91 REMARK 500 O HOH A 533 O HOH A 552 3555 1.98 REMARK 500 O HOH B 449 O HOH B 465 4555 2.04 REMARK 500 O HOH A 409 O HOH A 511 1556 2.04 REMARK 500 O HOH B 491 O HOH B 491 4555 2.17 REMARK 500 O HOH A 528 O HOH A 549 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 161 CG - CD - NE ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 94 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 87 -82.64 -126.53 REMARK 500 ASN A 76 36.82 70.92 REMARK 500 THR A 87 -86.28 -116.91 REMARK 500 HIS A 207 -69.68 -105.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 94 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 301 DBREF 6GHY B 19 203 UNP P0C960 EMTA_ECOLI 19 203 DBREF 6GHY A 19 203 UNP P0C960 EMTA_ECOLI 19 203 SEQADV 6GHY MET B 18 UNP P0C960 INITIATING METHIONINE SEQADV 6GHY GLN B 64 UNP P0C960 GLU 64 ENGINEERED MUTATION SEQADV 6GHY LEU B 204 UNP P0C960 EXPRESSION TAG SEQADV 6GHY GLU B 205 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS B 206 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS B 207 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS B 208 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS B 209 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS B 210 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS B 211 UNP P0C960 EXPRESSION TAG SEQADV 6GHY MET A 18 UNP P0C960 INITIATING METHIONINE SEQADV 6GHY GLN A 64 UNP P0C960 GLU 64 ENGINEERED MUTATION SEQADV 6GHY LEU A 204 UNP P0C960 EXPRESSION TAG SEQADV 6GHY GLU A 205 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS A 206 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS A 207 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS A 208 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS A 209 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS A 210 UNP P0C960 EXPRESSION TAG SEQADV 6GHY HIS A 211 UNP P0C960 EXPRESSION TAG SEQRES 1 B 194 MET LYS HIS ASP TYR THR ASN PRO PRO TRP ASN ALA LYS SEQRES 2 B 194 VAL PRO VAL GLN ARG ALA MET GLN TRP MET PRO ILE SER SEQRES 3 B 194 GLN LYS ALA GLY ALA ALA TRP GLY VAL ASP PRO GLN LEU SEQRES 4 B 194 ILE THR ALA ILE ILE ALA ILE GLN SER GLY GLY ASN PRO SEQRES 5 B 194 ASN ALA VAL SER LYS SER ASN ALA ILE GLY LEU MET GLN SEQRES 6 B 194 LEU LYS ALA SER THR SER GLY ARG ASP VAL TYR ARG ARG SEQRES 7 B 194 MET GLY TRP SER GLY GLU PRO THR THR SER GLU LEU LYS SEQRES 8 B 194 ASN PRO GLU ARG ASN ILE SER MET GLY ALA ALA TYR LEU SEQRES 9 B 194 ASN ILE LEU GLU THR GLY PRO LEU ALA GLY ILE GLU ASP SEQRES 10 B 194 PRO LYS VAL LEU GLN TYR ALA LEU VAL VAL SER TYR ALA SEQRES 11 B 194 ASN GLY ALA GLY ALA LEU LEU ARG THR PHE SER SER ASP SEQRES 12 B 194 ARG LYS LYS ALA ILE SER LYS ILE ASN ASP LEU ASP ALA SEQRES 13 B 194 ASP GLU PHE LEU GLU HIS VAL ALA ARG ASN HIS PRO ALA SEQRES 14 B 194 PRO GLN ALA PRO ARG TYR ILE TYR LYS LEU GLU GLN ALA SEQRES 15 B 194 LEU ASP ALA MET LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 194 MET LYS HIS ASP TYR THR ASN PRO PRO TRP ASN ALA LYS SEQRES 2 A 194 VAL PRO VAL GLN ARG ALA MET GLN TRP MET PRO ILE SER SEQRES 3 A 194 GLN LYS ALA GLY ALA ALA TRP GLY VAL ASP PRO GLN LEU SEQRES 4 A 194 ILE THR ALA ILE ILE ALA ILE GLN SER GLY GLY ASN PRO SEQRES 5 A 194 ASN ALA VAL SER LYS SER ASN ALA ILE GLY LEU MET GLN SEQRES 6 A 194 LEU LYS ALA SER THR SER GLY ARG ASP VAL TYR ARG ARG SEQRES 7 A 194 MET GLY TRP SER GLY GLU PRO THR THR SER GLU LEU LYS SEQRES 8 A 194 ASN PRO GLU ARG ASN ILE SER MET GLY ALA ALA TYR LEU SEQRES 9 A 194 ASN ILE LEU GLU THR GLY PRO LEU ALA GLY ILE GLU ASP SEQRES 10 A 194 PRO LYS VAL LEU GLN TYR ALA LEU VAL VAL SER TYR ALA SEQRES 11 A 194 ASN GLY ALA GLY ALA LEU LEU ARG THR PHE SER SER ASP SEQRES 12 A 194 ARG LYS LYS ALA ILE SER LYS ILE ASN ASP LEU ASP ALA SEQRES 13 A 194 ASP GLU PHE LEU GLU HIS VAL ALA ARG ASN HIS PRO ALA SEQRES 14 A 194 PRO GLN ALA PRO ARG TYR ILE TYR LYS LEU GLU GLN ALA SEQRES 15 A 194 LEU ASP ALA MET LEU GLU HIS HIS HIS HIS HIS HIS HET PEG B 301 7 HET PEG B 302 7 HET PEG A 301 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG 3(C4 H10 O3) FORMUL 6 HOH *295(H2 O) HELIX 1 AA1 ALA B 29 GLN B 38 1 10 HELIX 2 AA2 TRP B 39 GLY B 51 1 13 HELIX 3 AA3 ASP B 53 GLY B 66 1 14 HELIX 4 AA4 THR B 87 MET B 96 1 10 HELIX 5 AA5 THR B 103 ASN B 109 1 7 HELIX 6 AA6 ASN B 109 GLY B 127 1 19 HELIX 7 AA7 ASP B 134 GLY B 149 1 16 HELIX 8 AA8 GLY B 149 SER B 158 1 10 HELIX 9 AA9 ASP B 160 ASN B 169 1 10 HELIX 10 AB1 ASP B 172 HIS B 184 1 13 HELIX 11 AB2 PRO B 187 LEU B 204 1 18 HELIX 12 AB3 ALA A 29 GLN A 38 1 10 HELIX 13 AB4 TRP A 39 GLY A 51 1 13 HELIX 14 AB5 ASP A 53 GLY A 66 1 14 HELIX 15 AB6 THR A 87 MET A 96 1 10 HELIX 16 AB7 THR A 103 ASN A 109 1 7 HELIX 17 AB8 ASN A 109 GLY A 127 1 19 HELIX 18 AB9 ASP A 134 GLY A 149 1 16 HELIX 19 AC1 GLY A 149 SER A 158 1 10 HELIX 20 AC2 ASP A 160 ASN A 169 1 10 HELIX 21 AC3 ASP A 172 HIS A 184 1 13 HELIX 22 AC4 PRO A 187 LEU A 204 1 18 CISPEP 1 ASN B 24 PRO B 25 0 -3.87 CISPEP 2 ASN A 24 PRO A 25 0 -2.65 SITE 1 AC1 4 ALA A 49 TRP A 50 ARG B 95 PEG B 302 SITE 1 AC2 4 ARG A 95 ALA B 49 TRP B 50 PEG B 301 SITE 1 AC3 8 LYS A 30 GLN A 34 LYS A 84 THR A 87 SITE 2 AC3 8 GLU A 205 HOH A 409 HOH A 414 HOH A 519 CRYST1 121.488 181.138 34.829 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028712 0.00000