HEADER STRUCTURAL PROTEIN 22-MAY-18 6GKX TITLE CRYSTAL STRUCTURE OF THE R-TYPE BACTERIOCIN TUBE PROTEIN CD1364 FROM TITLE 2 CLOSTRIDIUM DIFFICILE IN THE PRE-ASSEMBLED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHAGE XKDM-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE (STRAIN 630); SOURCE 3 ORGANISM_COMMON: CLOSTRIDIUM DIFFICILE; SOURCE 4 ORGANISM_TAXID: 272563; SOURCE 5 STRAIN: 630; SOURCE 6 GENE: CD630_13640; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIFFOCIN TUBE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHWEMMLEIN,J.PIPPEL,E.M.GAZDAG,W.BLANKENFELDT REVDAT 3 17-JAN-24 6GKX 1 REMARK REVDAT 2 29-AUG-18 6GKX 1 JRNL REVDAT 1 22-AUG-18 6GKX 0 JRNL AUTH N.SCHWEMMLEIN,J.PIPPEL,E.M.GAZDAG,W.BLANKENFELDT JRNL TITL CRYSTAL STRUCTURES OF R-TYPE BACTERIOCIN SHEATH AND TUBE JRNL TITL 2 PROTEINS CD1363 AND CD1364 FROMCLOSTRIDIUM DIFFICILEIN THE JRNL TITL 3 PRE-ASSEMBLED STATE. JRNL REF FRONT MICROBIOL V. 9 1750 2018 JRNL REFN ESSN 1664-302X JRNL PMID 30127773 JRNL DOI 10.3389/FMICB.2018.01750 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3112 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8340 - 2.9995 1.00 3216 138 0.1845 0.2022 REMARK 3 2 2.9995 - 2.3809 1.00 2981 154 0.1957 0.2162 REMARK 3 3 2.3809 - 2.0800 1.00 2896 173 0.1798 0.2332 REMARK 3 4 2.0800 - 1.8898 1.00 2890 140 0.1839 0.2101 REMARK 3 5 1.8898 - 1.7544 1.00 2893 151 0.1971 0.2380 REMARK 3 6 1.7544 - 1.6510 1.00 2825 144 0.2173 0.2679 REMARK 3 7 1.6510 - 1.5683 1.00 2879 147 0.2344 0.2989 REMARK 3 8 1.5683 - 1.5000 1.00 2839 130 0.2678 0.3095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4926 22.2677 92.1791 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.2021 REMARK 3 T33: 0.2410 T12: 0.0672 REMARK 3 T13: -0.0471 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 4.4412 L22: 1.6394 REMARK 3 L33: 5.6552 L12: 0.5105 REMARK 3 L13: 1.1138 L23: -0.2554 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: -0.2021 S13: 0.1226 REMARK 3 S21: 0.2546 S22: 0.1326 S23: -0.1076 REMARK 3 S31: -0.1550 S32: 0.5151 S33: -0.0557 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8804 25.1379 90.8252 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1813 REMARK 3 T33: 0.2040 T12: 0.0491 REMARK 3 T13: -0.0285 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 4.2575 L22: 6.0023 REMARK 3 L33: 5.9575 L12: 1.5719 REMARK 3 L13: 2.2250 L23: 3.7901 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: -0.0711 S13: -0.1462 REMARK 3 S21: 0.2566 S22: 0.3236 S23: -0.3367 REMARK 3 S31: -0.0153 S32: 0.3831 S33: -0.2184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5446 30.6596 109.6565 REMARK 3 T TENSOR REMARK 3 T11: 0.3893 T22: 0.7152 REMARK 3 T33: 0.2476 T12: 0.1130 REMARK 3 T13: -0.0067 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 7.3893 L22: 5.9603 REMARK 3 L33: 6.5803 L12: -5.5325 REMARK 3 L13: -6.5304 L23: 5.3849 REMARK 3 S TENSOR REMARK 3 S11: 0.5534 S12: 0.1655 S13: -0.1889 REMARK 3 S21: -0.8182 S22: -0.8070 S23: 0.6787 REMARK 3 S31: -0.3084 S32: -0.9292 S33: 0.2974 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8359 26.1369 83.0302 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1824 REMARK 3 T33: 0.2034 T12: -0.0237 REMARK 3 T13: 0.0194 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 6.6307 L22: 5.3534 REMARK 3 L33: 4.5622 L12: -1.2292 REMARK 3 L13: -0.7341 L23: 2.9253 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.3235 S13: -0.3120 REMARK 3 S21: -0.0535 S22: 0.1177 S23: -0.2706 REMARK 3 S31: 0.2913 S32: 0.3954 S33: -0.1523 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6544 27.5371 75.2204 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.1903 REMARK 3 T33: 0.2226 T12: 0.0069 REMARK 3 T13: -0.0260 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 4.7474 L22: 4.4937 REMARK 3 L33: 8.2802 L12: -4.5232 REMARK 3 L13: -4.7958 L23: 4.3671 REMARK 3 S TENSOR REMARK 3 S11: 0.5543 S12: 0.1412 S13: -0.0637 REMARK 3 S21: -0.3686 S22: -0.0843 S23: 0.2334 REMARK 3 S31: -0.5826 S32: 0.1299 S33: -0.4603 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6073 23.7818 87.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1567 REMARK 3 T33: 0.1503 T12: 0.0147 REMARK 3 T13: 0.0126 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 9.3164 L22: 6.6333 REMARK 3 L33: 6.8502 L12: -5.2026 REMARK 3 L13: 6.4058 L23: -4.5773 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.1543 S13: -0.3297 REMARK 3 S21: 0.1494 S22: 0.1298 S23: 0.1361 REMARK 3 S31: 0.1164 S32: 0.2683 S33: -0.1379 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8809 24.5159 91.1959 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.2066 REMARK 3 T33: 0.1907 T12: 0.0325 REMARK 3 T13: -0.0432 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 2.0891 L22: 3.8298 REMARK 3 L33: 4.3637 L12: -0.6931 REMARK 3 L13: 0.1817 L23: -1.6607 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0376 S13: 0.0391 REMARK 3 S21: 0.2504 S22: 0.0519 S23: -0.2677 REMARK 3 S31: 0.1264 S32: 0.4193 S33: 0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.80 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 25.90 REMARK 200 R MERGE FOR SHELL (I) : 2.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2GUJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M AMMONIUMCHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.40650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 18.16150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 18.16150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 162.60975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 18.16150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 18.16150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.20325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 18.16150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 18.16150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 162.60975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 18.16150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 18.16150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.20325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.40650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 50 REMARK 465 THR A 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 TYR A 53 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 8 O HOH A 202 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -113.45 -117.96 REMARK 500 ASP A 20 -129.93 52.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GKX A 1 142 UNP Q18BM9 Q18BM9_PEPD6 1 142 SEQADV 6GKX MET A -2 UNP Q18BM9 INITIATING METHIONINE SEQADV 6GKX GLY A -1 UNP Q18BM9 EXPRESSION TAG SEQADV 6GKX PRO A 0 UNP Q18BM9 EXPRESSION TAG SEQRES 1 A 145 MET GLY PRO MET ALA ASN MET GLU ALA ARG ASN VAL MET SEQRES 2 A 145 SER GLY THR TRP GLY GLU LEU TRP LEU ASP GLY ASN LYS SEQRES 3 A 145 VAL ALA GLU VAL LYS LYS PHE GLN ALA LYS MET GLU PHE SEQRES 4 A 145 THR LYS GLU ASP ILE ILE ILE ALA GLY GLN MET GLY THR SEQRES 5 A 145 ASP THR LYS TYR MET GLY TYR LYS GLY LYS GLY SER ILE SEQRES 6 A 145 THR LEU TYR HIS VAL SER SER ARG MET HIS LYS LEU ILE SEQRES 7 A 145 GLY GLU LYS ILE LYS ARG GLY SER GLU PRO ARG PHE VAL SEQRES 8 A 145 ALA ILE SER LYS LEU ASN ASP PRO ASP SER TYR GLY ALA SEQRES 9 A 145 GLU ARG ILE ALA VAL LYS ASN ILE ALA PHE ASP ASP LEU SEQRES 10 A 145 THR LEU ALA ASP TRP GLU VAL GLY VAL LYS GLY GLU ILE SEQRES 11 A 145 GLU ALA PRO PHE THR PHE THR GLU TYR ASP PHE LEU ASP SEQRES 12 A 145 ILE ILE FORMUL 2 HOH *129(H2 O) HELIX 1 AA1 THR A 37 GLY A 45 1 9 HELIX 2 AA2 ARG A 70 GLY A 82 1 13 HELIX 3 AA3 ASP A 95 GLY A 100 1 6 HELIX 4 AA4 THR A 115 GLY A 125 1 11 SHEET 1 AA1 7 GLU A 126 PHE A 133 0 SHEET 2 AA1 7 LYS A 57 TYR A 65 -1 N LEU A 64 O ILE A 127 SHEET 3 AA1 7 ASN A 22 GLU A 35 -1 N LYS A 33 O LYS A 59 SHEET 4 AA1 7 MET A 10 LEU A 19 -1 N MET A 10 O ALA A 32 SHEET 5 AA1 7 PHE A 87 LEU A 93 -1 O VAL A 88 N TRP A 18 SHEET 6 AA1 7 ALA A 101 ILE A 109 -1 O VAL A 106 N ALA A 89 SHEET 7 AA1 7 GLU A 135 ILE A 141 -1 O LEU A 139 N ARG A 103 CRYST1 36.323 36.323 216.813 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004612 0.00000