HEADER OXIDOREDUCTASE 18-MAY-18 6GK5 TITLE CRYSTAL STRUCTURE OF CYTOCHROME P450 CYP267B1 FROM SORANGIUM TITLE 2 CELLULOSUM SO CE56 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 CYP267B1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORANGIUM CELLULOSUM; SOURCE 3 ORGANISM_TAXID: 448385; SOURCE 4 STRAIN: SO CE56; SOURCE 5 GENE: CYPA6, SCE7167; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BACTERIAL PROTEINS, SORANGIUM CELLULOSUM, CYTOCHROME P-450 ENZYME KEYWDS 2 SYSTEM, CYTOCHROME P450, HYDROXYLATION, HEME, OXIDATION-REDUCTION, KEYWDS 3 FLAVANONE, MYRISTIC ACID, TETRADECANOIC ACID, BIOCATALYSIS, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.K.JOZWIK,A.M.W.H.THUNNISSEN REVDAT 3 17-JAN-24 6GK5 1 REMARK REVDAT 2 19-SEP-18 6GK5 1 JRNL REVDAT 1 08-AUG-18 6GK5 0 JRNL AUTH I.K.JOZWIK,M.LITZENBURGER,Y.KHATRI,A.SCHIFRIN,M.GIRHARD, JRNL AUTH 2 V.URLACHER,A.W.H.THUNNISSEN,R.BERNHARDT JRNL TITL STRUCTURAL INSIGHTS INTO OXIDATION OF MEDIUM-CHAIN FATTY JRNL TITL 2 ACIDS AND FLAVANONE BY MYXOBACTERIAL CYTOCHROME P450 JRNL TITL 3 CYP267B1. JRNL REF BIOCHEM. J. V. 475 2801 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 30045877 JRNL DOI 10.1042/BCJ20180402 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 45694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0250 - 4.9130 0.84 2486 162 0.1696 0.1742 REMARK 3 2 4.9130 - 3.9006 0.89 2684 118 0.1364 0.1271 REMARK 3 3 3.9006 - 3.4078 0.90 2668 154 0.1596 0.1923 REMARK 3 4 3.4078 - 3.0963 0.89 2670 152 0.1789 0.1982 REMARK 3 5 3.0963 - 2.8745 0.83 2463 137 0.1971 0.2301 REMARK 3 6 2.8745 - 2.7050 0.87 2585 124 0.1969 0.1990 REMARK 3 7 2.7050 - 2.5696 0.89 2659 154 0.1903 0.2154 REMARK 3 8 2.5696 - 2.4577 0.91 2683 157 0.1942 0.2273 REMARK 3 9 2.4577 - 2.3631 0.91 2730 140 0.1832 0.2053 REMARK 3 10 2.3631 - 2.2816 0.91 2747 142 0.1755 0.1870 REMARK 3 11 2.2816 - 2.2103 0.93 2738 160 0.1789 0.2220 REMARK 3 12 2.2103 - 2.1471 0.93 2739 162 0.1817 0.2055 REMARK 3 13 2.1471 - 2.0906 0.88 2657 135 0.1947 0.1864 REMARK 3 14 2.0906 - 2.0396 0.85 2549 131 0.1976 0.2280 REMARK 3 15 2.0396 - 1.9932 0.89 2673 141 0.1953 0.2280 REMARK 3 16 1.9932 - 1.9508 0.91 2693 142 0.2128 0.2595 REMARK 3 17 1.9508 - 1.9118 0.93 2800 113 0.2152 0.2680 REMARK 3 18 1.9118 - 1.8757 0.91 2709 154 0.2217 0.2417 REMARK 3 19 1.8757 - 1.8422 0.93 2791 142 0.2293 0.2402 REMARK 3 20 1.8422 - 1.8109 0.92 2797 113 0.2280 0.3154 REMARK 3 21 1.8109 - 1.7817 0.93 2720 157 0.2427 0.2919 REMARK 3 22 1.7817 - 1.7543 0.92 2770 155 0.2283 0.2983 REMARK 3 23 1.7543 - 1.7285 0.93 2775 136 0.2400 0.2725 REMARK 3 24 1.7285 - 1.7042 0.92 2716 139 0.2567 0.3049 REMARK 3 25 1.7042 - 1.6811 0.90 2735 128 0.2648 0.3099 REMARK 3 26 1.6811 - 1.6593 0.86 2514 173 0.2759 0.3051 REMARK 3 27 1.6593 - 1.6386 0.84 2595 117 0.2808 0.3307 REMARK 3 28 1.6386 - 1.6188 0.88 2591 133 0.2727 0.3176 REMARK 3 29 1.6188 - 1.6000 0.89 2700 154 0.2884 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 3379 REMARK 3 ANGLE : 1.524 4604 REMARK 3 CHIRALITY : 0.076 495 REMARK 3 PLANARITY : 0.009 608 REMARK 3 DIHEDRAL : 13.834 1275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UMZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% (V/V) TACSIMATE REAGENT (PH 7.0), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.75050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.15200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.15200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.75050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 ASP A 5 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 639 O HOH A 799 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 16 CZ ARG A 16 NH2 0.085 REMARK 500 ARG A 64 CZ ARG A 64 NH2 0.093 REMARK 500 MET A 114 N MET A 114 CA -0.128 REMARK 500 ARG A 200 CZ ARG A 200 NH1 0.079 REMARK 500 ARG A 200 CZ ARG A 200 NH2 0.089 REMARK 500 VAL A 249 N VAL A 249 CA 0.139 REMARK 500 VAL A 249 CA VAL A 249 C 0.167 REMARK 500 ARG A 267 CZ ARG A 267 NH1 0.091 REMARK 500 ARG A 267 CZ ARG A 267 NH2 0.081 REMARK 500 ARG A 268 CZ ARG A 268 NH1 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 18 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 MET A 114 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 VAL A 249 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 50.08 39.08 REMARK 500 PHE A 145 -59.49 -155.12 REMARK 500 HIS A 245 -39.24 -136.22 REMARK 500 THR A 247 -70.01 -32.34 REMARK 500 GLU A 287 29.99 -143.50 REMARK 500 ARG A 343 43.57 -99.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 114 -12.35 REMARK 500 MET A 114 -12.13 REMARK 500 VAL A 249 -19.13 REMARK 500 VAL A 249 -19.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 354 SG REMARK 620 2 HEM A 501 NA 98.9 REMARK 620 3 HEM A 501 NB 88.4 89.2 REMARK 620 4 HEM A 501 NC 88.9 172.3 91.2 REMARK 620 5 HEM A 501 ND 98.8 89.3 172.8 89.2 REMARK 620 6 HOH A 716 O 164.3 92.9 81.5 79.5 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 DBREF 6GK5 A 1 405 UNP A9ERX9 A9ERX9_SORC5 1 405 SEQADV 6GK5 HIS A 406 UNP A9ERX9 EXPRESSION TAG SEQADV 6GK5 HIS A 407 UNP A9ERX9 EXPRESSION TAG SEQADV 6GK5 HIS A 408 UNP A9ERX9 EXPRESSION TAG SEQADV 6GK5 HIS A 409 UNP A9ERX9 EXPRESSION TAG SEQADV 6GK5 HIS A 410 UNP A9ERX9 EXPRESSION TAG SEQADV 6GK5 HIS A 411 UNP A9ERX9 EXPRESSION TAG SEQRES 1 A 411 MET VAL ASP GLN ASP ALA PHE PRO GLU LEU PHE HIS PRO SEQRES 2 A 411 SER SER ARG ALA GLU PRO HIS ALA ILE TYR ALA ARG MET SEQRES 3 A 411 ARG ALA ALA GLY ARG LEU HIS ARG LEU VAL HIS PRO ARG SEQRES 4 A 411 LEU ASP VAL PRO ILE TRP VAL ALA VAL ARG TYR ASP ASP SEQRES 5 A 411 CYS VAL GLU LEU LEU LYS ASP PRO ARG LEU ILE ARG ASP SEQRES 6 A 411 PHE ARG LYS LEU PRO ASP GLU VAL ARG ARG ARG TYR PHE SEQRES 7 A 411 PRO LEU SER ASP ARG THR THR PHE MET ASP GLN HIS MET SEQRES 8 A 411 LEU ASP ALA ASP PRO PRO ASP HIS THR ARG LEU ARG ALA SEQRES 9 A 411 ILE VAL GLN ARG ALA PHE SER PRO ARG MET MET GLU GLY SEQRES 10 A 411 LEU ARG PRO ARG ILE GLN GLU ILE ALA ASP GLY LEU ILE SEQRES 11 A 411 ASP ALA VAL ILE ASP ARG ARG ARG MET GLU LEU ILE ALA SEQRES 12 A 411 ASP PHE ALA PHE PRO LEU PRO THR ALA VAL ILE ALA GLU SEQRES 13 A 411 LEU LEU GLY LEU PRO VAL GLU ASP ARG GLY ARG PHE ARG SEQRES 14 A 411 ARG TRP THR LYS ILE LEU LEU ALA PRO ALA LYS ASP ARG SEQRES 15 A 411 GLU PHE VAL GLU ARG ALA GLN PRO VAL VAL GLU GLU PHE SEQRES 16 A 411 ALA ALA TYR PHE ARG ALA LEU ALA ASP ALA ARG ARG LYS SEQRES 17 A 411 ALA PRO ARG ASP ASP LEU ILE SER GLY LEU LEU LEU ALA SEQRES 18 A 411 GLU GLU GLN GLU HIS LYS LEU SER PRO ALA GLU LEU SER SEQRES 19 A 411 SER MET VAL PHE LEU LEU LEU VAL ALA GLY HIS GLU THR SEQRES 20 A 411 THR VAL HIS LEU ILE ALA SER GLY MET LEU LEU LEU LEU SEQRES 21 A 411 SER HIS PRO ALA GLU ARG ARG ARG LEU ASP GLU ASP PRO SEQRES 22 A 411 GLY LEU VAL GLY SER ALA VAL GLU GLU ALA LEU ARG CYS SEQRES 23 A 411 GLU GLY PRO ALA GLU LEU SER THR ILE ARG TRP SER LEU SEQRES 24 A 411 GLU ASP ILE GLU LEU PHE GLY ALA ARG VAL PRO ALA GLY SEQRES 25 A 411 GLU GLY VAL ALA ALA GLY LEU LEU ALA ALA ASN ARG ASP SEQRES 26 A 411 PRO GLN HIS PHE PRO ASP PRO ASP ARG PHE ASP ILE GLY SEQRES 27 A 411 ARG SER PRO ASN ARG HIS ILE GLY PHE GLY GLY GLY ILE SEQRES 28 A 411 HIS PHE CYS LEU GLY ALA MET LEU ALA ARG ILE GLU ALA SEQRES 29 A 411 ALA ILE ALA PHE SER THR LEU LEU ARG ARG LEU PRO ARG SEQRES 30 A 411 ILE GLU LEU ALA THR SER THR ARG ASP ILE VAL TRP SER SEQRES 31 A 411 GLU TRP PRO THR ILE ARG GLY PRO ALA ALA VAL PRO VAL SEQRES 32 A 411 VAL PHE HIS HIS HIS HIS HIS HIS HET HEM A 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *226(H2 O) HELIX 1 AA1 PHE A 7 PHE A 11 5 5 HELIX 2 AA2 HIS A 12 GLU A 18 1 7 HELIX 3 AA3 PRO A 19 GLY A 30 1 12 HELIX 4 AA4 ARG A 49 ASP A 59 1 11 HELIX 5 AA5 ASP A 65 LEU A 69 5 5 HELIX 6 AA6 PRO A 70 PHE A 78 1 9 HELIX 7 AA7 THR A 84 GLN A 89 1 6 HELIX 8 AA8 HIS A 90 ALA A 94 5 5 HELIX 9 AA9 PRO A 97 GLN A 107 1 11 HELIX 10 AB1 ARG A 108 PHE A 110 5 3 HELIX 11 AB2 SER A 111 ILE A 134 1 24 HELIX 12 AB3 LEU A 141 PHE A 145 1 5 HELIX 13 AB4 PHE A 147 GLY A 159 1 13 HELIX 14 AB5 PRO A 161 GLU A 163 5 3 HELIX 15 AB6 ASP A 164 LEU A 176 1 13 HELIX 16 AB7 ASP A 181 ALA A 209 1 29 HELIX 17 AB8 ASP A 213 GLN A 224 1 12 HELIX 18 AB9 SER A 229 GLY A 244 1 16 HELIX 19 AC1 HIS A 245 LEU A 260 1 16 HELIX 20 AC2 HIS A 262 ASP A 272 1 11 HELIX 21 AC3 LEU A 275 GLY A 288 1 14 HELIX 22 AC4 GLY A 318 ASN A 323 1 6 HELIX 23 AC5 GLY A 349 PHE A 353 5 5 HELIX 24 AC6 GLY A 356 LEU A 375 1 20 HELIX 25 AC7 SER A 383 ILE A 387 5 5 SHEET 1 AA1 3 LEU A 32 VAL A 36 0 SHEET 2 AA1 3 PRO A 43 ALA A 47 -1 O VAL A 46 N HIS A 33 SHEET 3 AA1 3 GLY A 314 ALA A 317 1 O GLY A 314 N TRP A 45 SHEET 1 AA2 3 ARG A 138 GLU A 140 0 SHEET 2 AA2 3 PRO A 402 VAL A 404 -1 O VAL A 403 N MET A 139 SHEET 3 AA2 3 GLU A 379 LEU A 380 -1 N GLU A 379 O VAL A 404 SHEET 1 AA3 2 ILE A 302 LEU A 304 0 SHEET 2 AA3 2 ALA A 307 VAL A 309 -1 O VAL A 309 N ILE A 302 LINK SG CYS A 354 FE HEM A 501 1555 1555 2.36 LINK FE HEM A 501 O HOH A 716 1555 1555 2.39 CISPEP 1 PRO A 96 PRO A 97 0 7.01 CISPEP 2 SER A 340 PRO A 341 0 1.63 CISPEP 3 TRP A 392 PRO A 393 0 -2.37 SITE 1 AC1 22 MET A 91 LEU A 92 HIS A 99 ARG A 103 SITE 2 AC1 22 ALA A 243 GLY A 244 THR A 247 THR A 248 SITE 3 AC1 22 LEU A 251 SER A 293 THR A 294 ARG A 296 SITE 4 AC1 22 GLY A 346 PHE A 347 GLY A 348 ILE A 351 SITE 5 AC1 22 HIS A 352 CYS A 354 GLY A 356 ALA A 360 SITE 6 AC1 22 HOH A 634 HOH A 716 CRYST1 51.501 66.390 104.304 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009587 0.00000