HEADER SIGNALING PROTEIN 16-MAY-18 6GJ5 TITLE CRYSTAL STRUCTURE OF KRAS G12D (GPPCP) IN COMPLEX WITH 15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS 4B, K-RAS 2, KI-RAS, C-K-RAS, C-KI-RAS, GTPASE KRAS, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KESSLER,D.M.MCCONNELL,A.MANTOULIDIS REVDAT 5 17-JAN-24 6GJ5 1 REMARK REVDAT 4 30-MAR-22 6GJ5 1 LINK REVDAT 3 14-AUG-19 6GJ5 1 JRNL REVDAT 2 07-AUG-19 6GJ5 1 JRNL REVDAT 1 31-JUL-19 6GJ5 0 JRNL AUTH D.KESSLER,M.GMACHL,A.MANTOULIDIS,L.J.MARTIN,A.ZOEPHEL, JRNL AUTH 2 M.MAYER,A.GOLLNER,D.COVINI,S.FISCHER,T.GERSTBERGER, JRNL AUTH 3 T.GMASCHITZ,C.GOODWIN,P.GREB,D.HARING,W.HELA,J.HOFFMANN, JRNL AUTH 4 J.KAROLYI-OEZGUER,P.KNESL,S.KORNIGG,M.KOEGL,R.KOUSEK, JRNL AUTH 5 L.LAMARRE,F.MOSER,S.MUNICO-MARTINEZ,C.PEINSIPP,J.PHAN, JRNL AUTH 6 J.RINNENTHAL,J.SAI,C.SALAMON,Y.SCHERBANTIN,K.SCHIPANY, JRNL AUTH 7 R.SCHNITZER,A.SCHRENK,B.SHARPS,G.SISZLER,Q.SUN,A.WATERSON, JRNL AUTH 8 B.WOLKERSTORFER,M.ZEEB,M.PEARSON,S.W.FESIK,D.B.MCCONNELL JRNL TITL DRUGGING AN UNDRUGGABLE POCKET ON KRAS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 15823 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31332011 JRNL DOI 10.1073/PNAS.1904529116 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13RC1_2961: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7591 - 3.8537 0.96 2797 138 0.1640 0.1662 REMARK 3 2 3.8537 - 3.0592 1.00 2818 135 0.1617 0.1839 REMARK 3 3 3.0592 - 2.6727 1.00 2787 156 0.1848 0.1966 REMARK 3 4 2.6727 - 2.4284 1.00 2789 170 0.1927 0.2021 REMARK 3 5 2.4284 - 2.2543 1.00 2772 152 0.1853 0.1893 REMARK 3 6 2.2543 - 2.1214 1.00 2766 156 0.1892 0.2454 REMARK 3 7 2.1214 - 2.0152 1.00 2779 129 0.1930 0.2062 REMARK 3 8 2.0152 - 1.9275 1.00 2806 123 0.1962 0.2194 REMARK 3 9 1.9275 - 1.8533 1.00 2813 121 0.1991 0.2183 REMARK 3 10 1.8533 - 1.7893 1.00 2795 138 0.2114 0.2684 REMARK 3 11 1.7893 - 1.7334 1.00 2768 129 0.2051 0.2212 REMARK 3 12 1.7334 - 1.6838 1.00 2767 137 0.2096 0.2449 REMARK 3 13 1.6838 - 1.6395 1.00 2781 151 0.2155 0.2549 REMARK 3 14 1.6395 - 1.5995 1.00 2705 154 0.2234 0.2620 REMARK 3 15 1.5995 - 1.5631 1.00 2763 145 0.2286 0.2484 REMARK 3 16 1.5631 - 1.5299 1.00 2750 139 0.2284 0.2583 REMARK 3 17 1.5299 - 1.4993 0.99 2761 120 0.2542 0.2908 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2820 REMARK 3 ANGLE : 1.120 3836 REMARK 3 CHIRALITY : 0.074 422 REMARK 3 PLANARITY : 0.004 487 REMARK 3 DIHEDRAL : 19.219 1068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6428 -20.1485 -8.4746 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.1086 REMARK 3 T33: 0.1791 T12: -0.0095 REMARK 3 T13: 0.0377 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.7183 L22: 2.3961 REMARK 3 L33: 2.6347 L12: 1.0148 REMARK 3 L13: -0.1984 L23: -0.2572 REMARK 3 S TENSOR REMARK 3 S11: -0.2062 S12: 0.0744 S13: -0.6270 REMARK 3 S21: 0.0587 S22: 0.0806 S23: -0.0408 REMARK 3 S31: 0.2519 S32: -0.2397 S33: 0.1242 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9041 -23.1811 -6.0535 REMARK 3 T TENSOR REMARK 3 T11: 0.2965 T22: 0.1243 REMARK 3 T33: 0.2210 T12: 0.0041 REMARK 3 T13: 0.0489 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 4.1069 L22: 3.0213 REMARK 3 L33: 2.0361 L12: 1.3095 REMARK 3 L13: -1.0578 L23: -0.5390 REMARK 3 S TENSOR REMARK 3 S11: -0.2067 S12: -0.0643 S13: -0.5094 REMARK 3 S21: 0.0668 S22: 0.0192 S23: -0.2180 REMARK 3 S31: 0.2468 S32: 0.0714 S33: 0.1896 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0591 -21.7985 -22.8266 REMARK 3 T TENSOR REMARK 3 T11: 0.4816 T22: 0.3568 REMARK 3 T33: 0.2476 T12: -0.1581 REMARK 3 T13: 0.0941 T23: -0.0797 REMARK 3 L TENSOR REMARK 3 L11: 7.5544 L22: 5.1357 REMARK 3 L33: 5.3631 L12: -1.3024 REMARK 3 L13: -1.7168 L23: 0.9848 REMARK 3 S TENSOR REMARK 3 S11: -1.0002 S12: 1.0798 S13: -0.5372 REMARK 3 S21: -1.1093 S22: 0.6067 S23: -0.2953 REMARK 3 S31: 0.1420 S32: 0.0818 S33: 0.0098 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0580 -10.2744 -18.6948 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2840 REMARK 3 T33: 0.1350 T12: -0.0467 REMARK 3 T13: 0.0018 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 3.4168 L22: 2.8403 REMARK 3 L33: 2.4859 L12: 1.8092 REMARK 3 L13: 0.3159 L23: -0.4595 REMARK 3 S TENSOR REMARK 3 S11: -0.4290 S12: 0.9467 S13: 0.2073 REMARK 3 S21: -0.5546 S22: 0.3069 S23: -0.0273 REMARK 3 S31: -0.0031 S32: -0.1076 S33: 0.0919 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3635 -7.4895 -11.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.0842 REMARK 3 T33: 0.1776 T12: -0.0226 REMARK 3 T13: 0.0038 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 2.7825 L22: 3.6079 REMARK 3 L33: 3.1358 L12: 0.1594 REMARK 3 L13: -0.6570 L23: 0.9344 REMARK 3 S TENSOR REMARK 3 S11: -0.1976 S12: 0.1251 S13: 0.8382 REMARK 3 S21: -0.2437 S22: 0.1136 S23: -0.1467 REMARK 3 S31: -0.3309 S32: -0.1696 S33: 0.1181 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0141 -7.5786 -7.1057 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.1070 REMARK 3 T33: 0.1767 T12: 0.0262 REMARK 3 T13: -0.0048 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 4.3216 L22: 2.1856 REMARK 3 L33: 1.1746 L12: 1.5864 REMARK 3 L13: -1.0028 L23: 0.1204 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: 0.1497 S13: 0.5453 REMARK 3 S21: 0.0262 S22: 0.1085 S23: 0.0995 REMARK 3 S31: -0.1576 S32: -0.0584 S33: -0.0253 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2965 7.9912 -39.9202 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.2969 REMARK 3 T33: 0.1604 T12: -0.0176 REMARK 3 T13: -0.0006 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 3.9856 L22: 1.7564 REMARK 3 L33: 1.9592 L12: -0.1078 REMARK 3 L13: -0.4855 L23: -0.6689 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: 0.5375 S13: 0.1019 REMARK 3 S21: -0.1479 S22: 0.0039 S23: -0.1544 REMARK 3 S31: -0.0153 S32: 0.4037 S33: 0.0116 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9041 6.2417 -49.8978 REMARK 3 T TENSOR REMARK 3 T11: 0.3124 T22: 0.7466 REMARK 3 T33: 0.1918 T12: -0.1478 REMARK 3 T13: -0.0759 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.4859 L22: 3.1503 REMARK 3 L33: 0.0770 L12: -1.0113 REMARK 3 L13: -0.0596 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: 1.6835 S13: 0.1773 REMARK 3 S21: -0.9412 S22: 0.1132 S23: -0.1983 REMARK 3 S31: -0.1204 S32: 0.1385 S33: -0.0564 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8259 11.4386 -41.8319 REMARK 3 T TENSOR REMARK 3 T11: 0.2191 T22: 0.3964 REMARK 3 T33: 0.2795 T12: -0.0419 REMARK 3 T13: 0.0009 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 6.3004 L22: 5.2742 REMARK 3 L33: 8.7819 L12: 4.4263 REMARK 3 L13: 3.3783 L23: 6.1938 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: 0.6151 S13: 0.4939 REMARK 3 S21: -0.0339 S22: 0.0880 S23: 0.1079 REMARK 3 S31: -0.1845 S32: 0.3735 S33: -0.0391 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2325 4.1855 -35.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.2259 REMARK 3 T33: 0.1616 T12: 0.0152 REMARK 3 T13: -0.0207 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 4.6501 L22: 2.2336 REMARK 3 L33: 3.1434 L12: 0.6648 REMARK 3 L13: -0.8924 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.1283 S12: -0.0513 S13: -0.3396 REMARK 3 S21: 0.1142 S22: 0.0131 S23: -0.3274 REMARK 3 S31: 0.1455 S32: 0.4868 S33: 0.0344 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6218 -5.0760 -30.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.3233 T22: 0.2419 REMARK 3 T33: 0.3369 T12: 0.0118 REMARK 3 T13: 0.0134 T23: 0.1080 REMARK 3 L TENSOR REMARK 3 L11: 4.1242 L22: 3.2195 REMARK 3 L33: 4.7378 L12: -2.9153 REMARK 3 L13: 2.9804 L23: -0.7237 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.6473 S13: -1.1327 REMARK 3 S21: 0.2204 S22: -0.1540 S23: -0.1414 REMARK 3 S31: 1.1339 S32: -0.1023 S33: -0.0721 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4080 4.4011 -30.9113 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1689 REMARK 3 T33: 0.1615 T12: -0.0251 REMARK 3 T13: 0.0308 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 3.1402 L22: 3.0979 REMARK 3 L33: 2.8670 L12: 1.1569 REMARK 3 L13: -1.6657 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.2124 S13: -0.2049 REMARK 3 S21: 0.3118 S22: -0.0687 S23: 0.1596 REMARK 3 S31: 0.1770 S32: -0.0502 S33: -0.0140 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8141 10.4893 -28.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1822 REMARK 3 T33: 0.1616 T12: -0.0241 REMARK 3 T13: 0.0034 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 3.3715 L22: 3.0444 REMARK 3 L33: 2.1221 L12: 0.9537 REMARK 3 L13: -1.3980 L23: -0.5527 REMARK 3 S TENSOR REMARK 3 S11: 0.1439 S12: -0.2028 S13: 0.2653 REMARK 3 S21: 0.3376 S22: -0.0599 S23: 0.0969 REMARK 3 S31: -0.1661 S32: 0.2076 S33: -0.0580 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : MONOCHROMATOR: C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49619 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 36.748 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3350, 0.2 M POTASSIUM ACETATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.02150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 319 O HOH A 466 1.88 REMARK 500 O HOH A 455 O HOH B 450 1.91 REMARK 500 O HOH B 395 O HOH B 436 1.94 REMARK 500 SD MET A 72 O HOH A 310 1.94 REMARK 500 O HOH B 329 O HOH B 443 2.00 REMARK 500 NH1 ARG A 41 O HOH A 301 2.02 REMARK 500 O HOH A 321 O HOH A 422 2.04 REMARK 500 O HOH B 326 O HOH B 403 2.08 REMARK 500 O HOH A 342 O HOH A 344 2.13 REMARK 500 O HOH A 373 O HOH A 449 2.16 REMARK 500 O HOH B 362 O HOH B 455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 386 O HOH A 418 2455 1.67 REMARK 500 O HOH A 360 O HOH A 438 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -64.36 -93.20 REMARK 500 ILE B 36 -63.84 -93.72 REMARK 500 ARG B 149 3.23 81.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.6 REMARK 620 3 GCP A 201 O2G 172.0 90.0 REMARK 620 4 GCP A 201 O2B 95.2 175.1 92.4 REMARK 620 5 HOH A 327 O 85.1 94.3 92.6 89.9 REMARK 620 6 HOH A 337 O 90.2 87.6 92.5 88.0 174.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 THR B 35 OG1 82.5 REMARK 620 3 GCP B 201 O2G 171.2 88.9 REMARK 620 4 GCP B 201 O1B 94.8 176.5 93.8 REMARK 620 5 HOH B 337 O 87.5 90.2 90.4 91.9 REMARK 620 6 HOH B 340 O 89.3 90.7 93.0 87.1 176.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GCP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F0N A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GCP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F0N B 203 DBREF 6GJ5 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6GJ5 B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6GJ5 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6GJ5 ASP A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 6GJ5 SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6GJ5 GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6GJ5 ASP B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 6GJ5 SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS HET GCP A 201 32 HET MG A 202 1 HET F0N A 203 24 HET GCP B 201 32 HET MG B 202 1 HET F0N B 203 24 HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM F0N (3~{S})-3-[2-[(2~{R})-PYRROLIDIN-2-YL]-1~{H}-INDOL-3- HETNAM 2 F0N YL]-2,3-DIHYDROISOINDOL-1-ONE FORMUL 3 GCP 2(C11 H18 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 F0N 2(C20 H19 N3 O) FORMUL 9 HOH *358(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 MET A 67 GLY A 75 1 9 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 GLN B 70 GLY B 75 1 6 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 167 1 17 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 GLU B 37 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 THR B 58 -1 O ASP B 57 N ASP B 38 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N TYR B 4 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.05 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.04 LINK O2G GCP A 201 MG MG A 202 1555 1555 1.98 LINK O2B GCP A 201 MG MG A 202 1555 1555 2.12 LINK MG MG A 202 O HOH A 327 1555 1555 2.03 LINK MG MG A 202 O HOH A 337 1555 1555 2.15 LINK OG SER B 17 MG MG B 202 1555 1555 2.09 LINK OG1 THR B 35 MG MG B 202 1555 1555 2.08 LINK O2G GCP B 201 MG MG B 202 1555 1555 1.95 LINK O1B GCP B 201 MG MG B 202 1555 1555 2.06 LINK MG MG B 202 O HOH B 337 1555 1555 2.07 LINK MG MG B 202 O HOH B 340 1555 1555 2.15 SITE 1 AC1 30 ALA A 11 ASP A 12 GLY A 13 VAL A 14 SITE 2 AC1 30 GLY A 15 LYS A 16 SER A 17 ALA A 18 SITE 3 AC1 30 PHE A 28 VAL A 29 ASP A 30 GLU A 31 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 ASN A 116 SITE 5 AC1 30 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 6 AC1 30 ALA A 146 LYS A 147 MG A 202 HOH A 304 SITE 7 AC1 30 HOH A 327 HOH A 337 HOH A 350 HOH A 351 SITE 8 AC1 30 HOH A 409 HOH A 415 SITE 1 AC2 5 SER A 17 THR A 35 GCP A 201 HOH A 327 SITE 2 AC2 5 HOH A 337 SITE 1 AC3 9 LEU A 6 VAL A 7 GLU A 37 SER A 39 SITE 2 AC3 9 ASP A 54 MET A 67 TYR A 71 THR A 74 SITE 3 AC3 9 LYS B 169 SITE 1 AC4 29 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC4 29 SER B 17 ALA B 18 PHE B 28 VAL B 29 SITE 3 AC4 29 ASP B 30 GLU B 31 TYR B 32 PRO B 34 SITE 4 AC4 29 THR B 35 GLY B 60 ASN B 116 LYS B 117 SITE 5 AC4 29 ASP B 119 LEU B 120 SER B 145 ALA B 146 SITE 6 AC4 29 LYS B 147 MG B 202 HOH B 312 HOH B 323 SITE 7 AC4 29 HOH B 333 HOH B 337 HOH B 340 HOH B 342 SITE 8 AC4 29 HOH B 423 SITE 1 AC5 5 SER B 17 THR B 35 GCP B 201 HOH B 337 SITE 2 AC5 5 HOH B 340 SITE 1 AC6 8 LEU B 6 VAL B 7 SER B 39 ASP B 54 SITE 2 AC6 8 LEU B 56 GLN B 70 TYR B 71 THR B 74 CRYST1 42.074 40.043 94.284 90.00 101.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023768 0.000000 0.004680 0.00000 SCALE2 0.000000 0.024973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010810 0.00000