HEADER OXIDOREDUCTASE 23-MAY-18 6GL6 TITLE APO [FEFE]-HYDROGENASE HYDA1 FROM CHLAMYDOMONAS REINHARDTII, VARIANT TITLE 2 C377H COMPND MOL_ID: 1; COMPND 2 MOLECULE: FE-HYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IRON HYDROGENASE,IRON-HYDROGENASE HYDA1; COMPND 5 EC: 1.18.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 4 ORGANISM_TAXID: 3055; SOURCE 5 GENE: HYD1, HYD1, HYDA, HYDA1, CHLRE_03G199800V5, CHLREDRAFT_183963; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DISCR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS [FEFE]-HYDROGENASE, IRON SULFUR CLUSTER BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.KERTESS,T.HAPPE,E.HOFMANN REVDAT 3 15-MAY-24 6GL6 1 REMARK LINK REVDAT 2 01-MAY-19 6GL6 1 JRNL REVDAT 1 26-DEC-18 6GL6 0 JRNL AUTH P.RODRIGUEZ-MACIA,L.KERTESS,J.BURNIK,J.A.BIRRELL,E.HOFMANN, JRNL AUTH 2 W.LUBITZ,T.HAPPE,O.RUDIGER JRNL TITL HIS-LIGATION TO THE [4FE-4S] SUBCLUSTER TUNES THE CATALYTIC JRNL TITL 2 BIAS OF [FEFE] HYDROGENASE. JRNL REF J.AM.CHEM.SOC. V. 141 472 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30545220 JRNL DOI 10.1021/JACS.8B11149 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 80741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9061 - 5.4926 1.00 2629 143 0.1835 0.1524 REMARK 3 2 5.4926 - 4.3748 1.00 2638 149 0.1335 0.1449 REMARK 3 3 4.3748 - 3.8263 1.00 2649 146 0.1274 0.1530 REMARK 3 4 3.8263 - 3.4785 1.00 2652 142 0.1416 0.2112 REMARK 3 5 3.4785 - 3.2303 1.00 2627 146 0.1449 0.1663 REMARK 3 6 3.2303 - 3.0405 1.00 2685 134 0.1575 0.1895 REMARK 3 7 3.0405 - 2.8887 1.00 2661 138 0.1598 0.2175 REMARK 3 8 2.8887 - 2.7633 1.00 2618 148 0.1725 0.1867 REMARK 3 9 2.7633 - 2.6572 1.00 2643 136 0.1617 0.2368 REMARK 3 10 2.6572 - 2.5657 1.00 2630 142 0.1662 0.2085 REMARK 3 11 2.5657 - 2.4856 1.00 2644 136 0.1589 0.1811 REMARK 3 12 2.4856 - 2.4147 1.00 2632 136 0.1571 0.2084 REMARK 3 13 2.4147 - 2.3512 1.00 2638 142 0.1562 0.1919 REMARK 3 14 2.3512 - 2.2940 1.00 2676 154 0.1564 0.2046 REMARK 3 15 2.2940 - 2.2419 1.00 2664 128 0.1720 0.2518 REMARK 3 16 2.2419 - 2.1942 1.00 2602 138 0.1824 0.1983 REMARK 3 17 2.1942 - 2.1504 1.00 2618 136 0.1935 0.2179 REMARK 3 18 2.1504 - 2.1099 1.00 2687 136 0.1902 0.2301 REMARK 3 19 2.1099 - 2.0722 1.00 2674 138 0.2051 0.2304 REMARK 3 20 2.0722 - 2.0371 1.00 2615 144 0.2310 0.2466 REMARK 3 21 2.0371 - 2.0043 1.00 2669 134 0.2369 0.2570 REMARK 3 22 2.0043 - 1.9735 1.00 2604 140 0.2501 0.2701 REMARK 3 23 1.9735 - 1.9445 1.00 2657 132 0.2679 0.3245 REMARK 3 24 1.9445 - 1.9171 1.00 2649 140 0.2798 0.3087 REMARK 3 25 1.9171 - 1.8912 1.00 2669 140 0.2733 0.3094 REMARK 3 26 1.8912 - 1.8667 1.00 2617 144 0.2775 0.2753 REMARK 3 27 1.8667 - 1.8434 1.00 2688 144 0.2832 0.3091 REMARK 3 28 1.8434 - 1.8212 1.00 2603 132 0.2823 0.3480 REMARK 3 29 1.8212 - 1.8000 1.00 2647 138 0.2974 0.3256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3161 REMARK 3 ANGLE : 0.961 4285 REMARK 3 CHIRALITY : 0.036 478 REMARK 3 PLANARITY : 0.004 555 REMARK 3 DIHEDRAL : 13.502 1179 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.905 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.975 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 2.00800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 12% PEG 4000, 0.6 M NACL, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.96667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.96667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 963 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 HIS A 116 REMARK 465 PRO A 117 REMARK 465 HIS A 118 REMARK 465 SER A 119 REMARK 465 ASP A 120 REMARK 465 HIS A 308 REMARK 465 ARG A 309 REMARK 465 ALA A 310 REMARK 465 ALA A 311 REMARK 465 ALA A 312 REMARK 465 ARG A 313 REMARK 465 ALA A 314 REMARK 465 GLU A 315 REMARK 465 ALA A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 HIS A 319 REMARK 465 GLY A 320 REMARK 465 THR A 321 REMARK 465 PRO A 322 REMARK 465 GLU A 451 REMARK 465 GLU A 452 REMARK 465 LYS A 453 REMARK 465 ASP A 454 REMARK 465 GLU A 455 REMARK 465 LYS A 456 REMARK 465 LYS A 457 REMARK 465 SER A 458 REMARK 465 ALA A 459 REMARK 465 TRP A 460 REMARK 465 SER A 461 REMARK 465 HIS A 462 REMARK 465 PRO A 463 REMARK 465 GLN A 464 REMARK 465 PHE A 465 REMARK 465 GLU A 466 REMARK 465 LYS A 467 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 282 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 164 -82.18 -114.50 REMARK 500 TYR A 428 -53.47 -142.21 REMARK 500 LEU A 433 -0.39 69.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 972 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 O REMARK 620 2 HOH A 665 O 88.0 REMARK 620 3 HOH A 696 O 84.7 172.7 REMARK 620 4 HOH A 701 O 86.1 78.5 100.9 REMARK 620 5 HOH A 792 O 102.2 92.8 88.8 167.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 SF4 A 501 S2 119.1 REMARK 620 3 SF4 A 501 S3 112.3 105.6 REMARK 620 4 SF4 A 501 S4 108.7 104.7 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 185 SG REMARK 620 2 SF4 A 501 S1 103.3 REMARK 620 3 SF4 A 501 S2 123.8 104.4 REMARK 620 4 SF4 A 501 S4 115.1 104.4 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 236 O REMARK 620 2 HOH A 647 O 85.9 REMARK 620 3 HOH A 733 O 84.5 107.7 REMARK 620 4 HOH A 767 O 106.5 65.5 166.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 377 ND1 REMARK 620 2 SF4 A 501 S1 115.9 REMARK 620 3 SF4 A 501 S3 121.9 103.9 REMARK 620 4 SF4 A 501 S4 102.9 105.3 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 SF4 A 501 S1 113.8 REMARK 620 3 SF4 A 501 S2 107.2 105.2 REMARK 620 4 SF4 A 501 S3 121.1 103.5 104.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO3 A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LX4 RELATED DB: PDB REMARK 900 3LX4 REPRESENTS WILD-TYPE OF MY HYDA1 VARIANT C377H DBREF 6GL6 A 17 457 UNP Q9FYU1 Q9FYU1_CHLRE 57 497 SEQADV 6GL6 MET A 16 UNP Q9FYU1 INITIATING METHIONINE SEQADV 6GL6 HIS A 377 UNP Q9FYU1 CYS 417 ENGINEERED MUTATION SEQADV 6GL6 SER A 458 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 ALA A 459 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 TRP A 460 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 SER A 461 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 HIS A 462 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 PRO A 463 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 GLN A 464 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 PHE A 465 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 GLU A 466 UNP Q9FYU1 EXPRESSION TAG SEQADV 6GL6 LYS A 467 UNP Q9FYU1 EXPRESSION TAG SEQRES 1 A 452 MET ALA ALA PRO ALA ALA GLU ALA PRO LEU SER HIS VAL SEQRES 2 A 452 GLN GLN ALA LEU ALA GLU LEU ALA LYS PRO LYS ASP ASP SEQRES 3 A 452 PRO THR ARG LYS HIS VAL CYS VAL GLN VAL ALA PRO ALA SEQRES 4 A 452 VAL ARG VAL ALA ILE ALA GLU THR LEU GLY LEU ALA PRO SEQRES 5 A 452 GLY ALA THR THR PRO LYS GLN LEU ALA GLU GLY LEU ARG SEQRES 6 A 452 ARG LEU GLY PHE ASP GLU VAL PHE ASP THR LEU PHE GLY SEQRES 7 A 452 ALA ASP LEU THR ILE MET GLU GLU GLY SER GLU LEU LEU SEQRES 8 A 452 HIS ARG LEU THR GLU HIS LEU GLU ALA HIS PRO HIS SER SEQRES 9 A 452 ASP GLU PRO LEU PRO MET PHE THR SER CYS CYS PRO GLY SEQRES 10 A 452 TRP ILE ALA MET LEU GLU LYS SER TYR PRO ASP LEU ILE SEQRES 11 A 452 PRO TYR VAL SER SER CYS LYS SER PRO GLN MET MET LEU SEQRES 12 A 452 ALA ALA MET VAL LYS SER TYR LEU ALA GLU LYS LYS GLY SEQRES 13 A 452 ILE ALA PRO LYS ASP MET VAL MET VAL SER ILE MET PRO SEQRES 14 A 452 CYS THR ARG LYS GLN SER GLU ALA ASP ARG ASP TRP PHE SEQRES 15 A 452 CYS VAL ASP ALA ASP PRO THR LEU ARG GLN LEU ASP HIS SEQRES 16 A 452 VAL ILE THR THR VAL GLU LEU GLY ASN ILE PHE LYS GLU SEQRES 17 A 452 ARG GLY ILE ASN LEU ALA GLU LEU PRO GLU GLY GLU TRP SEQRES 18 A 452 ASP ASN PRO MET GLY VAL GLY SER GLY ALA GLY VAL LEU SEQRES 19 A 452 PHE GLY THR THR GLY GLY VAL MET GLU ALA ALA LEU ARG SEQRES 20 A 452 THR ALA TYR GLU LEU PHE THR GLY THR PRO LEU PRO ARG SEQRES 21 A 452 LEU SER LEU SER GLU VAL ARG GLY MET ASP GLY ILE LYS SEQRES 22 A 452 GLU THR ASN ILE THR MET VAL PRO ALA PRO GLY SER LYS SEQRES 23 A 452 PHE GLU GLU LEU LEU LYS HIS ARG ALA ALA ALA ARG ALA SEQRES 24 A 452 GLU ALA ALA ALA HIS GLY THR PRO GLY PRO LEU ALA TRP SEQRES 25 A 452 ASP GLY GLY ALA GLY PHE THR SER GLU ASP GLY ARG GLY SEQRES 26 A 452 GLY ILE THR LEU ARG VAL ALA VAL ALA ASN GLY LEU GLY SEQRES 27 A 452 ASN ALA LYS LYS LEU ILE THR LYS MET GLN ALA GLY GLU SEQRES 28 A 452 ALA LYS TYR ASP PHE VAL GLU ILE MET ALA HIS PRO ALA SEQRES 29 A 452 GLY CYS VAL GLY GLY GLY GLY GLN PRO ARG SER THR ASP SEQRES 30 A 452 LYS ALA ILE THR GLN LYS ARG GLN ALA ALA LEU TYR ASN SEQRES 31 A 452 LEU ASP GLU LYS SER THR LEU ARG ARG SER HIS GLU ASN SEQRES 32 A 452 PRO SER ILE ARG GLU LEU TYR ASP THR TYR LEU GLY GLU SEQRES 33 A 452 PRO LEU GLY HIS LYS ALA HIS GLU LEU LEU HIS THR HIS SEQRES 34 A 452 TYR VAL ALA GLY GLY VAL GLU GLU LYS ASP GLU LYS LYS SEQRES 35 A 452 SER ALA TRP SER HIS PRO GLN PHE GLU LYS HET SF4 A 501 8 HET CL A 502 1 HET NA A 503 1 HET NA A 504 1 HET SO3 A 505 4 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM SO3 SULFITE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 CL CL 1- FORMUL 4 NA 2(NA 1+) FORMUL 6 SO3 O3 S 2- FORMUL 7 HOH *373(H2 O) HELIX 1 AA1 SER A 26 LYS A 37 1 12 HELIX 2 AA2 ALA A 52 ILE A 59 1 8 HELIX 3 AA3 ALA A 60 GLY A 64 5 5 HELIX 4 AA4 THR A 71 LEU A 82 1 12 HELIX 5 AA5 THR A 90 ALA A 115 1 26 HELIX 6 AA6 CYS A 130 TYR A 141 1 12 HELIX 7 AA7 PRO A 142 VAL A 148 5 7 HELIX 8 AA8 SER A 153 LYS A 163 1 11 HELIX 9 AA9 SER A 164 GLY A 171 1 8 HELIX 10 AB1 ALA A 173 LYS A 175 5 3 HELIX 11 AB2 ARG A 187 ASP A 193 1 7 HELIX 12 AB3 THR A 214 ARG A 224 1 11 HELIX 13 AB4 ASN A 227 LEU A 231 5 5 HELIX 14 AB5 GLY A 255 GLY A 270 1 16 HELIX 15 AB6 SER A 300 LYS A 307 1 8 HELIX 16 AB7 GLY A 351 ALA A 364 1 14 HELIX 17 AB8 ALA A 379 GLY A 384 5 6 HELIX 18 AB9 ALA A 394 LEU A 403 1 10 HELIX 19 AC1 ASN A 405 SER A 410 1 6 HELIX 20 AC2 ARG A 414 GLU A 417 5 4 HELIX 21 AC3 ASN A 418 TYR A 428 1 11 HELIX 22 AC4 GLY A 434 HIS A 442 1 9 SHEET 1 AA1 4 GLU A 86 ASP A 89 0 SHEET 2 AA1 4 HIS A 46 VAL A 51 1 N VAL A 49 O PHE A 88 SHEET 3 AA1 4 MET A 177 MET A 183 1 O VAL A 178 N CYS A 48 SHEET 4 AA1 4 HIS A 210 THR A 213 1 O ILE A 212 N SER A 181 SHEET 1 AA2 5 MET A 125 PHE A 126 0 SHEET 2 AA2 5 PHE A 371 MET A 375 1 O VAL A 372 N MET A 125 SHEET 3 AA2 5 GLY A 341 ASN A 350 1 N ALA A 349 O GLU A 373 SHEET 4 AA2 5 ILE A 287 MET A 294 -1 N ILE A 292 O LEU A 344 SHEET 5 AA2 5 SER A 279 GLU A 280 -1 N SER A 279 O GLU A 289 SHEET 1 AA3 4 MET A 125 PHE A 126 0 SHEET 2 AA3 4 PHE A 371 MET A 375 1 O VAL A 372 N MET A 125 SHEET 3 AA3 4 GLY A 341 ASN A 350 1 N ALA A 349 O GLU A 373 SHEET 4 AA3 4 ALA A 331 PHE A 333 -1 N ALA A 331 O THR A 343 SHEET 1 AA4 2 CYS A 198 VAL A 199 0 SHEET 2 AA4 2 ASP A 202 ARG A 206 -1 O LEU A 205 N VAL A 199 LINK O ASP A 85 NA NA A 504 1555 1555 2.28 LINK SG CYS A 130 FE1 SF4 A 501 1555 1555 2.39 LINK SG CYS A 185 FE3 SF4 A 501 1555 1555 2.43 LINK O TRP A 236 NA NA A 503 1555 1555 2.60 LINK ND1 HIS A 377 FE2 SF4 A 501 1555 1555 2.18 LINK SG CYS A 381 FE4 SF4 A 501 1555 1555 2.50 LINK NA NA A 503 O HOH A 647 1555 1555 2.48 LINK NA NA A 503 O HOH A 733 1555 1555 2.39 LINK NA NA A 503 O HOH A 767 1555 1555 2.43 LINK NA NA A 504 O HOH A 665 1555 1555 2.71 LINK NA NA A 504 O HOH A 696 1555 1555 2.41 LINK NA NA A 504 O HOH A 701 1555 1555 2.45 LINK NA NA A 504 O HOH A 792 1555 1555 2.45 CISPEP 1 LEU A 123 PRO A 124 0 1.97 SITE 1 AC1 8 CYS A 130 CYS A 185 ARG A 187 MET A 375 SITE 2 AC1 8 ALA A 376 HIS A 377 CYS A 381 GLY A 384 SITE 1 AC2 3 PRO A 154 GLN A 155 LYS A 188 SITE 1 AC3 5 GLU A 235 TRP A 236 HOH A 647 HOH A 733 SITE 2 AC3 5 HOH A 767 SITE 1 AC4 5 ASP A 85 HOH A 665 HOH A 696 HOH A 701 SITE 2 AC4 5 HOH A 792 SITE 1 AC5 6 CYS A 185 THR A 186 ARG A 187 HIS A 377 SITE 2 AC5 6 GLY A 385 GLY A 386 CRYST1 70.730 70.730 155.900 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014138 0.008163 0.000000 0.00000 SCALE2 0.000000 0.016325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006414 0.00000