HEADER TRANSFERASE 22-MAY-18 6GKY TITLE CRYSTAL STRUCTURE OF COCLAURINE N-METHYLTRANSFERASE (CNMT) BOUND TO N- TITLE 2 METHYLHELIAMINE AND SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: COCLAURINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPTIS JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE GOLDTHREAD; SOURCE 4 ORGANISM_TAXID: 3442; SOURCE 5 GENE: CNMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-METHYLHELIAMINE, COCLAURINE N-METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.DUNSTAN,C.W.LEVY REVDAT 4 15-MAY-24 6GKY 1 REMARK REVDAT 3 29-AUG-18 6GKY 1 JRNL REVDAT 2 13-JUN-18 6GKY 1 REMARK REVDAT 1 06-JUN-18 6GKY 0 JRNL AUTH M.R.BENNETT,M.L.THOMPSON,S.A.SHEPHERD,M.S.DUNSTAN, JRNL AUTH 2 A.J.HERBERT,D.R.M.SMITH,V.A.CRONIN,B.R.K.MENON,C.LEVY, JRNL AUTH 3 J.MICKLEFIELD JRNL TITL STRUCTURE AND BIOCATALYTIC SCOPE OF COCLAURINE JRNL TITL 2 N-METHYLTRANSFERASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 10600 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29791083 JRNL DOI 10.1002/ANIE.201805060 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1032 - 5.1717 0.99 2889 163 0.1955 0.2522 REMARK 3 2 5.1717 - 4.1058 1.00 2783 136 0.1825 0.2925 REMARK 3 3 4.1058 - 3.5870 1.00 2731 145 0.2116 0.2951 REMARK 3 4 3.5870 - 3.2591 1.00 2734 134 0.2380 0.3158 REMARK 3 5 3.2591 - 3.0256 1.00 2709 140 0.2941 0.3772 REMARK 3 6 3.0256 - 2.8472 0.98 2654 148 0.3128 0.3895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5960 REMARK 3 ANGLE : 0.608 8058 REMARK 3 CHIRALITY : 0.024 880 REMARK 3 PLANARITY : 0.001 1018 REMARK 3 DIHEDRAL : 13.565 2234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9997 10.6762 -18.3869 REMARK 3 T TENSOR REMARK 3 T11: 0.4618 T22: 0.4818 REMARK 3 T33: 0.4753 T12: -0.0579 REMARK 3 T13: 0.0570 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.9723 L22: 1.9567 REMARK 3 L33: 2.8685 L12: 0.5373 REMARK 3 L13: 0.5357 L23: -0.3510 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.3461 S13: -0.0300 REMARK 3 S21: 0.2509 S22: 0.1941 S23: 0.1590 REMARK 3 S31: 0.3637 S32: -0.7564 S33: -0.1482 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1953 24.6800 -20.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.4391 T22: 0.7083 REMARK 3 T33: 0.6069 T12: -0.0389 REMARK 3 T13: -0.0331 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.8343 L22: 2.2177 REMARK 3 L33: 1.5807 L12: -0.9484 REMARK 3 L13: 1.6963 L23: -0.9289 REMARK 3 S TENSOR REMARK 3 S11: -0.1876 S12: -0.4818 S13: 0.1774 REMARK 3 S21: 0.2690 S22: 0.1642 S23: -0.4867 REMARK 3 S31: -0.1564 S32: 0.2602 S33: -0.0337 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8689 36.1545 -21.2153 REMARK 3 T TENSOR REMARK 3 T11: 0.7282 T22: 0.4333 REMARK 3 T33: 0.6730 T12: -0.0864 REMARK 3 T13: -0.2133 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.3391 L22: 0.6367 REMARK 3 L33: 1.5098 L12: 0.8906 REMARK 3 L13: 1.0507 L23: 0.4658 REMARK 3 S TENSOR REMARK 3 S11: -0.3852 S12: -0.1384 S13: 0.6222 REMARK 3 S21: 0.2932 S22: 0.1254 S23: -0.3684 REMARK 3 S31: -0.7263 S32: 0.0798 S33: 0.1137 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9726 18.1737 -19.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.3529 REMARK 3 T33: 0.3376 T12: 0.0157 REMARK 3 T13: 0.0287 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 1.8773 L22: 2.8676 REMARK 3 L33: 2.7103 L12: -0.6229 REMARK 3 L13: 0.7150 L23: -1.0947 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.2323 S13: 0.0900 REMARK 3 S21: 0.0079 S22: 0.1229 S23: -0.1831 REMARK 3 S31: 0.1245 S32: -0.0734 S33: -0.0669 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7049 40.1716 56.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 0.4956 REMARK 3 T33: 0.4786 T12: -0.0982 REMARK 3 T13: -0.0246 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 2.1396 L22: 1.6827 REMARK 3 L33: 3.4794 L12: -0.5368 REMARK 3 L13: -1.6754 L23: 1.2126 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: -0.3530 S13: 0.0392 REMARK 3 S21: 0.1176 S22: 0.0555 S23: 0.0914 REMARK 3 S31: -0.5641 S32: 0.4309 S33: -0.3369 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1086 25.8649 61.2119 REMARK 3 T TENSOR REMARK 3 T11: 1.0059 T22: 0.8365 REMARK 3 T33: 0.7094 T12: -0.1914 REMARK 3 T13: 0.2378 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 2.0105 L22: 1.4495 REMARK 3 L33: 1.7551 L12: 0.3507 REMARK 3 L13: -1.6834 L23: 0.4220 REMARK 3 S TENSOR REMARK 3 S11: 0.1636 S12: -0.8233 S13: -0.2514 REMARK 3 S21: 0.7904 S22: -0.2029 S23: 0.5261 REMARK 3 S31: 0.2837 S32: 0.0533 S33: 0.3146 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3909 17.7666 49.9261 REMARK 3 T TENSOR REMARK 3 T11: 0.5494 T22: 0.7910 REMARK 3 T33: 0.6422 T12: -0.2008 REMARK 3 T13: 0.1454 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 0.9967 L22: 3.2146 REMARK 3 L33: 1.7728 L12: -1.0090 REMARK 3 L13: -0.4250 L23: -0.0885 REMARK 3 S TENSOR REMARK 3 S11: 0.1766 S12: 0.2025 S13: -0.1749 REMARK 3 S21: 0.9287 S22: -0.6253 S23: 0.7344 REMARK 3 S31: 0.2738 S32: -0.4376 S33: 0.4054 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9865 11.5164 57.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.8034 T22: 0.5527 REMARK 3 T33: 0.4867 T12: -0.1038 REMARK 3 T13: 0.0310 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 2.2030 L22: 2.4440 REMARK 3 L33: 2.8530 L12: 1.0070 REMARK 3 L13: -0.6627 L23: -1.6190 REMARK 3 S TENSOR REMARK 3 S11: 0.2772 S12: -0.4982 S13: -0.3977 REMARK 3 S21: 0.5257 S22: -0.4139 S23: -0.0986 REMARK 3 S31: 0.7744 S32: -0.1779 S33: 0.0459 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1906 30.6857 56.3742 REMARK 3 T TENSOR REMARK 3 T11: 0.7194 T22: 0.4657 REMARK 3 T33: 0.4117 T12: -0.0745 REMARK 3 T13: 0.0832 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.8837 L22: 2.4731 REMARK 3 L33: 1.9083 L12: -0.3549 REMARK 3 L13: -0.7271 L23: 0.7336 REMARK 3 S TENSOR REMARK 3 S11: 0.1734 S12: -0.3662 S13: 0.1690 REMARK 3 S21: 0.5595 S22: -0.2116 S23: 0.1310 REMARK 3 S31: -0.0307 S32: 0.0158 S33: 0.0865 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : X-AREA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.847 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ETHYLENE GLYCOL 0.1 M REMARK 280 HEPES/MOPS (PH 7.4) 37.5 % MPD_PEG 1K/PEG 3350 AND 1 MM ADOHCY, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.14750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.28350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.97850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.28350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.14750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.97850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -24.14750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 77.28350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 127 CG1 CG2 CD1 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 127 CG1 CG2 CD1 REMARK 470 ARG B 175 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 80 N GLU B 82 2.08 REMARK 500 O THR B 71 N VAL B 73 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 275 OG SER B 278 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 81 -0.28 72.81 REMARK 500 TYR A 151 57.70 -118.98 REMARK 500 GLU A 167 -97.72 -68.22 REMARK 500 TYR A 168 -40.33 -27.84 REMARK 500 ASN A 177 67.52 61.91 REMARK 500 LYS A 210 -73.61 -127.31 REMARK 500 THR A 238 -67.89 -120.96 REMARK 500 TYR A 241 147.60 -173.20 REMARK 500 MET A 316 -153.77 -76.95 REMARK 500 GLU A 347 -76.84 -128.57 REMARK 500 ALA B 70 126.35 -172.10 REMARK 500 THR B 71 -123.57 -75.00 REMARK 500 GLU B 72 -0.70 35.11 REMARK 500 LEU B 76 -97.57 2.12 REMARK 500 LEU B 80 -150.82 -125.64 REMARK 500 TYR B 81 -14.63 18.32 REMARK 500 GLU B 82 37.48 -93.14 REMARK 500 LYS B 210 -74.00 -122.27 REMARK 500 THR B 238 -59.21 -126.29 REMARK 500 TYR B 241 149.95 -177.93 REMARK 500 ASP B 247 -154.18 -167.55 REMARK 500 MET B 316 -153.30 -82.39 REMARK 500 GLU B 347 -70.98 -115.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 74 THR B 75 147.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F2Z A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F2Z B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GKV RELATED DB: PDB REMARK 900 CMNT N-METHYLHELIAMINE DBREF 6GKY A 7 357 UNP Q948P7 Q948P7_COPJA 7 357 DBREF 6GKY B 7 357 UNP Q948P7 Q948P7_COPJA 7 357 SEQRES 1 A 351 GLN THR LYS LYS ALA ALA ILE VAL GLU LEU LEU LYS GLN SEQRES 2 A 351 LEU GLU LEU GLY LEU VAL PRO TYR ASP ASP ILE LYS GLN SEQRES 3 A 351 LEU ILE ARG ARG GLU LEU ALA ARG ARG LEU GLN TRP GLY SEQRES 4 A 351 TYR LYS PRO THR TYR GLU GLU GLN ILE ALA GLU ILE GLN SEQRES 5 A 351 ASN LEU THR HIS SER LEU ARG GLN MET LYS ILE ALA THR SEQRES 6 A 351 GLU VAL GLU THR LEU ASP SER GLN LEU TYR GLU ILE PRO SEQRES 7 A 351 ILE GLU PHE LEU LYS ILE MET ASN GLY SER ASN LEU LYS SEQRES 8 A 351 GLY SER CYS CYS TYR PHE LYS GLU ASP SER THR THR LEU SEQRES 9 A 351 ASP GLU ALA GLU ILE ALA MET LEU ASP LEU TYR CYS GLU SEQRES 10 A 351 ARG ALA GLN ILE GLN ASP GLY GLN SER VAL LEU ASP LEU SEQRES 11 A 351 GLY CYS GLY GLN GLY ALA LEU THR LEU HIS VAL ALA GLN SEQRES 12 A 351 LYS TYR LYS ASN CYS ARG VAL THR ALA VAL THR ASN SER SEQRES 13 A 351 VAL SER GLN LYS GLU TYR ILE GLU GLU GLU SER ARG ARG SEQRES 14 A 351 ARG ASN LEU LEU ASN VAL GLU VAL LYS LEU ALA ASP ILE SEQRES 15 A 351 THR THR HIS GLU MET ALA GLU THR TYR ASP ARG ILE LEU SEQRES 16 A 351 VAL ILE GLU LEU PHE GLU HIS MET LYS ASN TYR GLU LEU SEQRES 17 A 351 LEU LEU ARG LYS ILE SER GLU TRP ILE SER LYS ASP GLY SEQRES 18 A 351 LEU LEU PHE LEU GLU HIS ILE CYS HIS LYS THR PHE ALA SEQRES 19 A 351 TYR HIS TYR GLU PRO LEU ASP ASP ASP ASP TRP PHE THR SEQRES 20 A 351 GLU TYR VAL PHE PRO ALA GLY THR MET ILE ILE PRO SER SEQRES 21 A 351 ALA SER PHE PHE LEU TYR PHE GLN ASP ASP VAL SER VAL SEQRES 22 A 351 VAL ASN HIS TRP THR LEU SER GLY LYS HIS PHE SER ARG SEQRES 23 A 351 THR ASN GLU GLU TRP LEU LYS ARG LEU ASP ALA ASN LEU SEQRES 24 A 351 ASP VAL ILE LYS PRO MET PHE GLU THR LEU MET GLY ASN SEQRES 25 A 351 GLU GLU GLU ALA VAL LYS LEU ILE ASN TYR TRP ARG GLY SEQRES 26 A 351 PHE CYS LEU SER GLY MET GLU MET PHE GLY TYR ASN ASN SEQRES 27 A 351 GLY GLU GLU TRP MET ALA SER HIS VAL LEU PHE LYS LYS SEQRES 1 B 351 GLN THR LYS LYS ALA ALA ILE VAL GLU LEU LEU LYS GLN SEQRES 2 B 351 LEU GLU LEU GLY LEU VAL PRO TYR ASP ASP ILE LYS GLN SEQRES 3 B 351 LEU ILE ARG ARG GLU LEU ALA ARG ARG LEU GLN TRP GLY SEQRES 4 B 351 TYR LYS PRO THR TYR GLU GLU GLN ILE ALA GLU ILE GLN SEQRES 5 B 351 ASN LEU THR HIS SER LEU ARG GLN MET LYS ILE ALA THR SEQRES 6 B 351 GLU VAL GLU THR LEU ASP SER GLN LEU TYR GLU ILE PRO SEQRES 7 B 351 ILE GLU PHE LEU LYS ILE MET ASN GLY SER ASN LEU LYS SEQRES 8 B 351 GLY SER CYS CYS TYR PHE LYS GLU ASP SER THR THR LEU SEQRES 9 B 351 ASP GLU ALA GLU ILE ALA MET LEU ASP LEU TYR CYS GLU SEQRES 10 B 351 ARG ALA GLN ILE GLN ASP GLY GLN SER VAL LEU ASP LEU SEQRES 11 B 351 GLY CYS GLY GLN GLY ALA LEU THR LEU HIS VAL ALA GLN SEQRES 12 B 351 LYS TYR LYS ASN CYS ARG VAL THR ALA VAL THR ASN SER SEQRES 13 B 351 VAL SER GLN LYS GLU TYR ILE GLU GLU GLU SER ARG ARG SEQRES 14 B 351 ARG ASN LEU LEU ASN VAL GLU VAL LYS LEU ALA ASP ILE SEQRES 15 B 351 THR THR HIS GLU MET ALA GLU THR TYR ASP ARG ILE LEU SEQRES 16 B 351 VAL ILE GLU LEU PHE GLU HIS MET LYS ASN TYR GLU LEU SEQRES 17 B 351 LEU LEU ARG LYS ILE SER GLU TRP ILE SER LYS ASP GLY SEQRES 18 B 351 LEU LEU PHE LEU GLU HIS ILE CYS HIS LYS THR PHE ALA SEQRES 19 B 351 TYR HIS TYR GLU PRO LEU ASP ASP ASP ASP TRP PHE THR SEQRES 20 B 351 GLU TYR VAL PHE PRO ALA GLY THR MET ILE ILE PRO SER SEQRES 21 B 351 ALA SER PHE PHE LEU TYR PHE GLN ASP ASP VAL SER VAL SEQRES 22 B 351 VAL ASN HIS TRP THR LEU SER GLY LYS HIS PHE SER ARG SEQRES 23 B 351 THR ASN GLU GLU TRP LEU LYS ARG LEU ASP ALA ASN LEU SEQRES 24 B 351 ASP VAL ILE LYS PRO MET PHE GLU THR LEU MET GLY ASN SEQRES 25 B 351 GLU GLU GLU ALA VAL LYS LEU ILE ASN TYR TRP ARG GLY SEQRES 26 B 351 PHE CYS LEU SER GLY MET GLU MET PHE GLY TYR ASN ASN SEQRES 27 B 351 GLY GLU GLU TRP MET ALA SER HIS VAL LEU PHE LYS LYS HET SAH A 501 26 HET F2Z A 502 28 HET SAH B 501 26 HET F2Z B 502 28 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM F2Z 6,7-DIMETHOXY-2,4-DIHYDRO-1~{H}-ISOQUINOLIN-3-ONE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 F2Z 2(C11 H13 N O3) HELIX 1 AA1 GLN A 7 LEU A 22 1 16 HELIX 2 AA2 PRO A 26 TYR A 46 1 21 HELIX 3 AA3 THR A 49 ARG A 65 1 17 HELIX 4 AA4 THR A 75 LEU A 80 1 6 HELIX 5 AA5 PRO A 84 ASN A 92 1 9 HELIX 6 AA6 THR A 109 GLN A 126 1 18 HELIX 7 AA7 GLY A 141 LYS A 150 1 10 HELIX 8 AA8 SER A 162 ARG A 175 1 14 HELIX 9 AA9 LEU A 205 MET A 209 5 5 HELIX 10 AB1 ASN A 211 TRP A 222 1 12 HELIX 11 AB2 SER A 268 TYR A 272 5 5 HELIX 12 AB3 GLY A 287 ASN A 304 1 18 HELIX 13 AB4 ASN A 304 MET A 316 1 13 HELIX 14 AB5 ASN A 318 TYR A 342 1 25 HELIX 15 AB6 THR B 8 LEU B 22 1 15 HELIX 16 AB7 PRO B 26 TYR B 46 1 21 HELIX 17 AB8 THR B 49 ARG B 65 1 17 HELIX 18 AB9 PRO B 84 ASN B 92 1 9 HELIX 19 AC1 THR B 109 GLN B 126 1 18 HELIX 20 AC2 GLY B 141 TYR B 151 1 11 HELIX 21 AC3 SER B 162 ARG B 175 1 14 HELIX 22 AC4 LEU B 205 MET B 209 5 5 HELIX 23 AC5 ASN B 211 GLU B 221 1 11 HELIX 24 AC6 SER B 268 PHE B 273 5 6 HELIX 25 AC7 GLY B 287 ASN B 304 1 18 HELIX 26 AC8 ASN B 304 MET B 316 1 13 HELIX 27 AC9 ASN B 318 GLY B 341 1 24 SHEET 1 AA1 7 GLU A 182 LEU A 185 0 SHEET 2 AA1 7 THR A 157 THR A 160 1 N ALA A 158 O LYS A 184 SHEET 3 AA1 7 VAL A 133 LEU A 136 1 N ASP A 135 O THR A 157 SHEET 4 AA1 7 TYR A 197 ILE A 203 1 O LEU A 201 N LEU A 134 SHEET 5 AA1 7 ILE A 223 HIS A 236 1 O SER A 224 N TYR A 197 SHEET 6 AA1 7 TRP A 348 LYS A 356 -1 O PHE A 355 N LEU A 229 SHEET 7 AA1 7 SER A 278 LEU A 285 -1 N VAL A 280 O LEU A 354 SHEET 1 AA2 2 TYR A 241 HIS A 242 0 SHEET 2 AA2 2 ILE A 263 ILE A 264 -1 O ILE A 264 N TYR A 241 SHEET 1 AA3 7 GLU B 182 LEU B 185 0 SHEET 2 AA3 7 THR B 157 THR B 160 1 N ALA B 158 O LYS B 184 SHEET 3 AA3 7 VAL B 133 LEU B 136 1 N ASP B 135 O THR B 157 SHEET 4 AA3 7 TYR B 197 ILE B 203 1 O LEU B 201 N LEU B 134 SHEET 5 AA3 7 ILE B 223 HIS B 236 1 O SER B 224 N TYR B 197 SHEET 6 AA3 7 TRP B 348 LYS B 356 -1 O MET B 349 N CYS B 235 SHEET 7 AA3 7 SER B 278 LEU B 285 -1 N VAL B 280 O LEU B 354 SHEET 1 AA4 2 TYR B 241 HIS B 242 0 SHEET 2 AA4 2 ILE B 263 ILE B 264 -1 O ILE B 264 N TYR B 241 SITE 1 AC1 15 VAL A 73 TYR A 81 GLY A 98 SER A 99 SITE 2 AC1 15 GLY A 137 CYS A 138 GLY A 139 ASN A 161 SITE 3 AC1 15 GLN A 165 ASP A 187 ILE A 188 ILE A 203 SITE 4 AC1 15 GLU A 204 LEU A 205 MET A 209 SITE 1 AC2 5 TYR A 81 GLU A 204 HIS A 208 PHE A 257 SITE 2 AC2 5 PHE A 290 SITE 1 AC3 13 TYR B 81 GLY B 98 SER B 99 GLY B 137 SITE 2 AC3 13 CYS B 138 GLY B 139 ASN B 161 GLN B 165 SITE 3 AC3 13 ASP B 187 ILE B 188 ILE B 203 GLU B 204 SITE 4 AC3 13 LEU B 205 SITE 1 AC4 6 TYR B 81 GLU B 204 HIS B 208 ILE B 234 SITE 2 AC4 6 PHE B 257 PHE B 290 CRYST1 48.295 95.957 154.567 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006470 0.00000