HEADER HYDROLASE 17-MAY-18 6GJU TITLE HUMAN NBD1 OF CFTR IN COMPLEX WITH NANOBODIES T2A AND T4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 7,CHANNEL COMPND 5 CONDUCTANCE-CONTROLLING ATPASE,CAMP-DEPENDENT CHLORIDE CHANNEL; COMPND 6 EC: 3.6.3.49; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NANOBODY T4; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NANOBODY T2A; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_COMMON: LLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 16 ORGANISM_COMMON: LLAMA; SOURCE 17 ORGANISM_TAXID: 9844; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTIC FIBROSIS, CFTR, NANOBODIES, THERMAL STABILIZATION, KEYWDS 2 CONFORMATIONAL DYNAMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SIGOILLOT,M.OVERTUS,M.GRODECKA,D.SCHOLL,A.GARCIA-PINO,T.LAEREMANS, AUTHOR 2 L.HE,E.PARDON,E.HILDEBRANDT,I.URBATSCH,J.STEYAERT,J.R.RIORDAN, AUTHOR 3 C.GOVAERTS REVDAT 3 17-JAN-24 6GJU 1 REMARK REVDAT 2 21-AUG-19 6GJU 1 REMARK REVDAT 1 26-JUN-19 6GJU 0 JRNL AUTH M.SIGOILLOT,M.OVERTUS,M.GRODECKA,D.SCHOLL,A.GARCIA-PINO, JRNL AUTH 2 T.LAEREMANS,L.HE,E.PARDON,E.HILDEBRANDT,I.URBATSCH, JRNL AUTH 3 J.STEYAERT,J.R.RIORDAN,C.GOVAERTS JRNL TITL DOMAIN-INTERFACE DYNAMICS OF CFTR REVEALED BY STABILIZING JRNL TITL 2 NANOBODIES. JRNL REF NAT COMMUN V. 10 2636 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31201318 JRNL DOI 10.1038/S41467-019-10714-Y REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 800 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2849 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3174 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2707 REMARK 3 BIN R VALUE (WORKING SET) : 0.3121 REMARK 3 BIN FREE R VALUE : 0.4209 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.31570 REMARK 3 B22 (A**2) : -23.93010 REMARK 3 B33 (A**2) : 16.61440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.452 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.659 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.285 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.602 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.285 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3230 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4364 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1092 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 481 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3230 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 424 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3418 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.51 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.26 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.5540 -7.0530 27.1849 REMARK 3 T TENSOR REMARK 3 T11: -0.1544 T22: 0.0179 REMARK 3 T33: -0.1406 T12: 0.1542 REMARK 3 T13: 0.0067 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6874 L22: 0.0000 REMARK 3 L33: 3.8850 L12: 0.5692 REMARK 3 L13: -0.7931 L23: -0.5753 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.1291 S13: -0.0232 REMARK 3 S21: 0.0412 S22: -0.0749 S23: -0.0262 REMARK 3 S31: -0.0600 S32: 0.0111 S33: 0.0384 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -11.9765 11.2624 9.6785 REMARK 3 T TENSOR REMARK 3 T11: -0.0930 T22: -0.1198 REMARK 3 T33: -0.0678 T12: 0.0847 REMARK 3 T13: 0.0474 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.5021 L22: 0.9989 REMARK 3 L33: 2.0307 L12: -1.0013 REMARK 3 L13: 1.0360 L23: 0.6761 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: -0.1670 S13: -0.0014 REMARK 3 S21: 0.0763 S22: -0.0082 S23: 0.0691 REMARK 3 S31: -0.1280 S32: -0.0643 S33: 0.0510 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -10.9379 -30.5650 18.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.0319 T22: -0.0537 REMARK 3 T33: -0.2340 T12: 0.1027 REMARK 3 T13: 0.0907 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0485 L22: 2.8308 REMARK 3 L33: 2.7315 L12: 0.1731 REMARK 3 L13: 0.8240 L23: 1.8146 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0283 S13: -0.0818 REMARK 3 S21: -0.0444 S22: -0.0722 S23: -0.0816 REMARK 3 S31: 0.1876 S32: -0.0636 S33: 0.0435 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.12040 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.12040 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PZE AND 1MEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM SULFATE, 20% W/V PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.89000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.89000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.32500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.89000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.32500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.34000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.89000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 386 REMARK 465 LEU A 387 REMARK 465 THR A 388 REMARK 465 THR A 389 REMARK 465 THR A 390 REMARK 465 GLU A 391 REMARK 465 VAL A 392 REMARK 465 VAL A 393 REMARK 465 MET A 394 REMARK 465 GLU A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 PHE A 400 REMARK 465 TRP A 401 REMARK 465 GLU A 402 REMARK 465 GLU A 403 REMARK 465 GLY A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 LEU A 408 REMARK 465 PHE A 409 REMARK 465 GLU A 410 REMARK 465 LYS A 411 REMARK 465 ALA A 412 REMARK 465 LYS A 413 REMARK 465 GLN A 414 REMARK 465 ASN A 415 REMARK 465 ASN A 416 REMARK 465 ASN A 417 REMARK 465 ASN A 418 REMARK 465 ARG A 419 REMARK 465 LYS A 420 REMARK 465 THR A 421 REMARK 465 SER A 422 REMARK 465 ASN A 423 REMARK 465 GLY A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 SER A 427 REMARK 465 LEU A 428 REMARK 465 PHE A 429 REMARK 465 PHE A 430 REMARK 465 SER A 431 REMARK 465 ASN A 432 REMARK 465 PHE A 433 REMARK 465 SER A 434 REMARK 465 LEU A 435 REMARK 465 LEU A 436 REMARK 465 GLY A 437 REMARK 465 THR A 438 REMARK 465 PRO A 439 REMARK 465 VAL A 440 REMARK 465 LEU A 441 REMARK 465 LYS A 442 REMARK 465 ASP A 443 REMARK 465 ILE A 444 REMARK 465 ASN A 445 REMARK 465 PHE A 446 REMARK 465 LYS A 447 REMARK 465 ILE A 448 REMARK 465 SER A 478 REMARK 465 GLU A 479 REMARK 465 GLY A 480 REMARK 465 LYS A 481 REMARK 465 ILE A 482 REMARK 465 LYS A 483 REMARK 465 HIS A 484 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 SER A 641 REMARK 465 SER A 642 REMARK 465 LYS A 643 REMARK 465 LEU A 644 REMARK 465 MET A 645 REMARK 465 GLY A 646 REMARK 465 ALA B 119 REMARK 465 ALA B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 GLY B 127 REMARK 465 ALA B 128 REMARK 465 ALA B 129 REMARK 465 GLU B 130 REMARK 465 GLN B 131 REMARK 465 LYS B 132 REMARK 465 LEU B 133 REMARK 465 ILE B 134 REMARK 465 SER B 135 REMARK 465 GLU B 136 REMARK 465 GLU B 137 REMARK 465 ASP B 138 REMARK 465 LEU B 139 REMARK 465 ASN B 140 REMARK 465 GLY B 141 REMARK 465 ALA B 142 REMARK 465 ALA B 143 REMARK 465 ALA C 121 REMARK 465 ALA C 122 REMARK 465 ALA C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 GLY C 130 REMARK 465 ALA C 131 REMARK 465 ALA C 132 REMARK 465 GLU C 133 REMARK 465 GLN C 134 REMARK 465 LYS C 135 REMARK 465 LEU C 136 REMARK 465 ILE C 137 REMARK 465 SER C 138 REMARK 465 GLU C 139 REMARK 465 GLU C 140 REMARK 465 ASP C 141 REMARK 465 LEU C 142 REMARK 465 ASN C 143 REMARK 465 GLY C 144 REMARK 465 ALA C 145 REMARK 465 ALA C 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 GLU A 474 CD OE1 OE2 REMARK 470 GLU A 476 CG CD OE1 OE2 REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 532 CD CE NZ REMARK 470 LYS A 584 CE NZ REMARK 470 GLU A 585 CD OE1 OE2 REMARK 470 LYS A 606 CE NZ REMARK 470 GLU A 608 CG CD OE1 OE2 REMARK 470 LYS A 615 CE NZ REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 LYS B 43 NZ REMARK 470 LYS B 74 NZ REMARK 470 ARG B 85 NE CZ NH1 NH2 REMARK 470 ASP B 102 CG OD1 OD2 REMARK 470 GLN C 1 CG CD OE1 NE2 REMARK 470 GLN C 3 CD OE1 NE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 LEU C 11 CG CD1 CD2 REMARK 470 SER C 25 OG REMARK 470 SER C 27 OG REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 SER C 53 OG REMARK 470 ASP C 72 CG OD1 OD2 REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 SER C 84 OG REMARK 470 LYS C 86 NZ REMARK 470 GLN C 112 CG CD OE1 NE2 REMARK 470 VAL C 116 CG1 CG2 REMARK 470 SER C 119 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 536 -126.93 62.61 REMARK 500 SER A 573 60.86 38.50 REMARK 500 CYS A 590 -65.11 -96.21 REMARK 500 SER A 605 22.57 -153.70 REMARK 500 ALA B 90 -179.00 -170.95 REMARK 500 ARG B 101 -26.30 78.92 REMARK 500 ALA C 14 132.75 -37.23 REMARK 500 CYS C 22 105.44 -160.04 REMARK 500 ILE C 28 155.22 -47.54 REMARK 500 ASP C 32 -67.14 -107.60 REMARK 500 ASP C 61 -38.95 -36.94 REMARK 500 SER C 84 53.03 39.75 REMARK 500 THR C 90 120.27 -39.50 REMARK 500 ALA C 91 -170.18 -179.82 REMARK 500 TRP C 103 -39.39 -39.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 702 DBREF 6GJU A 387 646 UNP Q20BJ8 Q20BJ8_HUMAN 387 646 DBREF 6GJU B 1 143 PDB 6GJU 6GJU 1 143 DBREF 6GJU C 1 146 PDB 6GJU 6GJU 1 146 SEQADV 6GJU SER A 386 UNP Q20BJ8 EXPRESSION TAG SEQADV 6GJU PRO A 492 UNP Q20BJ8 SER 492 ENGINEERED MUTATION SEQADV 6GJU PRO A 534 UNP Q20BJ8 ALA 534 ENGINEERED MUTATION SEQADV 6GJU THR A 539 UNP Q20BJ8 ILE 539 ENGINEERED MUTATION SEQRES 1 A 261 SER LEU THR THR THR GLU VAL VAL MET GLU ASN VAL THR SEQRES 2 A 261 ALA PHE TRP GLU GLU GLY PHE GLY GLU LEU PHE GLU LYS SEQRES 3 A 261 ALA LYS GLN ASN ASN ASN ASN ARG LYS THR SER ASN GLY SEQRES 4 A 261 ASP ASP SER LEU PHE PHE SER ASN PHE SER LEU LEU GLY SEQRES 5 A 261 THR PRO VAL LEU LYS ASP ILE ASN PHE LYS ILE GLU ARG SEQRES 6 A 261 GLY GLN LEU LEU ALA VAL ALA GLY SER THR GLY ALA GLY SEQRES 7 A 261 LYS THR SER LEU LEU MET MET ILE MET GLY GLU LEU GLU SEQRES 8 A 261 PRO SER GLU GLY LYS ILE LYS HIS SER GLY ARG ILE SER SEQRES 9 A 261 PHE CYS PRO GLN PHE SER TRP ILE MET PRO GLY THR ILE SEQRES 10 A 261 LYS GLU ASN ILE ILE PHE GLY VAL SER TYR ASP GLU TYR SEQRES 11 A 261 ARG TYR ARG SER VAL ILE LYS ALA CYS GLN LEU GLU GLU SEQRES 12 A 261 ASP ILE SER LYS PHE PRO GLU LYS ASP ASN THR VAL LEU SEQRES 13 A 261 GLY GLU GLY GLY ILE THR LEU SER GLY GLY GLN ARG ALA SEQRES 14 A 261 ARG ILE SER LEU ALA ARG ALA VAL TYR LYS ASP ALA ASP SEQRES 15 A 261 LEU TYR LEU LEU ASP SER PRO PHE GLY TYR LEU ASP VAL SEQRES 16 A 261 LEU THR GLU LYS GLU ILE PHE GLU SER CYS VAL CYS LYS SEQRES 17 A 261 LEU MET ALA ASN LYS THR ARG ILE LEU VAL THR SER LYS SEQRES 18 A 261 MET GLU HIS LEU LYS LYS ALA ASP LYS ILE LEU ILE LEU SEQRES 19 A 261 HIS GLU GLY SER SER TYR PHE TYR GLY THR PHE SER GLU SEQRES 20 A 261 LEU GLN ASN LEU GLN PRO ASP PHE SER SER LYS LEU MET SEQRES 21 A 261 GLY SEQRES 1 B 143 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 143 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 143 SER THR PHE ALA ILE ILE ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 143 ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA VAL ILE SER SEQRES 5 B 143 THR GLY ASP THR ARG TYR ALA ASP SER VAL LYS GLY ARG SEQRES 6 B 143 PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL TYR SEQRES 7 B 143 LEU GLN MET ASP SER LEU ARG PRO GLU ASP THR ALA VAL SEQRES 8 B 143 TYR TYR CYS ASN ALA ALA VAL GLN VAL ARG ASP TYR ARG SEQRES 9 B 143 ASN TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 10 B 143 ALA ALA ALA HIS HIS HIS HIS HIS HIS GLY ALA ALA GLU SEQRES 11 B 143 GLN LYS LEU ILE SER GLU GLU ASP LEU ASN GLY ALA ALA SEQRES 1 C 146 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 146 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 146 SER ILE PHE ARG ILE ASP ALA MET GLY TRP TYR ARG GLN SEQRES 4 C 146 ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA HIS SER THR SEQRES 5 C 146 SER GLY GLY SER THR ASP TYR ALA ASP SER VAL LYS GLY SEQRES 6 C 146 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 C 146 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 C 146 VAL TYR TYR CYS ASN ALA ASP VAL ARG THR ARG TRP TYR SEQRES 9 C 146 ALA SER ASN ASN TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 C 146 VAL SER SER ALA ALA ALA HIS HIS HIS HIS HIS HIS GLY SEQRES 11 C 146 ALA ALA GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SEQRES 12 C 146 GLY ALA ALA HET GOL A 701 6 HET PEG A 702 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *83(H2 O) HELIX 1 AA1 ALA A 462 THR A 465 5 4 HELIX 2 AA2 SER A 466 LEU A 475 1 10 HELIX 3 AA3 LYS A 503 PHE A 508 1 6 HELIX 4 AA4 ASP A 513 CYS A 524 1 12 HELIX 5 AA5 LEU A 526 PHE A 533 1 8 HELIX 6 AA6 GLU A 535 ASN A 538 5 4 HELIX 7 AA7 SER A 549 LYS A 564 1 16 HELIX 8 AA8 ASP A 579 VAL A 591 1 13 HELIX 9 AA9 LYS A 606 ALA A 613 1 8 HELIX 10 AB1 THR A 629 ASN A 635 1 7 HELIX 11 AB2 ARG B 85 THR B 89 5 5 HELIX 12 AB3 LYS C 86 THR C 90 5 5 SHEET 1 AA1 6 ILE A 488 CYS A 491 0 SHEET 2 AA1 6 LEU A 568 ASP A 572 1 O LEU A 570 N CYS A 491 SHEET 3 AA1 6 ARG A 600 VAL A 603 1 O ILE A 601 N TYR A 569 SHEET 4 AA1 6 LEU A 453 GLY A 458 1 N LEU A 454 O ARG A 600 SHEET 5 AA1 6 LYS A 615 LEU A 619 1 O LEU A 617 N ALA A 457 SHEET 6 AA1 6 TYR A 625 GLY A 628 -1 O GLY A 628 N ILE A 616 SHEET 1 AA2 2 GLY A 500 THR A 501 0 SHEET 2 AA2 2 VAL A 540 LEU A 541 -1 O LEU A 541 N GLY A 500 SHEET 1 AA3 4 VAL B 2 SER B 7 0 SHEET 2 AA3 4 LEU B 18 GLY B 26 -1 O SER B 21 N SER B 7 SHEET 3 AA3 4 THR B 76 MET B 81 -1 O MET B 81 N LEU B 18 SHEET 4 AA3 4 PHE B 66 ASP B 71 -1 N THR B 67 O GLN B 80 SHEET 1 AA4 6 GLY B 10 GLN B 13 0 SHEET 2 AA4 6 THR B 111 SER B 116 1 O THR B 114 N GLY B 10 SHEET 3 AA4 6 ALA B 90 GLN B 99 -1 N TYR B 92 O THR B 111 SHEET 4 AA4 6 ILE B 31 GLN B 39 -1 N TYR B 37 O TYR B 93 SHEET 5 AA4 6 ARG B 45 SER B 52 -1 O VAL B 48 N TRP B 36 SHEET 6 AA4 6 ASP B 55 TYR B 58 -1 O ARG B 57 N VAL B 50 SHEET 1 AA5 4 GLY B 10 GLN B 13 0 SHEET 2 AA5 4 THR B 111 SER B 116 1 O THR B 114 N GLY B 10 SHEET 3 AA5 4 ALA B 90 GLN B 99 -1 N TYR B 92 O THR B 111 SHEET 4 AA5 4 TYR B 103 TRP B 107 -1 O ARG B 104 N VAL B 98 SHEET 1 AA6 4 GLN C 3 SER C 7 0 SHEET 2 AA6 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AA6 4 THR C 77 MET C 82 -1 O LEU C 80 N LEU C 20 SHEET 4 AA6 4 PHE C 67 ASP C 72 -1 N ASP C 72 O THR C 77 SHEET 1 AA7 6 GLY C 10 GLN C 13 0 SHEET 2 AA7 6 THR C 114 SER C 119 1 O GLN C 115 N GLY C 10 SHEET 3 AA7 6 ALA C 91 ARG C 102 -1 N ALA C 91 O VAL C 116 SHEET 4 AA7 6 ARG C 30 GLN C 39 -1 N TYR C 37 O TYR C 94 SHEET 5 AA7 6 GLU C 46 SER C 51 -1 O SER C 51 N MET C 34 SHEET 6 AA7 6 THR C 57 TYR C 59 -1 O ASP C 58 N HIS C 50 SHEET 1 AA8 4 GLY C 10 GLN C 13 0 SHEET 2 AA8 4 THR C 114 SER C 119 1 O GLN C 115 N GLY C 10 SHEET 3 AA8 4 ALA C 91 ARG C 102 -1 N ALA C 91 O VAL C 116 SHEET 4 AA8 4 ALA C 105 TRP C 110 -1 O ASN C 107 N VAL C 99 SSBOND 1 CYS B 22 CYS B 94 1555 1555 2.02 SSBOND 2 CYS C 22 CYS C 95 1555 1555 2.03 SITE 1 AC1 5 ARG A 516 VAL A 562 TYR A 569 MET A 595 SITE 2 AC1 5 LYS A 598 SITE 1 AC2 8 TRP A 496 MET A 498 PRO A 499 GLU A 504 SITE 2 AC2 8 ASN A 505 PHE A 508 ARG A 560 LEU B 47 CRYST1 38.680 135.780 190.650 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005245 0.00000