HEADER IMMUNE SYSTEM 16-MAY-18 6GJS TITLE HUMAN NBD1 OF CFTR IN COMPLEX WITH NANOBODIES D12 AND T4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 7,CHANNEL COMPND 5 CONDUCTANCE-CONTROLLING ATPASE,CAMP-DEPENDENT CHLORIDE CHANNEL; COMPND 6 EC: 3.6.3.49; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NANOBODY D12; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NANOBODY T4; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_COMMON: LLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 16 ORGANISM_COMMON: LLAMA; SOURCE 17 ORGANISM_TAXID: 9844; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTIC FIBROSIS, CFTR, NANOBODIES, THERMAL STABILIZATION, KEYWDS 2 CONFORMATIONAL DYNAMICS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.SIGOILLOT,M.OVERTUS,M.GRODECKA,D.SCHOLL,A.GARCIA-PINO,T.LAEREMANS, AUTHOR 2 L.HE,E.PARDON,E.HILDEBRANDT,I.URBATSCH,J.STEYAERT,J.R.RIORDAN, AUTHOR 3 C.GOVAERTS REVDAT 3 13-NOV-24 6GJS 1 REMARK REVDAT 2 17-JAN-24 6GJS 1 LINK REVDAT 1 26-JUN-19 6GJS 0 JRNL AUTH M.SIGOILLOT,M.OVERTUS,M.GRODECKA,D.SCHOLL,A.GARCIA-PINO, JRNL AUTH 2 T.LAEREMANS,L.HE,E.PARDON,E.HILDEBRANDT,I.URBATSCH, JRNL AUTH 3 J.STEYAERT,J.R.RIORDAN,C.GOVAERTS JRNL TITL DOMAIN-INTERFACE DYNAMICS OF CFTR REVEALED BY STABILIZING JRNL TITL 2 NANOBODIES. JRNL REF NAT COMMUN V. 10 2636 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31201318 JRNL DOI 10.1038/S41467-019-10714-Y REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 39026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1952 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2766 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2433 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2627 REMARK 3 BIN R VALUE (WORKING SET) : 0.2407 REMARK 3 BIN FREE R VALUE : 0.2912 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01400 REMARK 3 B22 (A**2) : -3.53270 REMARK 3 B33 (A**2) : 1.51880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.79520 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.255 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.153 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.136 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.143 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3586 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4862 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1245 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 85 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 542 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3586 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 480 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4468 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 23.9621 6.2198 30.2296 REMARK 3 T TENSOR REMARK 3 T11: -0.0100 T22: -0.0776 REMARK 3 T33: -0.0660 T12: -0.0575 REMARK 3 T13: 0.0002 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.9493 L22: 1.1147 REMARK 3 L33: 1.0823 L12: -0.3811 REMARK 3 L13: 0.2960 L23: 0.1223 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.1844 S13: -0.0316 REMARK 3 S21: -0.0837 S22: 0.0248 S23: 0.0356 REMARK 3 S31: -0.1044 S32: 0.0840 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 40.9803 10.4722 9.5925 REMARK 3 T TENSOR REMARK 3 T11: -0.0257 T22: 0.1124 REMARK 3 T33: -0.1764 T12: -0.0847 REMARK 3 T13: 0.0349 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.5338 L22: 0.2705 REMARK 3 L33: 2.1228 L12: 0.0671 REMARK 3 L13: -0.5843 L23: -1.1112 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.1175 S13: 0.0280 REMARK 3 S21: 0.0443 S22: 0.1023 S23: -0.0093 REMARK 3 S31: -0.0764 S32: 0.0510 S33: -0.1793 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 37.2414 12.5400 51.2213 REMARK 3 T TENSOR REMARK 3 T11: -0.0608 T22: -0.0086 REMARK 3 T33: -0.0217 T12: 0.0129 REMARK 3 T13: -0.0270 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.0580 L22: 1.2562 REMARK 3 L33: 0.7822 L12: -0.2670 REMARK 3 L13: -0.9204 L23: 0.4257 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.1187 S13: 0.0889 REMARK 3 S21: -0.0063 S22: 0.0932 S23: 0.0360 REMARK 3 S31: -0.0366 S32: -0.0361 S33: -0.0281 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07603 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG PH 4.0, 25 % PEG 1500, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 637 REMARK 465 PRO A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 SER A 641 REMARK 465 SER A 642 REMARK 465 LYS A 643 REMARK 465 LEU A 644 REMARK 465 MET A 645 REMARK 465 GLY A 646 REMARK 465 SER B 123 REMARK 465 ALA B 124 REMARK 465 ALA B 125 REMARK 465 ALA B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 GLY B 133 REMARK 465 ALA B 134 REMARK 465 ALA B 135 REMARK 465 GLU B 136 REMARK 465 GLN B 137 REMARK 465 LYS B 138 REMARK 465 LEU B 139 REMARK 465 ILE B 140 REMARK 465 SER B 141 REMARK 465 GLU B 142 REMARK 465 GLU B 143 REMARK 465 ASP B 144 REMARK 465 LEU B 145 REMARK 465 ASN B 146 REMARK 465 GLY B 147 REMARK 465 ALA B 148 REMARK 465 ALA B 149 REMARK 465 ALA C 118 REMARK 465 ALA C 119 REMARK 465 ALA C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 HIS C 126 REMARK 465 GLY C 127 REMARK 465 ALA C 128 REMARK 465 ALA C 129 REMARK 465 GLU C 130 REMARK 465 GLN C 131 REMARK 465 LYS C 132 REMARK 465 LEU C 133 REMARK 465 ILE C 134 REMARK 465 SER C 135 REMARK 465 GLU C 136 REMARK 465 GLU C 137 REMARK 465 ASP C 138 REMARK 465 LEU C 139 REMARK 465 ASN C 140 REMARK 465 GLY C 141 REMARK 465 ALA C 142 REMARK 465 ALA C 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 386 OG REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 LYS A 447 NZ REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 481 CD CE NZ REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 TYR A 515 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 532 CG CD CE NZ REMARK 470 LYS A 593 CD CE NZ REMARK 470 LEU A 636 CG CD1 CD2 REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 64 CE NZ REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 107 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 115 CG CD OE1 NE2 REMARK 470 SER B 122 OG REMARK 470 GLN C 1 CG CD OE1 NE2 REMARK 470 SER C 27 OG REMARK 470 THR C 28 OG1 CG2 REMARK 470 ARG C 101 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 536 -126.44 52.52 REMARK 500 CYS A 590 -67.10 -93.51 REMARK 500 LYS A 593 -65.13 -96.82 REMARK 500 ASN B 32 -115.74 -93.85 REMARK 500 SER C 52 -110.45 -100.92 REMARK 500 ARG C 101 -17.87 89.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 465 OG1 REMARK 620 2 GLN A 493 OE1 84.1 REMARK 620 3 ATP A 702 O2B 93.5 173.6 REMARK 620 4 ATP A 702 O2G 178.4 94.6 87.9 REMARK 620 5 HOH A 846 O 89.0 83.0 91.1 91.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 801 O REMARK 620 2 HOH A 895 O 114.5 REMARK 620 3 HOH A1031 O 121.9 91.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 DBREF 6GJS A 387 646 UNP Q20BJ8 Q20BJ8_HUMAN 387 646 DBREF 6GJS B 1 149 PDB 6GJS 6GJS 1 149 DBREF 6GJS C 1 143 PDB 6GJS 6GJS 1 143 SEQADV 6GJS SER A 386 UNP Q20BJ8 EXPRESSION TAG SEQRES 1 A 229 SER LEU THR THR THR GLU VAL VAL MET GLU ASN VAL THR SEQRES 2 A 229 ALA PHE TRP GLU GLU GLY GLY THR PRO VAL LEU LYS ASP SEQRES 3 A 229 ILE ASN PHE LYS ILE GLU ARG GLY GLN LEU LEU ALA VAL SEQRES 4 A 229 ALA GLY SER THR GLY ALA GLY LYS THR SER LEU LEU MET SEQRES 5 A 229 MET ILE MET GLY GLU LEU GLU PRO SER GLU GLY LYS ILE SEQRES 6 A 229 LYS HIS SER GLY ARG ILE SER PHE CYS SER GLN PHE SER SEQRES 7 A 229 TRP ILE MET PRO GLY THR ILE LYS GLU ASN ILE ILE PHE SEQRES 8 A 229 GLY VAL SER TYR ASP GLU TYR ARG TYR ARG SER VAL ILE SEQRES 9 A 229 LYS ALA CYS GLN LEU GLU GLU ASP ILE SER LYS PHE ALA SEQRES 10 A 229 GLU LYS ASP ASN ILE VAL LEU GLY GLU GLY GLY ILE THR SEQRES 11 A 229 LEU SER GLY GLY GLN ARG ALA ARG ILE SER LEU ALA ARG SEQRES 12 A 229 ALA VAL TYR LYS ASP ALA ASP LEU TYR LEU LEU ASP SER SEQRES 13 A 229 PRO PHE GLY TYR LEU ASP VAL LEU THR GLU LYS GLU ILE SEQRES 14 A 229 PHE GLU SER CYS VAL CYS LYS LEU MET ALA ASN LYS THR SEQRES 15 A 229 ARG ILE LEU VAL THR SER LYS MET GLU HIS LEU LYS LYS SEQRES 16 A 229 ALA ASP LYS ILE LEU ILE LEU HIS GLU GLY SER SER TYR SEQRES 17 A 229 PHE TYR GLY THR PHE SER GLU LEU GLN ASN LEU GLN PRO SEQRES 18 A 229 ASP PHE SER SER LYS LEU MET GLY SEQRES 1 B 149 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 149 ALA GLY SER SER LEU ARG LEU ALA CYS ALA ALA THR GLY SEQRES 3 B 149 SER ILE ARG SER ILE ASN ASN MET GLY TRP TYR ARG GLN SEQRES 4 B 149 ALA PRO GLY LYS GLN ARG GLY MET VAL ALA ILE ILE THR SEQRES 5 B 149 ARG VAL GLY ASN THR ASP TYR ALA ASP SER VAL LYS GLY SEQRES 6 B 149 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 149 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 149 THR TYR TYR CYS HIS ALA GLU ILE THR GLU GLN SER ARG SEQRES 9 B 149 PRO PHE TYR LEU THR ASP ASP TYR TRP GLY GLN GLY THR SEQRES 10 B 149 GLN VAL THR VAL SER SER ALA ALA ALA HIS HIS HIS HIS SEQRES 11 B 149 HIS HIS GLY ALA ALA GLU GLN LYS LEU ILE SER GLU GLU SEQRES 12 B 149 ASP LEU ASN GLY ALA ALA SEQRES 1 C 143 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 143 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 143 SER THR PHE ALA ILE ILE ALA MET GLY TRP TYR ARG GLN SEQRES 4 C 143 ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA VAL ILE SER SEQRES 5 C 143 THR GLY ASP THR ARG TYR ALA ASP SER VAL LYS GLY ARG SEQRES 6 C 143 PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL TYR SEQRES 7 C 143 LEU GLN MET ASP SER LEU ARG PRO GLU ASP THR ALA VAL SEQRES 8 C 143 TYR TYR CYS ASN ALA ALA VAL GLN VAL ARG ASP TYR ARG SEQRES 9 C 143 ASN TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 10 C 143 ALA ALA ALA HIS HIS HIS HIS HIS HIS GLY ALA ALA GLU SEQRES 11 C 143 GLN LYS LEU ILE SER GLU GLU ASP LEU ASN GLY ALA ALA HET MG A 701 1 HET ATP A 702 31 HET MG A 703 1 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 4 MG 2(MG 2+) FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 7 HOH *426(H2 O) HELIX 1 AA1 GLY A 463 MET A 472 1 10 HELIX 2 AA2 ILE A 502 PHE A 508 1 7 HELIX 3 AA3 ASP A 513 CYS A 524 1 12 HELIX 4 AA4 LEU A 526 LYS A 532 1 7 HELIX 5 AA5 GLU A 535 ASN A 538 5 4 HELIX 6 AA6 SER A 549 LYS A 564 1 16 HELIX 7 AA7 ASP A 579 CYS A 590 1 12 HELIX 8 AA8 LYS A 606 LYS A 611 1 6 HELIX 9 AA9 THR A 629 ASN A 635 1 7 HELIX 10 AB1 LYS B 86 THR B 90 5 5 HELIX 11 AB2 ASP C 60 LYS C 63 5 4 HELIX 12 AB3 ARG C 85 THR C 89 5 5 SHEET 1 AA1 3 LEU A 441 GLU A 449 0 SHEET 2 AA1 3 THR A 390 ALA A 399 -1 N VAL A 392 O ILE A 448 SHEET 3 AA1 3 GLU A 479 HIS A 484 -1 O LYS A 481 N GLU A 395 SHEET 1 AA2 6 ILE A 488 CYS A 491 0 SHEET 2 AA2 6 LEU A 568 ASP A 572 1 O LEU A 570 N SER A 489 SHEET 3 AA2 6 ARG A 600 VAL A 603 1 O VAL A 603 N LEU A 571 SHEET 4 AA2 6 LEU A 453 ALA A 457 1 N LEU A 454 O ARG A 600 SHEET 5 AA2 6 LYS A 615 HIS A 620 1 O LEU A 619 N ALA A 457 SHEET 6 AA2 6 SER A 623 GLY A 628 -1 O PHE A 626 N ILE A 618 SHEET 1 AA3 2 GLY A 500 THR A 501 0 SHEET 2 AA3 2 VAL A 540 LEU A 541 -1 O LEU A 541 N GLY A 500 SHEET 1 AA4 4 VAL B 2 SER B 7 0 SHEET 2 AA4 4 LEU B 18 GLY B 26 -1 O THR B 25 N GLN B 3 SHEET 3 AA4 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA4 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 AA5 6 GLY B 10 VAL B 12 0 SHEET 2 AA5 6 THR B 117 VAL B 121 1 O THR B 120 N VAL B 12 SHEET 3 AA5 6 ALA B 91 GLU B 101 -1 N TYR B 93 O THR B 117 SHEET 4 AA5 6 ILE B 28 GLN B 39 -1 N ARG B 29 O THR B 100 SHEET 5 AA5 6 GLY B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 AA5 6 THR B 57 TYR B 59 -1 O ASP B 58 N ILE B 50 SHEET 1 AA6 4 GLY B 10 VAL B 12 0 SHEET 2 AA6 4 THR B 117 VAL B 121 1 O THR B 120 N VAL B 12 SHEET 3 AA6 4 ALA B 91 GLU B 101 -1 N TYR B 93 O THR B 117 SHEET 4 AA6 4 ASP B 110 TRP B 113 -1 O ASP B 110 N ILE B 99 SHEET 1 AA7 4 VAL C 2 SER C 7 0 SHEET 2 AA7 4 LEU C 18 GLY C 26 -1 O SER C 21 N SER C 7 SHEET 3 AA7 4 THR C 76 MET C 81 -1 O MET C 81 N LEU C 18 SHEET 4 AA7 4 PHE C 66 ASP C 71 -1 N SER C 69 O TYR C 78 SHEET 1 AA8 6 GLY C 10 GLN C 13 0 SHEET 2 AA8 6 THR C 111 SER C 116 1 O THR C 114 N GLY C 10 SHEET 3 AA8 6 ALA C 90 GLN C 99 -1 N TYR C 92 O THR C 111 SHEET 4 AA8 6 ALA C 30 GLN C 39 -1 N ILE C 32 O ALA C 97 SHEET 5 AA8 6 GLU C 46 ILE C 51 -1 O VAL C 48 N TRP C 36 SHEET 6 AA8 6 THR C 56 TYR C 58 -1 O ARG C 57 N VAL C 50 SHEET 1 AA9 4 GLY C 10 GLN C 13 0 SHEET 2 AA9 4 THR C 111 SER C 116 1 O THR C 114 N GLY C 10 SHEET 3 AA9 4 ALA C 90 GLN C 99 -1 N TYR C 92 O THR C 111 SHEET 4 AA9 4 TYR C 103 TRP C 107 -1 O ARG C 104 N VAL C 98 SSBOND 1 CYS B 22 CYS B 95 1555 1555 2.02 SSBOND 2 CYS C 22 CYS C 94 1555 1555 2.07 LINK OG1 THR A 465 MG MG A 701 1555 1555 2.01 LINK OE1 GLN A 493 MG MG A 701 1555 1555 1.97 LINK MG MG A 701 O2B ATP A 702 1555 1555 1.99 LINK MG MG A 701 O2G ATP A 702 1555 1555 2.09 LINK MG MG A 701 O HOH A 846 1555 1555 2.13 LINK MG MG A 703 O HOH A 801 1555 1555 2.60 LINK MG MG A 703 O HOH A 895 1555 1555 2.55 LINK MG MG A 703 O HOH A1031 1555 1555 2.58 SITE 1 AC1 4 THR A 465 GLN A 493 ATP A 702 HOH A 846 SITE 1 AC2 19 TRP A 401 VAL A 440 THR A 460 GLY A 461 SITE 2 AC2 19 ALA A 462 GLY A 463 LYS A 464 THR A 465 SITE 3 AC2 19 SER A 466 GLN A 493 MG A 701 HOH A 806 SITE 4 AC2 19 HOH A 823 HOH A 846 HOH A 906 HOH A 908 SITE 5 AC2 19 HOH A 925 HOH A 967 HOH A 976 SITE 1 AC3 3 HOH A 801 HOH A 895 HOH A1031 CRYST1 152.200 41.600 99.300 90.00 120.56 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006570 0.000000 0.003879 0.00000 SCALE2 0.000000 0.024038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011695 0.00000