HEADER HYDROLASE 16-MAY-18 6GJ9 TITLE PURPLE ACID PHYTASE FROM WHEAT ISOFORM B2 - REGENERATION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURPLE ACID PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 3 ORGANISM_COMMON: WHEAT; SOURCE 4 ORGANISM_TAXID: 4565; SOURCE 5 TISSUE: ALEURONE VACUOLE; SOURCE 6 GENE: PAPHY; SOURCE 7 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: KM71H(OCH1::G418R); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGAPZALPHAA KEYWDS EC 3.1.3.26, HYDROLASE, PURPLE ACID PHYTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FABA-RODRIGUEZ,C.A.BREARLEY,A.M.HEMMINGS REVDAT 3 17-JAN-24 6GJ9 1 HETSYN REVDAT 2 29-JUL-20 6GJ9 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 27-NOV-19 6GJ9 0 JRNL AUTH R.FABA-RODRIGUEZ,G.DIONISIO,H.BRINCH-PEDERSEN,C.A.BREARLEY, JRNL AUTH 2 A.M.HEMMINGS JRNL TITL CRYSTAL STRUCTURE OF A CEREAL PURPLE ACID PHYTASE PROVIDES JRNL TITL 2 INSIGHTS TO PHYTATE DEGRADATION IN PLANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 63506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7750 - 5.0010 0.98 2610 141 0.1446 0.1485 REMARK 3 2 5.0010 - 3.9707 1.00 2627 149 0.1117 0.1346 REMARK 3 3 3.9707 - 3.4692 0.99 2633 127 0.1185 0.1673 REMARK 3 4 3.4692 - 3.1521 0.99 2647 110 0.1277 0.1769 REMARK 3 5 3.1521 - 2.9263 1.00 2610 147 0.1315 0.1727 REMARK 3 6 2.9263 - 2.7538 0.99 2679 121 0.1282 0.1813 REMARK 3 7 2.7538 - 2.6159 1.00 2623 131 0.1335 0.1911 REMARK 3 8 2.6159 - 2.5021 0.99 2647 138 0.1312 0.1814 REMARK 3 9 2.5021 - 2.4058 0.99 2600 145 0.1313 0.2106 REMARK 3 10 2.4058 - 2.3228 1.00 2635 147 0.1293 0.2054 REMARK 3 11 2.3228 - 2.2501 1.00 2655 129 0.1304 0.1821 REMARK 3 12 2.2501 - 2.1858 0.99 2615 171 0.1311 0.2149 REMARK 3 13 2.1858 - 2.1283 0.99 2615 148 0.1287 0.1928 REMARK 3 14 2.1283 - 2.0764 0.99 2648 131 0.1371 0.2192 REMARK 3 15 2.0764 - 2.0292 0.99 2600 129 0.1745 0.2481 REMARK 3 16 2.0292 - 1.9860 0.99 2571 153 0.1960 0.2433 REMARK 3 17 1.9860 - 1.9463 0.98 2675 82 0.1798 0.2270 REMARK 3 18 1.9463 - 1.9095 0.98 2615 136 0.2003 0.2731 REMARK 3 19 1.9095 - 1.8754 0.99 2626 145 0.2067 0.2420 REMARK 3 20 1.8754 - 1.8436 0.99 2608 135 0.2111 0.2555 REMARK 3 21 1.8436 - 1.8139 0.98 2518 158 0.2184 0.2909 REMARK 3 22 1.8139 - 1.7860 0.99 2676 145 0.2295 0.2903 REMARK 3 23 1.7860 - 1.7597 0.99 2613 142 0.2411 0.2933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4317 REMARK 3 ANGLE : 1.060 5924 REMARK 3 CHIRALITY : 0.067 645 REMARK 3 PLANARITY : 0.005 767 REMARK 3 DIHEDRAL : 14.663 2490 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GIT REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM THIOCYANATE; 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.48550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.65337 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.83933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 63.48550 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 36.65337 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.83933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 63.48550 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 36.65337 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.83933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.30674 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 71.67867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 73.30674 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 71.67867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 73.30674 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.67867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 ARG A 21 REMARK 465 LEU A 509 REMARK 465 LYS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 23 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 804 O HOH A 1073 1.92 REMARK 500 O HOH A 1248 O HOH A 1275 1.94 REMARK 500 O HOH A 769 O HOH A 1032 2.01 REMARK 500 O HOH A 1018 O HOH A 1255 2.08 REMARK 500 O3 PO4 A 611 O HOH A 701 2.09 REMARK 500 OE1 GLN A 127 O HOH A 702 2.10 REMARK 500 O HOH A 887 O HOH A 1221 2.10 REMARK 500 OG SER A 249 O HOH A 703 2.10 REMARK 500 O HOH A 901 O HOH A 1169 2.15 REMARK 500 O HOH A 704 O HOH A 803 2.16 REMARK 500 O HOH A 1014 O HOH A 1314 2.18 REMARK 500 O HOH A 727 O HOH A 1208 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 778 O HOH A 927 2555 2.18 REMARK 500 O HOH A 1194 O HOH A 1353 8554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 109 59.55 -91.41 REMARK 500 LEU A 177 67.52 -151.55 REMARK 500 LEU A 199 46.97 -90.91 REMARK 500 LEU A 199 43.52 -88.05 REMARK 500 ASP A 201 80.41 64.32 REMARK 500 VAL A 202 -69.11 -92.50 REMARK 500 GLN A 264 -159.05 -141.36 REMARK 500 PRO A 280 47.73 -77.10 REMARK 500 HIS A 377 -50.29 74.22 REMARK 500 ASP A 404 44.44 -101.41 REMARK 500 ASN A 475 -164.02 -168.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1368 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1369 DISTANCE = 9.66 ANGSTROMS REMARK 525 HOH A1370 DISTANCE = 10.10 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 606 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 174 OD2 REMARK 620 2 ASP A 201 OD2 83.7 REMARK 620 3 TYR A 204 OH 105.2 96.5 REMARK 620 4 HIS A 379 NE2 99.6 167.0 94.8 REMARK 620 5 PO4 A 611 O3 150.7 90.6 103.9 80.4 REMARK 620 6 HOH A 701 O 88.1 81.2 166.1 86.3 62.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD2 REMARK 620 2 ASN A 258 OD1 102.1 REMARK 620 3 HIS A 340 NE2 88.0 92.8 REMARK 620 4 HIS A 377 ND1 161.4 96.3 88.3 REMARK 620 5 PO4 A 611 O2 98.3 77.9 169.7 88.3 REMARK 620 6 HOH A 701 O 78.5 143.6 123.4 88.5 66.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GIT RELATED DB: PDB REMARK 900 6GIT CONTAINS THE SAME PROTEIN IN ITS PRODUCT COMPLEX DBREF 6GJ9 A 1 510 UNP C4PKL0 C4PKL0_WHEAT 21 530 SEQADV 6GJ9 HIS A 511 UNP C4PKL0 EXPRESSION TAG SEQADV 6GJ9 HIS A 512 UNP C4PKL0 EXPRESSION TAG SEQADV 6GJ9 HIS A 513 UNP C4PKL0 EXPRESSION TAG SEQADV 6GJ9 HIS A 514 UNP C4PKL0 EXPRESSION TAG SEQADV 6GJ9 HIS A 515 UNP C4PKL0 EXPRESSION TAG SEQADV 6GJ9 HIS A 516 UNP C4PKL0 EXPRESSION TAG SEQRES 1 A 516 GLU PRO ALA SER THR LEU GLU GLY PRO SER ARG PRO VAL SEQRES 2 A 516 THR VAL PRO LEU ARG GLU ASP ARG GLY HIS ALA VAL ASP SEQRES 3 A 516 LEU PRO ASP THR ASP PRO ARG VAL GLN ARG ARG VAL THR SEQRES 4 A 516 GLY TRP ALA PRO GLU GLN ILE ALA VAL ALA LEU SER ALA SEQRES 5 A 516 ALA PRO THR SER ALA TRP VAL SER TRP ILE THR GLY ASP SEQRES 6 A 516 PHE GLN MET GLY GLY ALA VAL LYS PRO LEU ASP PRO GLY SEQRES 7 A 516 THR VAL GLY SER VAL VAL ARG TYR GLY LEU ALA ALA ASP SEQRES 8 A 516 SER LEU VAL ARG GLU ALA THR GLY ASP ALA LEU VAL TYR SEQRES 9 A 516 SER GLN LEU TYR PRO PHE GLU GLY LEU GLN ASN TYR THR SEQRES 10 A 516 SER GLY ILE ILE HIS HIS VAL ARG LEU GLN GLY LEU GLU SEQRES 11 A 516 PRO GLY THR LYS TYR TYR TYR GLN CYS GLY ASP PRO SER SEQRES 12 A 516 ILE PRO GLY ALA MET SER ALA VAL HIS ALA PHE ARG THR SEQRES 13 A 516 MET PRO ALA VAL GLY PRO ARG SER TYR PRO GLY ARG ILE SEQRES 14 A 516 ALA VAL VAL GLY ASP LEU GLY LEU THR TYR ASN THR THR SEQRES 15 A 516 SER THR VAL GLU HIS MET ALA SER ASN GLN PRO ASP LEU SEQRES 16 A 516 VAL LEU LEU LEU GLY ASP VAL SER TYR ALA ASN LEU TYR SEQRES 17 A 516 LEU THR ASN GLY THR GLY THR ASP CYS TYR SER CYS SER SEQRES 18 A 516 PHE ALA LYS SER THR PRO ILE HIS GLU THR TYR GLN PRO SEQRES 19 A 516 ARG TRP ASP TYR TRP GLY ARG TYR MET GLU PRO VAL THR SEQRES 20 A 516 SER SER THR PRO MET MET VAL VAL GLU GLY ASN HIS GLU SEQRES 21 A 516 ILE GLU GLN GLN ILE GLY ASN LYS THR PHE ALA ALA TYR SEQRES 22 A 516 SER ALA ARG PHE ALA PHE PRO SER MET GLU SER GLU SER SEQRES 23 A 516 PHE SER PRO PHE TYR TYR SER PHE ASP ALA GLY GLY ILE SEQRES 24 A 516 HIS PHE ILE MET LEU ALA ALA TYR ALA ASP TYR SER LYS SEQRES 25 A 516 SER GLY GLU GLN TYR ARG TRP LEU GLU LYS ASP LEU ALA SEQRES 26 A 516 LYS VAL ASP ARG SER VAL THR PRO TRP LEU VAL ALA GLY SEQRES 27 A 516 TRP HIS ALA PRO TRP TYR SER THR TYR LYS ALA HIS TYR SEQRES 28 A 516 ARG GLU ALA GLU CYS MET ARG VAL ALA MET GLU GLU LEU SEQRES 29 A 516 LEU TYR SER TYR GLY LEU ASP ILE VAL PHE THR GLY HIS SEQRES 30 A 516 VAL HIS ALA TYR GLU ARG SER ASN ARG VAL PHE ASN TYR SEQRES 31 A 516 THR LEU ASP PRO CYS GLY ALA VAL HIS ILE SER VAL GLY SEQRES 32 A 516 ASP GLY GLY ASN ARG GLU LYS MET ALA THR THR HIS ALA SEQRES 33 A 516 ASP ASP PRO GLY ARG CYS PRO GLU PRO MET SER THR PRO SEQRES 34 A 516 ASP ALA PHE MET GLY GLY PHE CYS ALA PHE ASN PHE THR SEQRES 35 A 516 SER GLY PRO ALA ALA GLY SER PHE CYS TRP ASP ARG GLN SEQRES 36 A 516 PRO ASP TYR SER ALA TYR ARG GLU SER SER PHE GLY HIS SEQRES 37 A 516 GLY ILE LEU GLU VAL LYS ASN GLU THR HIS ALA LEU TRP SEQRES 38 A 516 LYS TRP HIS ARG ASN GLN ASP LEU TYR GLN GLY ALA VAL SEQRES 39 A 516 GLY ASP GLU ILE TYR ILE VAL ARG GLU PRO GLU ARG CYS SEQRES 40 A 516 LEU LEU LYS HIS HIS HIS HIS HIS HIS HET NAG B 1 27 HET NAG B 2 28 HET FE A 601 1 HET FE A 602 1 HET NAG A 603 28 HET NAG A 604 28 HET NAG A 605 28 HET NAG A 606 28 HET NAG A 607 28 HET NAG A 608 28 HET PO4 A 611 5 HET EDO A 612 10 HET PEG A 613 17 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FE FE (III) ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 3 FE 2(FE 3+) FORMUL 11 PO4 O4 P 3- FORMUL 12 EDO C2 H6 O2 FORMUL 13 PEG C4 H10 O3 FORMUL 14 HOH *670(H2 O) HELIX 1 AA1 LEU A 6 GLY A 8 5 3 HELIX 2 AA2 ASP A 76 VAL A 80 5 5 HELIX 3 AA3 THR A 178 ASN A 191 1 14 HELIX 4 AA4 TYR A 204 TYR A 208 5 5 HELIX 5 AA5 CYS A 217 ALA A 223 1 7 HELIX 6 AA6 LYS A 224 THR A 226 5 3 HELIX 7 AA7 GLN A 233 SER A 248 1 16 HELIX 8 AA8 GLY A 257 ILE A 261 5 5 HELIX 9 AA9 GLN A 264 LYS A 268 5 5 HELIX 10 AB1 PHE A 270 PHE A 277 1 8 HELIX 11 AB2 GLY A 314 LYS A 326 1 13 HELIX 12 AB3 ALA A 354 TYR A 368 1 15 HELIX 13 AB4 GLU A 424 THR A 428 5 5 HELIX 14 AB5 GLU A 503 LEU A 508 1 6 SHEET 1 AA1 7 ALA A 3 SER A 4 0 SHEET 2 AA1 7 ASP A 496 VAL A 501 1 O TYR A 499 N ALA A 3 SHEET 3 AA1 7 HIS A 478 ARG A 485 -1 N ALA A 479 O ILE A 500 SHEET 4 AA1 7 GLY A 467 VAL A 473 -1 N GLU A 472 O LEU A 480 SHEET 5 AA1 7 ILE A 169 VAL A 172 -1 N ILE A 169 O LEU A 471 SHEET 6 AA1 7 LEU A 195 LEU A 198 1 O LEU A 195 N ALA A 170 SHEET 7 AA1 7 MET A 252 VAL A 254 1 O MET A 253 N LEU A 198 SHEET 1 AA2 8 VAL A 13 THR A 14 0 SHEET 2 AA2 8 SER A 459 GLU A 463 1 O ALA A 460 N VAL A 13 SHEET 3 AA2 8 TYR A 381 SER A 384 -1 N ARG A 383 O TYR A 461 SHEET 4 AA2 8 VAL A 398 VAL A 402 -1 O SER A 401 N GLU A 382 SHEET 5 AA2 8 ILE A 372 THR A 375 1 N VAL A 373 O ILE A 400 SHEET 6 AA2 8 TRP A 334 GLY A 338 1 N ALA A 337 O PHE A 374 SHEET 7 AA2 8 ILE A 299 MET A 303 1 N HIS A 300 O TRP A 334 SHEET 8 AA2 8 TYR A 292 ALA A 296 -1 N PHE A 294 O PHE A 301 SHEET 1 AA3 4 PRO A 43 LEU A 50 0 SHEET 2 AA3 4 ALA A 57 THR A 63 -1 O TRP A 58 N ALA A 49 SHEET 3 AA3 4 ILE A 120 LEU A 126 -1 O LEU A 126 N ALA A 57 SHEET 4 AA3 4 ASP A 100 LEU A 102 -1 N LEU A 102 O ILE A 121 SHEET 1 AA4 3 GLN A 67 MET A 68 0 SHEET 2 AA4 3 TYR A 116 THR A 117 -1 O THR A 117 N GLN A 67 SHEET 3 AA4 3 SER A 105 GLN A 106 -1 N GLN A 106 O TYR A 116 SHEET 1 AA5 4 ARG A 95 THR A 98 0 SHEET 2 AA5 4 VAL A 83 GLY A 87 -1 N TYR A 86 O ARG A 95 SHEET 3 AA5 4 LYS A 134 GLY A 140 -1 O TYR A 136 N GLY A 87 SHEET 4 AA5 4 HIS A 152 ARG A 155 -1 O PHE A 154 N TYR A 135 SHEET 1 AA6 2 VAL A 387 PHE A 388 0 SHEET 2 AA6 2 THR A 391 LEU A 392 -1 O THR A 391 N PHE A 388 SSBOND 1 CYS A 217 CYS A 220 1555 1555 2.05 SSBOND 2 CYS A 356 CYS A 437 1555 1555 2.07 SSBOND 3 CYS A 395 CYS A 507 1555 1555 2.03 SSBOND 4 CYS A 422 CYS A 451 1555 1555 2.05 LINK ND2 ASN A 115 C1 NAG A 603 1555 1555 1.37 LINK ND2 ASN A 180 C1 NAG A 604 1555 1555 1.34 LINK ND2 ASN A 211 C1 NAG A 605 1555 1555 1.39 LINK ND2 ASN A 389 C1 NAG A 607 1555 1555 1.36 LINK ND2 ASN A 440 C1 NAG A 608 1555 1555 1.38 LINK ND2 ASN A 475 C1 NAG B 1 1555 1555 1.41 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK OD2 ASP A 174 FE FE A 601 1555 1555 1.96 LINK OD2 ASP A 201 FE FE A 601 1555 1555 2.34 LINK OD2 ASP A 201 FE FE A 602 1555 1555 2.16 LINK OH TYR A 204 FE FE A 601 1555 1555 1.91 LINK OD1 ASN A 258 FE FE A 602 1555 1555 2.10 LINK NE2 HIS A 340 FE FE A 602 1555 1555 2.14 LINK ND1 HIS A 377 FE FE A 602 1555 1555 2.10 LINK NE2 HIS A 379 FE FE A 601 1555 1555 2.48 LINK FE FE A 601 O3 PO4 A 611 1555 1555 2.03 LINK FE FE A 601 O HOH A 701 1555 1555 1.99 LINK FE FE A 602 O2 PO4 A 611 1555 1555 2.73 LINK FE FE A 602 O HOH A 701 1555 1555 2.31 CRYST1 126.971 126.971 107.518 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007876 0.004547 0.000000 0.00000 SCALE2 0.000000 0.009094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009301 0.00000