HEADER PLANT PROTEIN 15-MAY-18 6GIX TITLE WATER-SOLUBLE CHLOROPHYLL PROTEIN (WSCP) FROM LEPIDIUM VIRGINICUM TITLE 2 (MUTATION L91P) WITH CHLOROPHYLL-B CAVEAT 6GIX CHL A 1001 HAS WRONG CHIRALITY AT ATOM C8 CHL B 1001 HAS CAVEAT 2 6GIX WRONG CHIRALITY AT ATOM C8 CHL C 1001 HAS WRONG CHIRALITY CAVEAT 3 6GIX AT ATOM C8 CHL D 1001 HAS WRONG CHIRALITY AT ATOM C8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WATER-SOLUBLE CHLOROPHYLL PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPIDIUM VIRGINICUM; SOURCE 3 ORGANISM_TAXID: 59292; SOURCE 4 ORGAN: LEAF; SOURCE 5 TISSUE: LEAF; SOURCE 6 GENE: WSCP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TETRAMER, PLANT, LEPIDIUM VIRGINICUM, CHLOROPHYLL, WATER-SOLUBLE KEYWDS 2 CHLOROPHYLL PROTEIN, PHOTOOXIDATION, CHLOROPHYLL CARRIER, PLANT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.M.PALM,A.AGOSTINI,V.AVERESCH,P.GIRR,M.WERWIE,S.TAKAHASHI,H.SATOH, AUTHOR 2 E.JAENICKE,H.PAULSEN REVDAT 4 17-JAN-24 6GIX 1 REMARK REVDAT 3 24-APR-19 6GIX 1 CAVEAT REVDAT 2 14-NOV-18 6GIX 1 JRNL REVDAT 1 17-OCT-18 6GIX 0 JRNL AUTH D.M.PALM,A.AGOSTINI,V.AVERESCH,P.GIRR,M.WERWIE,S.TAKAHASHI, JRNL AUTH 2 H.SATOH,E.JAENICKE,H.PAULSEN JRNL TITL CHLOROPHYLL A/B BINDING-SPECIFICITY IN WATER-SOLUBLE JRNL TITL 2 CHLOROPHYLL PROTEIN. JRNL REF NAT PLANTS V. 4 920 2018 JRNL REFN ESSN 2055-0278 JRNL PMID 30297830 JRNL DOI 10.1038/S41477-018-0273-Z REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4917 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 264 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.423 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.303 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5830 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7997 ; 2.428 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.543 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;40.719 ;25.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 873 ;17.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ; 9.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4500 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2815 ; 3.536 ; 4.974 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3510 ; 6.288 ; 7.444 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3015 ; 2.652 ; 4.831 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8467 ; 9.872 ;62.996 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 179 B 4 179 10002 0.11 0.05 REMARK 3 2 A 3 178 C 3 178 10112 0.11 0.05 REMARK 3 3 A 3 178 D 3 178 10136 0.11 0.05 REMARK 3 4 B 4 179 C 4 179 10024 0.09 0.05 REMARK 3 5 B 4 179 D 4 179 10078 0.09 0.05 REMARK 3 6 C 3 179 D 3 179 10384 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA/K PHOSPHATE, 3.2M AMMONIUM REMARK 280 SULFATE, 5% SUCROSE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 28 REMARK 465 ASN A 29 REMARK 465 ASN A 30 REMARK 465 SER A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLU A 71 REMARK 465 GLY A 72 REMARK 465 ASP A 140 REMARK 465 ASN A 141 REMARK 465 GLY A 142 REMARK 465 GLU A 143 REMARK 465 ASP A 163 REMARK 465 ASP A 164 REMARK 465 ASP A 165 REMARK 465 SER A 166 REMARK 465 ASP A 167 REMARK 465 GLU A 168 REMARK 465 ASN A 169 REMARK 465 THR A 180 REMARK 465 ILE B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 28 REMARK 465 ASN B 29 REMARK 465 ASN B 30 REMARK 465 SER B 68 REMARK 465 SER B 69 REMARK 465 SER B 70 REMARK 465 GLU B 71 REMARK 465 GLY B 72 REMARK 465 ARG B 138 REMARK 465 TYR B 139 REMARK 465 ASP B 140 REMARK 465 ASN B 141 REMARK 465 GLY B 142 REMARK 465 GLU B 143 REMARK 465 ASP B 164 REMARK 465 ASP B 165 REMARK 465 SER B 166 REMARK 465 ASP B 167 REMARK 465 THR B 180 REMARK 465 ILE C 1 REMARK 465 ASN C 2 REMARK 465 ASP C 28 REMARK 465 ASN C 29 REMARK 465 ASN C 30 REMARK 465 SER C 68 REMARK 465 SER C 69 REMARK 465 SER C 70 REMARK 465 GLU C 71 REMARK 465 GLY C 72 REMARK 465 ASP C 140 REMARK 465 ASN C 141 REMARK 465 GLY C 142 REMARK 465 GLU C 143 REMARK 465 ASP C 164 REMARK 465 ASP C 165 REMARK 465 SER C 166 REMARK 465 ASP C 167 REMARK 465 THR C 180 REMARK 465 ILE D 1 REMARK 465 ASN D 2 REMARK 465 ASP D 3 REMARK 465 GLU D 4 REMARK 465 ASP D 28 REMARK 465 ASN D 29 REMARK 465 ASN D 30 REMARK 465 SER D 68 REMARK 465 SER D 69 REMARK 465 SER D 70 REMARK 465 GLU D 71 REMARK 465 GLY D 72 REMARK 465 ASP D 140 REMARK 465 ASN D 141 REMARK 465 GLY D 142 REMARK 465 GLU D 143 REMARK 465 THR D 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 129 O GLU C 106 4547 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 15 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU D 15 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 93 24.79 -78.63 REMARK 500 ASN A 129 -101.86 47.59 REMARK 500 PRO B 93 24.97 -78.73 REMARK 500 ASN B 129 -80.41 -66.44 REMARK 500 ASN B 132 18.16 59.51 REMARK 500 GLU C 4 57.69 -144.70 REMARK 500 PRO C 93 24.76 -78.33 REMARK 500 PRO D 93 26.26 -79.40 REMARK 500 ASN D 129 -78.47 -70.20 REMARK 500 ASP D 163 139.11 33.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 36 O REMARK 620 2 CHL A1001 NA 96.0 REMARK 620 3 CHL A1001 NB 85.6 89.0 REMARK 620 4 CHL A1001 NC 85.6 178.4 91.3 REMARK 620 5 CHL A1001 ND 96.9 91.2 177.5 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 36 O REMARK 620 2 CHL B1001 NA 92.7 REMARK 620 3 CHL B1001 NB 84.6 87.1 REMARK 620 4 CHL B1001 NC 88.8 178.5 93.3 REMARK 620 5 CHL B1001 ND 98.2 93.0 177.2 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL C1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO C 36 O REMARK 620 2 CHL C1001 NA 95.9 REMARK 620 3 CHL C1001 NB 86.4 88.3 REMARK 620 4 CHL C1001 NC 85.9 178.2 92.0 REMARK 620 5 CHL C1001 ND 96.0 92.0 177.5 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL D1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO D 36 O REMARK 620 2 CHL D1001 NA 95.2 REMARK 620 3 CHL D1001 NB 84.0 87.9 REMARK 620 4 CHL D1001 NC 86.4 178.3 92.4 REMARK 620 5 CHL D1001 ND 98.7 92.5 177.2 87.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CHL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CHL B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CHL C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CHL D 1001 DBREF 6GIX A 1 180 UNP O04797 O04797_LEPVR 27 206 DBREF 6GIX B 1 180 UNP O04797 O04797_LEPVR 27 206 DBREF 6GIX C 1 180 UNP O04797 O04797_LEPVR 27 206 DBREF 6GIX D 1 180 UNP O04797 O04797_LEPVR 27 206 SEQADV 6GIX PRO A 91 UNP O04797 LEU 117 ENGINEERED MUTATION SEQADV 6GIX PRO B 91 UNP O04797 LEU 117 ENGINEERED MUTATION SEQADV 6GIX PRO C 91 UNP O04797 LEU 117 ENGINEERED MUTATION SEQADV 6GIX PRO D 91 UNP O04797 LEU 117 ENGINEERED MUTATION SEQRES 1 A 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 A 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 A 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 A 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 A 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 A 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 A 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP PRO SEQRES 8 A 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 A 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 A 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 A 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 A 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 A 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 A 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR SEQRES 1 B 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 B 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 B 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 B 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 B 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 B 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 B 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP PRO SEQRES 8 B 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 B 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 B 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 B 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 B 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 B 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 B 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR SEQRES 1 C 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 C 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 C 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 C 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 C 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 C 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 C 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP PRO SEQRES 8 C 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 C 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 C 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 C 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 C 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 C 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 C 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR SEQRES 1 D 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 D 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 D 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 D 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 D 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 D 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 D 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP PRO SEQRES 8 D 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 D 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 D 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 D 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 D 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 D 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 D 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR HET CHL A1001 66 HET CHL B1001 66 HET CHL C1001 66 HET CHL D1001 66 HETNAM CHL CHLOROPHYLL B FORMUL 5 CHL 4(C55 H70 MG N4 O6 2+) FORMUL 9 HOH *50(H2 O) HELIX 1 AA1 SER A 117 PHE A 121 5 5 HELIX 2 AA2 SER B 117 PHE B 121 5 5 HELIX 3 AA3 SER C 117 PHE C 121 5 5 HELIX 4 AA4 SER D 117 PHE D 121 5 5 SHEET 1 AA1 2 TYR A 21 PRO A 25 0 SHEET 2 AA1 2 ILE A 173 GLU A 177 -1 O ARG A 176 N PHE A 22 SHEET 1 AA2 2 LEU A 34 ALA A 37 0 SHEET 2 AA2 2 GLY A 48 ARG A 51 -1 O VAL A 50 N VAL A 35 SHEET 1 AA3 6 VAL A 62 SER A 65 0 SHEET 2 AA3 6 ASN A 80 PHE A 85 -1 O ALA A 82 N SER A 65 SHEET 3 AA3 6 PHE A 122 LYS A 126 -1 O PHE A 122 N ILE A 81 SHEET 4 AA3 6 TYR A 134 ARG A 138 -1 O VAL A 137 N ARG A 123 SHEET 5 AA3 6 LYS A 145 SER A 152 -1 O LYS A 145 N ARG A 138 SHEET 6 AA3 6 GLY A 155 LEU A 160 -1 O ALA A 157 N THR A 150 SHEET 1 AA4 2 THR A 99 VAL A 100 0 SHEET 2 AA4 2 ILE A 109 ILE A 110 -1 O ILE A 110 N THR A 99 SHEET 1 AA5 2 TYR B 21 PRO B 25 0 SHEET 2 AA5 2 ILE B 173 GLU B 177 -1 O ARG B 176 N PHE B 22 SHEET 1 AA6 2 LEU B 34 ALA B 37 0 SHEET 2 AA6 2 GLY B 48 ARG B 51 -1 O VAL B 50 N VAL B 35 SHEET 1 AA7 4 VAL B 62 SER B 65 0 SHEET 2 AA7 4 ASN B 80 PHE B 85 -1 O ALA B 82 N SER B 65 SHEET 3 AA7 4 PHE B 122 LYS B 126 -1 O PHE B 122 N ILE B 81 SHEET 4 AA7 4 TYR B 134 VAL B 137 -1 O VAL B 137 N ARG B 123 SHEET 1 AA8 2 THR B 99 VAL B 100 0 SHEET 2 AA8 2 ILE B 109 ILE B 110 -1 O ILE B 110 N THR B 99 SHEET 1 AA9 2 VAL B 147 SER B 152 0 SHEET 2 AA9 2 GLY B 155 LEU B 160 -1 O ALA B 157 N THR B 150 SHEET 1 AB1 2 TYR C 21 PRO C 25 0 SHEET 2 AB1 2 ILE C 173 GLU C 177 -1 O ARG C 176 N PHE C 22 SHEET 1 AB2 2 LEU C 34 ALA C 37 0 SHEET 2 AB2 2 GLY C 48 ARG C 51 -1 O VAL C 50 N VAL C 35 SHEET 1 AB3 6 VAL C 62 SER C 65 0 SHEET 2 AB3 6 ASN C 80 PHE C 85 -1 O ALA C 82 N SER C 65 SHEET 3 AB3 6 PHE C 122 LYS C 126 -1 O PHE C 122 N ILE C 81 SHEET 4 AB3 6 TYR C 134 ARG C 138 -1 O VAL C 137 N ARG C 123 SHEET 5 AB3 6 LYS C 145 SER C 152 -1 O LYS C 145 N ARG C 138 SHEET 6 AB3 6 GLY C 155 LEU C 160 -1 O ALA C 157 N THR C 150 SHEET 1 AB4 2 THR C 99 VAL C 100 0 SHEET 2 AB4 2 ILE C 109 ILE C 110 -1 O ILE C 110 N THR C 99 SHEET 1 AB5 2 TYR D 21 PRO D 25 0 SHEET 2 AB5 2 ILE D 173 GLU D 177 -1 O ARG D 176 N PHE D 22 SHEET 1 AB6 2 LEU D 34 ALA D 37 0 SHEET 2 AB6 2 GLY D 48 ARG D 51 -1 O VAL D 50 N VAL D 35 SHEET 1 AB7 6 VAL D 62 SER D 65 0 SHEET 2 AB7 6 ASN D 80 PHE D 85 -1 O ALA D 82 N SER D 65 SHEET 3 AB7 6 PHE D 122 LYS D 126 -1 O PHE D 122 N ILE D 81 SHEET 4 AB7 6 TYR D 134 ARG D 138 -1 O VAL D 137 N ARG D 123 SHEET 5 AB7 6 LYS D 145 SER D 152 -1 O LYS D 145 N ARG D 138 SHEET 6 AB7 6 GLY D 155 LEU D 160 -1 O ALA D 157 N THR D 150 SHEET 1 AB8 2 THR D 99 VAL D 100 0 SHEET 2 AB8 2 ILE D 109 ILE D 110 -1 O ILE D 110 N THR D 99 SSBOND 1 CYS A 45 CYS A 92 1555 1555 2.04 SSBOND 2 CYS B 45 CYS B 92 1555 1555 2.04 SSBOND 3 CYS C 45 CYS C 92 1555 1555 2.03 SSBOND 4 CYS D 45 CYS D 92 1555 1555 2.06 LINK O PRO A 36 MG CHL A1001 1555 1555 2.37 LINK O PRO B 36 MG CHL B1001 1555 1555 2.37 LINK O PRO C 36 MG CHL C1001 1555 1555 2.36 LINK O PRO D 36 MG CHL D1001 1555 1555 2.34 CISPEP 1 CYS A 45 PRO A 46 0 -5.01 CISPEP 2 CYS B 45 PRO B 46 0 -4.09 CISPEP 3 CYS C 45 PRO C 46 0 -4.44 CISPEP 4 CYS D 45 PRO D 46 0 -5.06 SITE 1 AC1 20 VAL A 35 PRO A 36 ASN A 38 LEU A 44 SITE 2 AC1 20 LEU A 47 THR A 52 SER A 53 LEU A 54 SITE 3 AC1 20 GLN A 57 ILE A 89 PRO A 91 TRP A 154 SITE 4 AC1 20 HOH A1105 HOH A1107 LEU B 54 GLN B 57 SITE 5 AC1 20 PRO B 91 CHL B1001 LEU C 41 LEU D 44 SITE 1 AC2 19 GLN A 57 PRO A 91 TRP A 154 CHL A1001 SITE 2 AC2 19 HOH A1104 VAL B 35 PRO B 36 ASN B 38 SITE 3 AC2 19 LEU B 47 THR B 52 SER B 53 LEU B 54 SITE 4 AC2 19 GLN B 57 ILE B 89 PRO B 91 TRP B 154 SITE 5 AC2 19 HOH B1103 LEU C 44 LEU D 41 SITE 1 AC3 20 LEU A 41 LEU B 44 VAL C 35 PRO C 36 SITE 2 AC3 20 ASN C 38 LEU C 44 LEU C 47 THR C 52 SITE 3 AC3 20 SER C 53 LEU C 54 GLN C 57 ILE C 89 SITE 4 AC3 20 PRO C 91 TRP C 154 HOH C1104 LEU D 54 SITE 5 AC3 20 GLN D 57 ILE D 89 CHL D1001 HOH D1102 SITE 1 AC4 20 LEU A 44 GLN C 57 PRO C 91 CHL C1001 SITE 2 AC4 20 VAL D 35 PRO D 36 ALA D 37 ASN D 38 SITE 3 AC4 20 LEU D 44 LEU D 47 THR D 52 SER D 53 SITE 4 AC4 20 LEU D 54 GLN D 57 LEU D 60 ILE D 89 SITE 5 AC4 20 PRO D 91 TRP D 154 HOH D1108 HOH D1110 CRYST1 72.860 82.130 122.460 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008166 0.00000