HEADER HYDROLASE 15-MAY-18 6GJ0 TITLE HUMAN IMPASE WITH MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL MONOPHOSPHATASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMPASE 1,D-GALACTOSE 1-PHOSPHATE PHOSPHATASE,INOSITOL-1(OR COMPND 5 4)-MONOPHOSPHATASE 1,LITHIUM-SENSITIVE MYO-INOSITOL MONOPHOSPHATASE COMPND 6 A1; COMPND 7 EC: 3.1.3.25,3.1.3.94; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IMPA1, IMPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMPASE, COMPLEX, LITHIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.V.KRAFT,S.M.ROE REVDAT 2 17-JAN-24 6GJ0 1 COMPND REMARK LINK REVDAT 1 17-OCT-18 6GJ0 0 JRNL AUTH L.KRAFT,S.M.ROE,R.GILL,J.R.ATACK JRNL TITL CO-CRYSTALLIZATION OF HUMAN INOSITOL MONOPHOSPHATASE WITH JRNL TITL 2 THE LITHIUM MIMETIC L-690,330. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 973 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30289407 JRNL DOI 10.1107/S2059798318010380 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 67051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 6124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4828 - 5.3721 0.97 3960 219 0.1662 0.1746 REMARK 3 2 5.3721 - 4.2653 0.98 3957 217 0.1445 0.1899 REMARK 3 3 4.2653 - 3.7265 0.96 3996 139 0.1385 0.1715 REMARK 3 4 3.7265 - 3.3859 0.97 3971 189 0.1410 0.1639 REMARK 3 5 3.3859 - 3.1433 0.97 3976 210 0.1516 0.1988 REMARK 3 6 3.1433 - 2.9580 0.99 3992 225 0.1573 0.2076 REMARK 3 7 2.9580 - 2.8099 0.99 4102 153 0.1609 0.1811 REMARK 3 8 2.8099 - 2.6876 0.97 3941 182 0.1617 0.2135 REMARK 3 9 2.6876 - 2.5842 0.98 3971 243 0.1612 0.2044 REMARK 3 10 2.5842 - 2.4950 0.98 3985 187 0.1697 0.2305 REMARK 3 11 2.4950 - 2.4170 0.99 4057 205 0.1704 0.2129 REMARK 3 12 2.4170 - 2.3479 0.98 3958 284 0.1724 0.2170 REMARK 3 13 2.3479 - 2.2861 0.99 4019 206 0.1673 0.2191 REMARK 3 14 2.2861 - 2.2303 0.99 4075 144 0.1710 0.2230 REMARK 3 15 2.2303 - 2.1796 0.99 3982 238 0.1822 0.2116 REMARK 3 16 2.1796 - 2.1333 0.98 3992 221 0.1847 0.2406 REMARK 3 17 2.1333 - 2.0906 0.98 4024 216 0.1905 0.2650 REMARK 3 18 2.0906 - 2.0511 0.99 3988 232 0.1922 0.2217 REMARK 3 19 2.0511 - 2.0145 0.99 3996 222 0.1915 0.2568 REMARK 3 20 2.0145 - 1.9804 0.99 3936 222 0.1926 0.1753 REMARK 3 21 1.9804 - 1.9484 0.99 4102 219 0.2056 0.2874 REMARK 3 22 1.9484 - 1.9184 0.99 4001 140 0.2215 0.2437 REMARK 3 23 1.9184 - 1.8902 0.99 4020 206 0.2170 0.2534 REMARK 3 24 1.8902 - 1.8636 0.99 4128 187 0.2255 0.2699 REMARK 3 25 1.8636 - 1.8384 0.99 4010 166 0.2287 0.2552 REMARK 3 26 1.8384 - 1.8145 0.99 4064 212 0.2391 0.2835 REMARK 3 27 1.8145 - 1.7919 0.98 3943 226 0.2619 0.2891 REMARK 3 28 1.7919 - 1.7703 0.98 3932 205 0.2749 0.2950 REMARK 3 29 1.7703 - 1.7497 0.98 4040 215 0.2847 0.2887 REMARK 3 30 1.7497 - 1.7300 0.99 3998 194 0.3005 0.3302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4356 REMARK 3 ANGLE : 1.121 5901 REMARK 3 CHIRALITY : 0.043 681 REMARK 3 PLANARITY : 0.005 756 REMARK 3 DIHEDRAL : 14.414 1612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 42.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL VOLUMES (1 UL) OF THE PROTEIN IN REMARK 280 STORAGE BUFFER (20 MG/ML) AND RESERVOIR SOLUTION (0.12 M MNSO4, REMARK 280 0.1 M MES PH 5.5, 24 % (W/V) PEG 4000) WERE MIXED., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.67333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.83667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.83667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.67333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 679 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 OE1 OE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 59 CE NZ REMARK 470 GLU A 60 CD OE1 OE2 REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 116 NZ REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 GLN A 267 OE1 NE2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 GLU B 21 CD OE1 OE2 REMARK 470 LYS B 28 CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ARG B 101 CZ NH1 NH2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 135 CD CE NZ REMARK 470 GLU B 170 CD OE1 OE2 REMARK 470 LYS B 264 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 7 OE2 REMARK 480 LYS A 28 CE NZ REMARK 480 LYS A 52 CD CE NZ REMARK 480 LYS A 116 CD CE REMARK 480 GLN A 150 CD OE1 NE2 REMARK 480 GLU B 7 OE2 REMARK 480 GLN B 150 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 25 O HOH A 401 1.95 REMARK 500 OE1 GLN B 267 O HOH B 401 2.03 REMARK 500 O HOH B 434 O HOH B 549 2.15 REMARK 500 O HOH A 594 O HOH A 636 2.16 REMARK 500 O HOH B 580 O HOH B 596 2.18 REMARK 500 O HOH A 418 O HOH A 422 2.18 REMARK 500 O HOH B 441 O HOH B 498 2.19 REMARK 500 NH2 ARG A 191 O1 MES B 307 2.19 REMARK 500 OE1 GLN A 144 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -101.53 -106.81 REMARK 500 SER A 79 65.93 -105.75 REMARK 500 PRO A 103 35.59 -78.30 REMARK 500 LYS B 36 -98.04 -103.18 REMARK 500 PRO B 103 38.47 -78.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 685 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 MES A 307 S 99.2 REMARK 620 3 MES A 307 O1S 96.7 32.7 REMARK 620 4 MES A 307 O2S 99.6 32.3 65.1 REMARK 620 5 HOH A 429 O 83.5 140.3 173.0 108.0 REMARK 620 6 HOH A 432 O 165.6 94.8 96.9 90.4 83.6 REMARK 620 7 HOH A 456 O 87.3 120.2 87.5 152.2 99.5 88.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 ASP A 90 OD1 89.4 REMARK 620 3 ILE A 92 O 171.3 86.2 REMARK 620 4 MES A 307 S 96.8 134.4 91.6 REMARK 620 5 MES A 307 O1S 97.6 166.1 88.3 32.9 REMARK 620 6 MES A 307 O3S 97.8 101.8 90.5 32.6 65.4 REMARK 620 7 HOH A 492 O 87.4 104.1 86.4 121.2 88.3 153.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 OD2 REMARK 620 2 ASP A 93 OD1 93.6 REMARK 620 3 ASP A 220 OD1 93.3 95.4 REMARK 620 4 GOL A 304 O1 176.5 82.9 86.4 REMARK 620 5 MES A 307 O3S 90.7 98.4 165.4 90.4 REMARK 620 6 HOH A 528 O 103.8 162.6 83.5 79.7 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE1 REMARK 620 2 ASP B 90 OD1 85.9 REMARK 620 3 ILE B 92 O 168.0 87.5 REMARK 620 4 MES B 307 S 101.4 132.9 90.4 REMARK 620 5 MES B 307 O1S 99.8 101.4 91.3 31.6 REMARK 620 6 MES B 307 O3S 101.6 164.2 87.3 32.3 63.9 REMARK 620 7 HOH B 472 O 85.4 104.8 86.7 122.0 153.6 89.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE2 REMARK 620 2 MES B 307 S 100.1 REMARK 620 3 MES B 307 O2S 99.7 31.9 REMARK 620 4 MES B 307 O3S 98.3 32.7 64.5 REMARK 620 5 HOH B 428 O 166.6 93.2 90.3 94.0 REMARK 620 6 HOH B 436 O 81.8 138.8 106.9 171.4 86.7 REMARK 620 7 HOH B 447 O 89.2 122.2 153.6 89.7 85.7 98.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 90 OD2 REMARK 620 2 ASP B 93 OD1 92.9 REMARK 620 3 ASP B 220 OD1 90.3 96.3 REMARK 620 4 GOL B 304 O3 174.5 82.9 86.7 REMARK 620 5 MES B 307 O1S 94.7 97.8 164.7 89.3 REMARK 620 6 HOH B 517 O 103.8 163.3 82.9 80.4 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 307 DBREF 6GJ0 A 1 277 UNP P29218 IMPA1_HUMAN 1 277 DBREF 6GJ0 B 1 277 UNP P29218 IMPA1_HUMAN 1 277 SEQRES 1 A 277 MET ALA ASP PRO TRP GLN GLU CYS MET ASP TYR ALA VAL SEQRES 2 A 277 THR LEU ALA ARG GLN ALA GLY GLU VAL VAL CYS GLU ALA SEQRES 3 A 277 ILE LYS ASN GLU MET ASN VAL MET LEU LYS SER SER PRO SEQRES 4 A 277 VAL ASP LEU VAL THR ALA THR ASP GLN LYS VAL GLU LYS SEQRES 5 A 277 MET LEU ILE SER SER ILE LYS GLU LYS TYR PRO SER HIS SEQRES 6 A 277 SER PHE ILE GLY GLU GLU SER VAL ALA ALA GLY GLU LYS SEQRES 7 A 277 SER ILE LEU THR ASP ASN PRO THR TRP ILE ILE ASP PRO SEQRES 8 A 277 ILE ASP GLY THR THR ASN PHE VAL HIS ARG PHE PRO PHE SEQRES 9 A 277 VAL ALA VAL SER ILE GLY PHE ALA VAL ASN LYS LYS ILE SEQRES 10 A 277 GLU PHE GLY VAL VAL TYR SER CYS VAL GLU GLY LYS MET SEQRES 11 A 277 TYR THR ALA ARG LYS GLY LYS GLY ALA PHE CYS ASN GLY SEQRES 12 A 277 GLN LYS LEU GLN VAL SER GLN GLN GLU ASP ILE THR LYS SEQRES 13 A 277 SER LEU LEU VAL THR GLU LEU GLY SER SER ARG THR PRO SEQRES 14 A 277 GLU THR VAL ARG MET VAL LEU SER ASN MET GLU LYS LEU SEQRES 15 A 277 PHE CYS ILE PRO VAL HIS GLY ILE ARG SER VAL GLY THR SEQRES 16 A 277 ALA ALA VAL ASN MET CYS LEU VAL ALA THR GLY GLY ALA SEQRES 17 A 277 ASP ALA TYR TYR GLU MET GLY ILE HIS CYS TRP ASP VAL SEQRES 18 A 277 ALA GLY ALA GLY ILE ILE VAL THR GLU ALA GLY GLY VAL SEQRES 19 A 277 LEU MET ASP VAL THR GLY GLY PRO PHE ASP LEU MET SER SEQRES 20 A 277 ARG ARG VAL ILE ALA ALA ASN ASN ARG ILE LEU ALA GLU SEQRES 21 A 277 ARG ILE ALA LYS GLU ILE GLN VAL ILE PRO LEU GLN ARG SEQRES 22 A 277 ASP ASP GLU ASP SEQRES 1 B 277 MET ALA ASP PRO TRP GLN GLU CYS MET ASP TYR ALA VAL SEQRES 2 B 277 THR LEU ALA ARG GLN ALA GLY GLU VAL VAL CYS GLU ALA SEQRES 3 B 277 ILE LYS ASN GLU MET ASN VAL MET LEU LYS SER SER PRO SEQRES 4 B 277 VAL ASP LEU VAL THR ALA THR ASP GLN LYS VAL GLU LYS SEQRES 5 B 277 MET LEU ILE SER SER ILE LYS GLU LYS TYR PRO SER HIS SEQRES 6 B 277 SER PHE ILE GLY GLU GLU SER VAL ALA ALA GLY GLU LYS SEQRES 7 B 277 SER ILE LEU THR ASP ASN PRO THR TRP ILE ILE ASP PRO SEQRES 8 B 277 ILE ASP GLY THR THR ASN PHE VAL HIS ARG PHE PRO PHE SEQRES 9 B 277 VAL ALA VAL SER ILE GLY PHE ALA VAL ASN LYS LYS ILE SEQRES 10 B 277 GLU PHE GLY VAL VAL TYR SER CYS VAL GLU GLY LYS MET SEQRES 11 B 277 TYR THR ALA ARG LYS GLY LYS GLY ALA PHE CYS ASN GLY SEQRES 12 B 277 GLN LYS LEU GLN VAL SER GLN GLN GLU ASP ILE THR LYS SEQRES 13 B 277 SER LEU LEU VAL THR GLU LEU GLY SER SER ARG THR PRO SEQRES 14 B 277 GLU THR VAL ARG MET VAL LEU SER ASN MET GLU LYS LEU SEQRES 15 B 277 PHE CYS ILE PRO VAL HIS GLY ILE ARG SER VAL GLY THR SEQRES 16 B 277 ALA ALA VAL ASN MET CYS LEU VAL ALA THR GLY GLY ALA SEQRES 17 B 277 ASP ALA TYR TYR GLU MET GLY ILE HIS CYS TRP ASP VAL SEQRES 18 B 277 ALA GLY ALA GLY ILE ILE VAL THR GLU ALA GLY GLY VAL SEQRES 19 B 277 LEU MET ASP VAL THR GLY GLY PRO PHE ASP LEU MET SER SEQRES 20 B 277 ARG ARG VAL ILE ALA ALA ASN ASN ARG ILE LEU ALA GLU SEQRES 21 B 277 ARG ILE ALA LYS GLU ILE GLN VAL ILE PRO LEU GLN ARG SEQRES 22 B 277 ASP ASP GLU ASP HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET MES A 307 12 HET MN B 301 1 HET MN B 302 1 HET MN B 303 1 HET GOL B 304 6 HET GOL B 305 6 HET GOL B 306 6 HET MES B 307 12 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 6(MN 2+) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 9 MES 2(C6 H13 N O4 S) FORMUL 17 HOH *509(H2 O) HELIX 1 AA1 TRP A 5 LYS A 28 1 24 HELIX 2 AA2 THR A 44 TYR A 62 1 19 HELIX 3 AA3 GLU A 70 ALA A 75 1 6 HELIX 4 AA4 GLY A 94 ARG A 101 1 8 HELIX 5 AA5 ASP A 153 LYS A 156 5 4 HELIX 6 AA6 THR A 168 CYS A 184 1 17 HELIX 7 AA7 THR A 195 THR A 205 1 11 HELIX 8 AA8 HIS A 217 ALA A 231 1 15 HELIX 9 AA9 ASN A 255 ILE A 266 1 12 HELIX 10 AB1 TRP B 5 ILE B 27 1 23 HELIX 11 AB2 ALA B 45 TYR B 62 1 18 HELIX 12 AB3 GLU B 70 ALA B 75 1 6 HELIX 13 AB4 GLY B 94 ARG B 101 1 8 HELIX 14 AB5 ASP B 153 LYS B 156 5 4 HELIX 15 AB6 THR B 168 CYS B 184 1 17 HELIX 16 AB7 THR B 195 THR B 205 1 11 HELIX 17 AB8 HIS B 217 ALA B 231 1 15 HELIX 18 AB9 ASN B 255 ILE B 266 1 12 SHEET 1 AA1 2 MET A 34 LEU A 35 0 SHEET 2 AA1 2 LEU A 42 VAL A 43 -1 O VAL A 43 N MET A 34 SHEET 1 AA2 7 SER A 66 GLY A 69 0 SHEET 2 AA2 7 THR A 86 ASP A 93 1 O TRP A 87 N ILE A 68 SHEET 3 AA2 7 ALA A 106 VAL A 113 -1 O ALA A 106 N ASP A 93 SHEET 4 AA2 7 LYS A 116 SER A 124 -1 O GLU A 118 N PHE A 111 SHEET 5 AA2 7 LYS A 129 ARG A 134 -1 O TYR A 131 N VAL A 122 SHEET 6 AA2 7 ALA A 139 CYS A 141 -1 O PHE A 140 N THR A 132 SHEET 7 AA2 7 GLN A 144 LYS A 145 -1 O GLN A 144 N CYS A 141 SHEET 1 AA3 5 GLY A 189 ARG A 191 0 SHEET 2 AA3 5 LEU A 158 VAL A 160 1 N LEU A 159 O GLY A 189 SHEET 3 AA3 5 ALA A 210 MET A 214 1 O ALA A 210 N VAL A 160 SHEET 4 AA3 5 ARG A 249 ALA A 253 -1 O ALA A 252 N TYR A 211 SHEET 5 AA3 5 VAL A 234 MET A 236 -1 N VAL A 234 O ALA A 253 SHEET 1 AA4 2 VAL B 33 LEU B 35 0 SHEET 2 AA4 2 LEU B 42 THR B 44 -1 O VAL B 43 N MET B 34 SHEET 1 AA5 7 SER B 66 GLY B 69 0 SHEET 2 AA5 7 THR B 86 ASP B 93 1 O TRP B 87 N ILE B 68 SHEET 3 AA5 7 ALA B 106 VAL B 113 -1 O ALA B 106 N ASP B 93 SHEET 4 AA5 7 LYS B 116 SER B 124 -1 O GLU B 118 N PHE B 111 SHEET 5 AA5 7 LYS B 129 ARG B 134 -1 O TYR B 131 N VAL B 122 SHEET 6 AA5 7 GLY B 138 CYS B 141 -1 O PHE B 140 N THR B 132 SHEET 7 AA5 7 GLN B 144 LYS B 145 -1 O GLN B 144 N CYS B 141 SHEET 1 AA6 5 GLY B 189 ARG B 191 0 SHEET 2 AA6 5 LEU B 158 VAL B 160 1 N LEU B 159 O GLY B 189 SHEET 3 AA6 5 ALA B 210 MET B 214 1 O ALA B 210 N VAL B 160 SHEET 4 AA6 5 ARG B 249 ALA B 253 -1 O ALA B 252 N TYR B 211 SHEET 5 AA6 5 VAL B 234 MET B 236 -1 N VAL B 234 O ALA B 253 SSBOND 1 CYS A 24 CYS A 125 1555 1555 2.03 SSBOND 2 CYS B 24 CYS B 125 1555 1555 2.03 LINK OE2 GLU A 70 MN MN A 301 1555 1555 2.11 LINK OE1 GLU A 70 MN MN A 302 1555 1555 2.10 LINK OD1 ASP A 90 MN MN A 302 1555 1555 2.18 LINK OD2 ASP A 90 MN MN A 303 1555 1555 2.12 LINK O ILE A 92 MN MN A 302 1555 1555 2.19 LINK OD1 ASP A 93 MN MN A 303 1555 1555 2.14 LINK OD1 ASP A 220 MN MN A 303 1555 1555 2.03 LINK MN MN A 301 S MES A 307 1555 1555 2.79 LINK MN MN A 301 O1S MES A 307 1555 1555 2.37 LINK MN MN A 301 O2S MES A 307 1555 1555 2.18 LINK MN MN A 301 O HOH A 429 1555 1555 2.17 LINK MN MN A 301 O HOH A 432 1555 1555 2.24 LINK MN MN A 301 O HOH A 456 1555 1555 2.18 LINK MN MN A 302 S MES A 307 1555 1555 2.78 LINK MN MN A 302 O1S MES A 307 1555 1555 2.31 LINK MN MN A 302 O3S MES A 307 1555 1555 2.22 LINK MN MN A 302 O HOH A 492 1555 1555 2.25 LINK MN MN A 303 O1 GOL A 304 1555 1555 2.33 LINK MN MN A 303 O3S MES A 307 1555 1555 2.08 LINK MN MN A 303 O HOH A 528 1555 1555 2.46 LINK OE1 GLU B 70 MN MN B 302 1555 1555 2.12 LINK OE2 GLU B 70 MN MN B 303 1555 1555 2.04 LINK OD2 ASP B 90 MN MN B 301 1555 1555 2.18 LINK OD1 ASP B 90 MN MN B 302 1555 1555 2.11 LINK O ILE B 92 MN MN B 302 1555 1555 2.21 LINK OD1 ASP B 93 MN MN B 301 1555 1555 2.17 LINK OD1 ASP B 220 MN MN B 301 1555 1555 2.02 LINK MN MN B 301 O3 GOL B 304 1555 1555 2.34 LINK MN MN B 301 O1S MES B 307 1555 1555 2.04 LINK MN MN B 301 O HOH B 517 1555 1555 2.43 LINK MN MN B 302 S MES B 307 1555 1555 2.84 LINK MN MN B 302 O1S MES B 307 1555 1555 2.27 LINK MN MN B 302 O3S MES B 307 1555 1555 2.35 LINK MN MN B 302 O HOH B 472 1555 1555 2.17 LINK MN MN B 303 S MES B 307 1555 1555 2.81 LINK MN MN B 303 O2S MES B 307 1555 1555 2.13 LINK MN MN B 303 O3S MES B 307 1555 1555 2.35 LINK MN MN B 303 O HOH B 428 1555 1555 2.09 LINK MN MN B 303 O HOH B 436 1555 1555 2.27 LINK MN MN B 303 O HOH B 447 1555 1555 2.18 CISPEP 1 ILE A 185 PRO A 186 0 2.03 CISPEP 2 ILE B 185 PRO B 186 0 -0.24 SITE 1 AC1 5 GLU A 70 MES A 307 HOH A 429 HOH A 432 SITE 2 AC1 5 HOH A 456 SITE 1 AC2 5 GLU A 70 ASP A 90 ILE A 92 MES A 307 SITE 2 AC2 5 HOH A 492 SITE 1 AC3 6 ASP A 90 ASP A 93 ASP A 220 GOL A 304 SITE 2 AC3 6 MES A 307 HOH A 528 SITE 1 AC4 10 ASP A 93 THR A 195 ALA A 196 GLU A 213 SITE 2 AC4 10 ASP A 220 MN A 303 MES A 307 HOH A 446 SITE 3 AC4 10 HOH A 528 HOH A 552 SITE 1 AC5 7 LEU A 163 SER A 192 HOH A 407 HOH A 411 SITE 2 AC5 7 ILE B 190 ARG B 191 SER B 192 SITE 1 AC6 4 ARG A 248 LEU A 271 GLN A 272 HOH A 557 SITE 1 AC7 16 GLU A 70 ASP A 90 ILE A 92 ASP A 93 SITE 2 AC7 16 GLY A 94 THR A 95 THR A 96 MN A 301 SITE 3 AC7 16 MN A 302 MN A 303 GOL A 304 HOH A 426 SITE 4 AC7 16 HOH A 489 HOH A 528 HOH A 574 HOH A 585 SITE 1 AC8 6 ASP B 90 ASP B 93 ASP B 220 GOL B 304 SITE 2 AC8 6 MES B 307 HOH B 517 SITE 1 AC9 5 GLU B 70 ASP B 90 ILE B 92 MES B 307 SITE 2 AC9 5 HOH B 472 SITE 1 AD1 5 GLU B 70 MES B 307 HOH B 428 HOH B 436 SITE 2 AD1 5 HOH B 447 SITE 1 AD2 11 ASP B 93 THR B 195 ALA B 196 GLU B 213 SITE 2 AD2 11 ASP B 220 MN B 301 MES B 307 HOH B 413 SITE 3 AD2 11 HOH B 441 HOH B 517 HOH B 540 SITE 1 AD3 8 VAL A 99 HIS A 100 GLN B 151 LYS B 156 SITE 2 AD3 8 HIS B 188 ASP B 209 HOH B 534 HOH B 539 SITE 1 AD4 4 VAL B 73 LYS B 78 SER B 79 ASP B 277 SITE 1 AD5 19 ARG A 191 HOH A 536 GLU B 70 ASP B 90 SITE 2 AD5 19 ILE B 92 ASP B 93 GLY B 94 THR B 95 SITE 3 AD5 19 THR B 96 ASN B 97 GLY B 194 MN B 301 SITE 4 AD5 19 MN B 302 MN B 303 GOL B 304 HOH B 428 SITE 5 AD5 19 HOH B 429 HOH B 496 HOH B 517 CRYST1 84.940 84.940 152.510 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011773 0.006797 0.000000 0.00000 SCALE2 0.000000 0.013594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006557 0.00000