HEADER TRANSFERASE 22-MAY-18 6GKV TITLE CRYSTAL STRUCTURE OF COCLAURINE N-METHYLTRANSFERASE (CNMT) BOUND TO N- TITLE 2 METHYLHELIAMINE AND SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: COCLAURINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPTIS JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE GOLDTHREAD; SOURCE 4 ORGANISM_TAXID: 3442; SOURCE 5 GENE: CNMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-METHYLHELIAMINE, COCLAURINE N-METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.DUNSTAN,C.W.LEVY REVDAT 3 15-MAY-24 6GKV 1 REMARK REVDAT 2 29-AUG-18 6GKV 1 JRNL REVDAT 1 06-JUN-18 6GKV 0 JRNL AUTH M.R.BENNETT,M.L.THOMPSON,S.A.SHEPHERD,M.S.DUNSTAN, JRNL AUTH 2 A.J.HERBERT,D.R.M.SMITH,V.A.CRONIN,B.R.K.MENON,C.LEVY, JRNL AUTH 3 J.MICKLEFIELD JRNL TITL STRUCTURE AND BIOCATALYTIC SCOPE OF COCLAURINE JRNL TITL 2 N-METHYLTRANSFERASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 10600 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29791083 JRNL DOI 10.1002/ANIE.201805060 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2600 - 5.2242 0.99 2842 154 0.1643 0.1940 REMARK 3 2 5.2242 - 4.1474 1.00 2708 142 0.1375 0.2166 REMARK 3 3 4.1474 - 3.6234 1.00 2693 157 0.1711 0.2667 REMARK 3 4 3.6234 - 3.2922 1.00 2671 131 0.1966 0.2710 REMARK 3 5 3.2922 - 3.0563 1.00 2636 143 0.2277 0.3022 REMARK 3 6 3.0563 - 2.8761 1.00 2649 139 0.2328 0.3538 REMARK 3 7 2.8761 - 2.7321 1.00 2642 124 0.2465 0.3219 REMARK 3 8 2.7321 - 2.6132 1.00 2629 133 0.2580 0.3757 REMARK 3 9 2.6132 - 2.5126 1.00 2638 132 0.2726 0.3330 REMARK 3 10 2.5126 - 2.4259 1.00 2611 130 0.2877 0.3593 REMARK 3 11 2.4259 - 2.3500 1.00 2617 140 0.3223 0.3853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5919 REMARK 3 ANGLE : 1.306 8006 REMARK 3 CHIRALITY : 0.047 874 REMARK 3 PLANARITY : 0.005 1011 REMARK 3 DIHEDRAL : 16.234 2200 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9609 10.6129 -18.4251 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.3965 REMARK 3 T33: 0.3467 T12: -0.0529 REMARK 3 T13: 0.0434 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.0355 L22: 1.4683 REMARK 3 L33: 2.0852 L12: 0.0469 REMARK 3 L13: 1.0971 L23: -0.1321 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.2503 S13: -0.1126 REMARK 3 S21: 0.3586 S22: 0.1824 S23: 0.1769 REMARK 3 S31: 0.1363 S32: -0.4789 S33: -0.1296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5358 22.3516 -19.2582 REMARK 3 T TENSOR REMARK 3 T11: 0.2974 T22: 0.5621 REMARK 3 T33: 0.5346 T12: -0.0409 REMARK 3 T13: -0.0331 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.2910 L22: 1.4179 REMARK 3 L33: 1.8184 L12: -0.5303 REMARK 3 L13: 1.4863 L23: -1.0243 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: -0.2199 S13: 0.2104 REMARK 3 S21: 0.1421 S22: 0.0382 S23: -0.3780 REMARK 3 S31: -0.0915 S32: 0.3290 S33: 0.0711 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3592 35.9748 -22.0354 REMARK 3 T TENSOR REMARK 3 T11: 0.5114 T22: 0.3802 REMARK 3 T33: 0.6077 T12: -0.0738 REMARK 3 T13: -0.1180 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.9361 L22: 1.5645 REMARK 3 L33: 2.1384 L12: -0.3330 REMARK 3 L13: 0.8079 L23: 0.1592 REMARK 3 S TENSOR REMARK 3 S11: -0.2806 S12: -0.1383 S13: 0.5568 REMARK 3 S21: 0.1462 S22: 0.0664 S23: -0.4929 REMARK 3 S31: -0.6043 S32: 0.3496 S33: 0.1496 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9315 18.1456 -19.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.2862 REMARK 3 T33: 0.2862 T12: -0.0066 REMARK 3 T13: 0.0043 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.0244 L22: 2.1737 REMARK 3 L33: 2.5105 L12: -0.4067 REMARK 3 L13: 0.3636 L23: -0.2458 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.1493 S13: 0.0931 REMARK 3 S21: -0.0601 S22: -0.0038 S23: -0.1513 REMARK 3 S31: 0.1890 S32: 0.1022 S33: 0.0176 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0717 15.6620 -56.8044 REMARK 3 T TENSOR REMARK 3 T11: 0.5687 T22: 0.3943 REMARK 3 T33: 0.3962 T12: 0.0766 REMARK 3 T13: -0.0591 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.4765 L22: 0.8269 REMARK 3 L33: 1.8645 L12: -0.6149 REMARK 3 L13: 0.3165 L23: 0.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.2255 S13: -0.0752 REMARK 3 S21: -0.5322 S22: -0.0875 S23: 0.1668 REMARK 3 S31: -0.0468 S32: -0.1281 S33: 0.0006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6202 37.5817 -58.0616 REMARK 3 T TENSOR REMARK 3 T11: 0.7979 T22: 0.5061 REMARK 3 T33: 0.4242 T12: 0.2544 REMARK 3 T13: -0.1093 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 1.9453 L22: 1.7396 REMARK 3 L33: 2.4880 L12: -0.8539 REMARK 3 L13: 0.0784 L23: -0.4684 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: 0.1960 S13: 0.1256 REMARK 3 S21: -0.4985 S22: -0.1066 S23: 0.2060 REMARK 3 S31: -0.5759 S32: -0.2962 S33: 0.1608 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 199 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9150 19.8610 -55.8675 REMARK 3 T TENSOR REMARK 3 T11: 0.5645 T22: 0.3203 REMARK 3 T33: 0.2924 T12: 0.0866 REMARK 3 T13: -0.0602 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.4410 L22: 1.3330 REMARK 3 L33: 2.1253 L12: -0.4654 REMARK 3 L13: 0.3201 L23: 0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: 0.2207 S13: -0.0889 REMARK 3 S21: -0.5338 S22: -0.1536 S23: 0.1272 REMARK 3 S31: -0.0524 S32: -0.0169 S33: 0.0279 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 46.251 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ETHYLENE GLYCOL 0.1 M REMARK 280 HEPES/MOPS (PH 7.4) 37.5 % MPD_PEG 1K/PEG 3350 AND 1 MM ADOHCY, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 127 CG1 CG2 CD1 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 17 CG CD1 CD2 REMARK 470 ILE B 90 CG1 CG2 CD1 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 344 O HOH A 601 2.10 REMARK 500 OH TYR A 243 O HOH A 602 2.13 REMARK 500 OD1 ASN A 161 O HOH A 603 2.14 REMARK 500 OE1 GLU B 346 O HOH B 501 2.15 REMARK 500 O LYS B 104 OG1 THR B 108 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 179 NH2 ARG B 36 3654 2.07 REMARK 500 NE2 GLN A 66 O GLN A 149 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 285 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 TYR B 243 CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR B 243 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 LEU B 285 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 81 -0.25 68.41 REMARK 500 GLU A 82 50.99 -115.08 REMARK 500 GLN A 149 -70.04 -62.91 REMARK 500 LYS A 150 44.97 -107.14 REMARK 500 GLU A 204 60.03 62.44 REMARK 500 LYS A 210 -77.92 -129.18 REMARK 500 THR A 238 -52.74 -120.32 REMARK 500 LEU A 301 -72.76 -58.11 REMARK 500 GLU A 347 -75.59 -120.34 REMARK 500 MET A 349 -168.66 -163.48 REMARK 500 GLU B 72 78.81 56.03 REMARK 500 TYR B 81 -31.30 71.45 REMARK 500 GLU B 105 174.67 81.98 REMARK 500 LYS B 210 -69.98 -130.82 REMARK 500 THR B 238 -48.47 -132.80 REMARK 500 TYR B 243 88.60 -68.39 REMARK 500 ASP B 247 -161.23 -165.47 REMARK 500 ASN B 318 150.66 171.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 150 TYR A 151 146.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F2W A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F2W B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 402 DBREF 6GKV A 7 357 UNP Q948P7 Q948P7_COPJA 7 357 DBREF 6GKV B 7 357 UNP Q948P7 Q948P7_COPJA 7 357 SEQRES 1 A 351 GLN THR LYS LYS ALA ALA ILE VAL GLU LEU LEU LYS GLN SEQRES 2 A 351 LEU GLU LEU GLY LEU VAL PRO TYR ASP ASP ILE LYS GLN SEQRES 3 A 351 LEU ILE ARG ARG GLU LEU ALA ARG ARG LEU GLN TRP GLY SEQRES 4 A 351 TYR LYS PRO THR TYR GLU GLU GLN ILE ALA GLU ILE GLN SEQRES 5 A 351 ASN LEU THR HIS SER LEU ARG GLN MET LYS ILE ALA THR SEQRES 6 A 351 GLU VAL GLU THR LEU ASP SER GLN LEU TYR GLU ILE PRO SEQRES 7 A 351 ILE GLU PHE LEU LYS ILE MET ASN GLY SER ASN LEU LYS SEQRES 8 A 351 GLY SER CYS CYS TYR PHE LYS GLU ASP SER THR THR LEU SEQRES 9 A 351 ASP GLU ALA GLU ILE ALA MET LEU ASP LEU TYR CYS GLU SEQRES 10 A 351 ARG ALA GLN ILE GLN ASP GLY GLN SER VAL LEU ASP LEU SEQRES 11 A 351 GLY CYS GLY GLN GLY ALA LEU THR LEU HIS VAL ALA GLN SEQRES 12 A 351 LYS TYR LYS ASN CYS ARG VAL THR ALA VAL THR ASN SER SEQRES 13 A 351 VAL SER GLN LYS GLU TYR ILE GLU GLU GLU SER ARG ARG SEQRES 14 A 351 ARG ASN LEU LEU ASN VAL GLU VAL LYS LEU ALA ASP ILE SEQRES 15 A 351 THR THR HIS GLU MET ALA GLU THR TYR ASP ARG ILE LEU SEQRES 16 A 351 VAL ILE GLU LEU PHE GLU HIS MET LYS ASN TYR GLU LEU SEQRES 17 A 351 LEU LEU ARG LYS ILE SER GLU TRP ILE SER LYS ASP GLY SEQRES 18 A 351 LEU LEU PHE LEU GLU HIS ILE CYS HIS LYS THR PHE ALA SEQRES 19 A 351 TYR HIS TYR GLU PRO LEU ASP ASP ASP ASP TRP PHE THR SEQRES 20 A 351 GLU TYR VAL PHE PRO ALA GLY THR MET ILE ILE PRO SER SEQRES 21 A 351 ALA SER PHE PHE LEU TYR PHE GLN ASP ASP VAL SER VAL SEQRES 22 A 351 VAL ASN HIS TRP THR LEU SER GLY LYS HIS PHE SER ARG SEQRES 23 A 351 THR ASN GLU GLU TRP LEU LYS ARG LEU ASP ALA ASN LEU SEQRES 24 A 351 ASP VAL ILE LYS PRO MET PHE GLU THR LEU MET GLY ASN SEQRES 25 A 351 GLU GLU GLU ALA VAL LYS LEU ILE ASN TYR TRP ARG GLY SEQRES 26 A 351 PHE CYS LEU SER GLY MET GLU MET PHE GLY TYR ASN ASN SEQRES 27 A 351 GLY GLU GLU TRP MET ALA SER HIS VAL LEU PHE LYS LYS SEQRES 1 B 351 GLN THR LYS LYS ALA ALA ILE VAL GLU LEU LEU LYS GLN SEQRES 2 B 351 LEU GLU LEU GLY LEU VAL PRO TYR ASP ASP ILE LYS GLN SEQRES 3 B 351 LEU ILE ARG ARG GLU LEU ALA ARG ARG LEU GLN TRP GLY SEQRES 4 B 351 TYR LYS PRO THR TYR GLU GLU GLN ILE ALA GLU ILE GLN SEQRES 5 B 351 ASN LEU THR HIS SER LEU ARG GLN MET LYS ILE ALA THR SEQRES 6 B 351 GLU VAL GLU THR LEU ASP SER GLN LEU TYR GLU ILE PRO SEQRES 7 B 351 ILE GLU PHE LEU LYS ILE MET ASN GLY SER ASN LEU LYS SEQRES 8 B 351 GLY SER CYS CYS TYR PHE LYS GLU ASP SER THR THR LEU SEQRES 9 B 351 ASP GLU ALA GLU ILE ALA MET LEU ASP LEU TYR CYS GLU SEQRES 10 B 351 ARG ALA GLN ILE GLN ASP GLY GLN SER VAL LEU ASP LEU SEQRES 11 B 351 GLY CYS GLY GLN GLY ALA LEU THR LEU HIS VAL ALA GLN SEQRES 12 B 351 LYS TYR LYS ASN CYS ARG VAL THR ALA VAL THR ASN SER SEQRES 13 B 351 VAL SER GLN LYS GLU TYR ILE GLU GLU GLU SER ARG ARG SEQRES 14 B 351 ARG ASN LEU LEU ASN VAL GLU VAL LYS LEU ALA ASP ILE SEQRES 15 B 351 THR THR HIS GLU MET ALA GLU THR TYR ASP ARG ILE LEU SEQRES 16 B 351 VAL ILE GLU LEU PHE GLU HIS MET LYS ASN TYR GLU LEU SEQRES 17 B 351 LEU LEU ARG LYS ILE SER GLU TRP ILE SER LYS ASP GLY SEQRES 18 B 351 LEU LEU PHE LEU GLU HIS ILE CYS HIS LYS THR PHE ALA SEQRES 19 B 351 TYR HIS TYR GLU PRO LEU ASP ASP ASP ASP TRP PHE THR SEQRES 20 B 351 GLU TYR VAL PHE PRO ALA GLY THR MET ILE ILE PRO SER SEQRES 21 B 351 ALA SER PHE PHE LEU TYR PHE GLN ASP ASP VAL SER VAL SEQRES 22 B 351 VAL ASN HIS TRP THR LEU SER GLY LYS HIS PHE SER ARG SEQRES 23 B 351 THR ASN GLU GLU TRP LEU LYS ARG LEU ASP ALA ASN LEU SEQRES 24 B 351 ASP VAL ILE LYS PRO MET PHE GLU THR LEU MET GLY ASN SEQRES 25 B 351 GLU GLU GLU ALA VAL LYS LEU ILE ASN TYR TRP ARG GLY SEQRES 26 B 351 PHE CYS LEU SER GLY MET GLU MET PHE GLY TYR ASN ASN SEQRES 27 B 351 GLY GLU GLU TRP MET ALA SER HIS VAL LEU PHE LYS LYS HET SAH A 501 26 HET F2W A 502 15 HET F2W B 401 15 HET SAH B 402 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM F2W 6,7-DIMETHOXY-2-METHYL-1,2,3,4-TETRAHYDROISOQUINOLIN-2- HETNAM 2 F2W IUM FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 F2W 2(C12 H18 N O2 1+) FORMUL 7 HOH *81(H2 O) HELIX 1 AA1 GLN A 7 GLY A 23 1 17 HELIX 2 AA2 PRO A 26 TYR A 46 1 21 HELIX 3 AA3 THR A 49 ARG A 65 1 17 HELIX 4 AA4 THR A 75 LEU A 80 1 6 HELIX 5 AA5 PRO A 84 ASN A 92 1 9 HELIX 6 AA6 THR A 109 ALA A 125 1 17 HELIX 7 AA7 GLY A 141 LYS A 150 1 10 HELIX 8 AA8 SER A 162 ARG A 175 1 14 HELIX 9 AA9 LEU A 205 MET A 209 5 5 HELIX 10 AB1 ASN A 211 TRP A 222 1 12 HELIX 11 AB2 SER A 268 PHE A 273 5 6 HELIX 12 AB3 GLY A 287 ASN A 304 1 18 HELIX 13 AB4 ASN A 304 MET A 316 1 13 HELIX 14 AB5 ASN A 318 TYR A 342 1 25 HELIX 15 AB6 ASN A 343 GLU A 346 5 4 HELIX 16 AB7 ILE B 13 LEU B 22 1 10 HELIX 17 AB8 PRO B 26 TYR B 46 1 21 HELIX 18 AB9 THR B 49 ARG B 65 1 17 HELIX 19 AC1 THR B 75 LEU B 80 1 6 HELIX 20 AC2 PRO B 84 ASN B 92 1 9 HELIX 21 AC3 THR B 109 ALA B 125 1 17 HELIX 22 AC4 GLY B 141 TYR B 151 1 11 HELIX 23 AC5 VAL B 163 ASN B 177 1 15 HELIX 24 AC6 LEU B 205 MET B 209 5 5 HELIX 25 AC7 ASN B 211 GLU B 221 1 11 HELIX 26 AC8 PHE B 252 PHE B 257 1 6 HELIX 27 AC9 SER B 268 PHE B 273 5 6 HELIX 28 AD1 GLY B 287 ASN B 304 1 18 HELIX 29 AD2 ASN B 304 MET B 316 1 13 HELIX 30 AD3 GLU B 321 PHE B 340 1 20 HELIX 31 AD4 GLY B 341 GLU B 346 5 6 SHEET 1 AA1 7 GLU A 182 LEU A 185 0 SHEET 2 AA1 7 ARG A 155 THR A 160 1 N ALA A 158 O LYS A 184 SHEET 3 AA1 7 SER A 132 LEU A 136 1 N VAL A 133 O THR A 157 SHEET 4 AA1 7 TYR A 197 ILE A 203 1 O LEU A 201 N LEU A 134 SHEET 5 AA1 7 ILE A 223 HIS A 236 1 O PHE A 230 N ILE A 200 SHEET 6 AA1 7 TRP A 348 LYS A 356 -1 O MET A 349 N CYS A 235 SHEET 7 AA1 7 SER A 278 LEU A 285 -1 N VAL A 280 O LEU A 354 SHEET 1 AA2 2 TYR A 241 HIS A 242 0 SHEET 2 AA2 2 ILE A 263 ILE A 264 -1 O ILE A 264 N TYR A 241 SHEET 1 AA3 7 VAL B 181 LEU B 185 0 SHEET 2 AA3 7 ARG B 155 THR B 160 1 N ALA B 158 O LYS B 184 SHEET 3 AA3 7 SER B 132 LEU B 136 1 N ASP B 135 O THR B 157 SHEET 4 AA3 7 TYR B 197 ILE B 203 1 O LEU B 201 N LEU B 134 SHEET 5 AA3 7 ILE B 223 HIS B 236 1 O PHE B 230 N ILE B 200 SHEET 6 AA3 7 TRP B 348 LYS B 356 -1 O PHE B 355 N LEU B 229 SHEET 7 AA3 7 SER B 278 LEU B 285 -1 N TRP B 283 O HIS B 352 SHEET 1 AA4 2 TYR B 241 HIS B 242 0 SHEET 2 AA4 2 ILE B 263 ILE B 264 -1 O ILE B 264 N TYR B 241 SITE 1 AC1 16 VAL A 73 TYR A 81 GLY A 98 SER A 99 SITE 2 AC1 16 GLY A 137 CYS A 138 GLY A 139 ASN A 161 SITE 3 AC1 16 GLN A 165 ASP A 187 ILE A 188 ILE A 203 SITE 4 AC1 16 GLU A 204 LEU A 205 MET A 209 HOH A 603 SITE 1 AC2 8 GLU A 204 PHE A 257 ILE A 264 ASN A 294 SITE 2 AC2 8 PHE A 332 GLY A 336 MET A 339 PHE A 340 SITE 1 AC3 8 GLU B 204 PHE B 257 MET B 262 PHE B 290 SITE 2 AC3 8 ASN B 294 PHE B 332 GLY B 336 PHE B 340 SITE 1 AC4 17 ASP B 77 TYR B 81 GLY B 98 SER B 99 SITE 2 AC4 17 GLY B 137 CYS B 138 GLY B 139 THR B 160 SITE 3 AC4 17 ASN B 161 GLN B 165 ALA B 186 ASP B 187 SITE 4 AC4 17 ILE B 188 THR B 189 ILE B 203 GLU B 204 SITE 5 AC4 17 HOH B 508 CRYST1 48.470 96.050 154.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020631 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006467 0.00000