HEADER TRANSFERASE 23-MAY-18 6GLB TITLE CRYSTAL STRUCTURE OF JAK3 IN COMPLEX WITH COMPOUND 20 (FM484) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE JAK3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: JANUS KINASE 3,JAK-3,LEUKOCYTE JANUS KINASE,L-JAK; COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JAK3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID KEYWDS KINASE, JAK3, COVALENT INHIBITOR, REVERSIBLE COVALENT INHIBITOR, KEYWDS 2 INDUCED POCKET, ARGININE POCKET, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,M.FORSTER,F.VON DELFT,A.M.EDWARDS,C.H.ARROWSMITH, AUTHOR 2 C.BOUNTRA,S.A.LAUFER,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 17-JAN-24 6GLB 1 REMARK REVDAT 2 11-JUL-18 6GLB 1 JRNL REVDAT 1 27-JUN-18 6GLB 0 JRNL AUTH M.FORSTER,A.CHAIKUAD,T.DIMITROV,E.DORING,J.HOLSTEIN, JRNL AUTH 2 B.T.BERGER,M.GEHRINGER,K.GHORESCHI,S.MULLER,S.KNAPP, JRNL AUTH 3 S.A.LAUFER JRNL TITL DEVELOPMENT, OPTIMIZATION, AND STRUCTURE-ACTIVITY JRNL TITL 2 RELATIONSHIPS OF COVALENT-REVERSIBLE JAK3 INHIBITORS BASED JRNL TITL 3 ON A TRICYCLIC IMIDAZO[5,4- D]PYRROLO[2,3- B]PYRIDINE JRNL TITL 4 SCAFFOLD. JRNL REF J. MED. CHEM. V. 61 5350 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29852068 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00571 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 29323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.32000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 1.35000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : -0.09000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.351 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.928 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.851 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4805 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4565 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6490 ; 1.563 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10493 ; 1.073 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 6.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;32.437 ;22.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 808 ;14.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5676 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1152 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2308 ; 0.863 ; 1.494 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2303 ; 0.864 ; 1.494 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2878 ; 1.549 ; 2.234 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2877 ; 1.549 ; 2.234 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2497 ; 0.708 ; 1.564 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2497 ; 0.708 ; 1.564 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3611 ; 1.219 ; 2.305 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5426 ; 4.166 ;11.760 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5427 ; 4.166 ;11.763 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 813 1103 B 813 1103 36118 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 813 A 990 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0089 54.5597 7.7297 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.1248 REMARK 3 T33: 0.0132 T12: -0.0690 REMARK 3 T13: -0.0008 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.8160 L22: 0.7298 REMARK 3 L33: 0.2016 L12: -0.0331 REMARK 3 L13: -0.1869 L23: -0.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.0407 S13: 0.0751 REMARK 3 S21: 0.0258 S22: -0.0196 S23: -0.0382 REMARK 3 S31: -0.0071 S32: 0.0032 S33: 0.0130 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 991 A 1103 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1290 35.1909 5.0279 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.1025 REMARK 3 T33: 0.0260 T12: -0.0669 REMARK 3 T13: 0.0177 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.1497 L22: 0.9316 REMARK 3 L33: 1.4364 L12: 0.0105 REMARK 3 L13: 0.1625 L23: 0.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.0134 S13: -0.1228 REMARK 3 S21: -0.0065 S22: 0.0204 S23: 0.0881 REMARK 3 S31: 0.0913 S32: -0.0274 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 813 B 990 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0134 45.0894 -23.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.1128 REMARK 3 T33: 0.0086 T12: -0.0629 REMARK 3 T13: 0.0067 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.8306 L22: 0.9094 REMARK 3 L33: 0.2138 L12: 0.0516 REMARK 3 L13: 0.3863 L23: 0.1258 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: 0.0517 S13: -0.0575 REMARK 3 S21: 0.0313 S22: -0.0374 S23: 0.0036 REMARK 3 S31: 0.0223 S32: 0.0115 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 991 B 1103 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9252 64.5786 -24.7815 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0751 REMARK 3 T33: 0.0537 T12: -0.0587 REMARK 3 T13: 0.0045 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.4421 L22: 0.2425 REMARK 3 L33: 1.0872 L12: 0.2285 REMARK 3 L13: -0.1699 L23: -0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0281 S13: 0.1011 REMARK 3 S21: 0.0057 S22: 0.0048 S23: -0.0636 REMARK 3 S31: -0.1403 S32: 0.0694 S33: -0.0083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 61.558 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-30% PEG 3350, 0.1 M MES, PH 5.5-6.0 REMARK 280 AND 0.1-0.2 M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 810 REMARK 465 MET A 811 REMARK 465 GLN A 812 REMARK 465 GLU A 985 REMARK 465 PRO A 986 REMARK 465 GLY A 987 REMARK 465 SER B 810 REMARK 465 MET B 811 REMARK 465 GLN B 812 REMARK 465 GLU B 985 REMARK 465 PRO B 986 REMARK 465 GLY B 987 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 813 CG OD1 OD2 REMARK 470 ARG A 895 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 896 CG CD OE1 NE2 REMARK 470 ASP B 813 CG OD1 OD2 REMARK 470 ARG B 895 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 896 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1009 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 918 -62.51 -22.90 REMARK 500 ALA A 949 24.63 -153.22 REMARK 500 ALA A 966 -165.11 -127.29 REMARK 500 ASP A 967 80.94 42.20 REMARK 500 PRO A 975 154.54 -49.58 REMARK 500 ARG B 918 -62.49 -21.75 REMARK 500 ALA B 949 26.29 -154.32 REMARK 500 ALA B 966 -165.95 -125.81 REMARK 500 ASP B 967 80.87 42.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F48 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHU A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F48 B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHU B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GLA RELATED DB: PDB REMARK 900 RELATED ID: 6GL9 RELATED DB: PDB DBREF 6GLB A 812 1103 UNP P52333 JAK3_HUMAN 812 1103 DBREF 6GLB B 812 1103 UNP P52333 JAK3_HUMAN 812 1103 SEQADV 6GLB SER A 810 UNP P52333 EXPRESSION TAG SEQADV 6GLB MET A 811 UNP P52333 EXPRESSION TAG SEQADV 6GLB ALA A 949 UNP P52333 ASP 949 CONFLICT SEQADV 6GLB SER A 1040 UNP P52333 CYS 1040 CONFLICT SEQADV 6GLB SER A 1048 UNP P52333 CYS 1048 CONFLICT SEQADV 6GLB SER B 810 UNP P52333 EXPRESSION TAG SEQADV 6GLB MET B 811 UNP P52333 EXPRESSION TAG SEQADV 6GLB ALA B 949 UNP P52333 ASP 949 CONFLICT SEQADV 6GLB SER B 1040 UNP P52333 CYS 1040 CONFLICT SEQADV 6GLB SER B 1048 UNP P52333 CYS 1048 CONFLICT SEQRES 1 A 294 SER MET GLN ASP PRO THR ILE PHE GLU GLU ARG HIS LEU SEQRES 2 A 294 LYS TYR ILE SER GLN LEU GLY LYS GLY ASN PHE GLY SER SEQRES 3 A 294 VAL GLU LEU CYS ARG TYR ASP PRO LEU GLY ASP ASN THR SEQRES 4 A 294 GLY ALA LEU VAL ALA VAL LYS GLN LEU GLN HIS SER GLY SEQRES 5 A 294 PRO ASP GLN GLN ARG ASP PHE GLN ARG GLU ILE GLN ILE SEQRES 6 A 294 LEU LYS ALA LEU HIS SER ASP PHE ILE VAL LYS TYR ARG SEQRES 7 A 294 GLY VAL SER TYR GLY PRO GLY ARG GLN SER LEU ARG LEU SEQRES 8 A 294 VAL MET GLU TYR LEU PRO SER GLY CYS LEU ARG ASP PHE SEQRES 9 A 294 LEU GLN ARG HIS ARG ALA ARG LEU ASP ALA SER ARG LEU SEQRES 10 A 294 LEU LEU TYR SER SER GLN ILE CYS LYS GLY MET GLU TYR SEQRES 11 A 294 LEU GLY SER ARG ARG CYS VAL HIS ARG ALA LEU ALA ALA SEQRES 12 A 294 ARG ASN ILE LEU VAL GLU SER GLU ALA HIS VAL LYS ILE SEQRES 13 A 294 ALA ASP PHE GLY LEU ALA LYS LEU LEU PRO LEU ASP LYS SEQRES 14 A 294 ASP TYR TYR VAL VAL ARG GLU PRO GLY GLN SER PRO ILE SEQRES 15 A 294 PHE TRP TYR ALA PRO GLU SER LEU SER ASP ASN ILE PHE SEQRES 16 A 294 SER ARG GLN SER ASP VAL TRP SER PHE GLY VAL VAL LEU SEQRES 17 A 294 TYR GLU LEU PHE THR TYR CYS ASP LYS SER CYS SER PRO SEQRES 18 A 294 SER ALA GLU PHE LEU ARG MET MET GLY SER GLU ARG ASP SEQRES 19 A 294 VAL PRO ALA LEU SER ARG LEU LEU GLU LEU LEU GLU GLU SEQRES 20 A 294 GLY GLN ARG LEU PRO ALA PRO PRO ALA CYS PRO ALA GLU SEQRES 21 A 294 VAL HIS GLU LEU MET LYS LEU CYS TRP ALA PRO SER PRO SEQRES 22 A 294 GLN ASP ARG PRO SER PHE SER ALA LEU GLY PRO GLN LEU SEQRES 23 A 294 ASP MET LEU TRP SER GLY SER ARG SEQRES 1 B 294 SER MET GLN ASP PRO THR ILE PHE GLU GLU ARG HIS LEU SEQRES 2 B 294 LYS TYR ILE SER GLN LEU GLY LYS GLY ASN PHE GLY SER SEQRES 3 B 294 VAL GLU LEU CYS ARG TYR ASP PRO LEU GLY ASP ASN THR SEQRES 4 B 294 GLY ALA LEU VAL ALA VAL LYS GLN LEU GLN HIS SER GLY SEQRES 5 B 294 PRO ASP GLN GLN ARG ASP PHE GLN ARG GLU ILE GLN ILE SEQRES 6 B 294 LEU LYS ALA LEU HIS SER ASP PHE ILE VAL LYS TYR ARG SEQRES 7 B 294 GLY VAL SER TYR GLY PRO GLY ARG GLN SER LEU ARG LEU SEQRES 8 B 294 VAL MET GLU TYR LEU PRO SER GLY CYS LEU ARG ASP PHE SEQRES 9 B 294 LEU GLN ARG HIS ARG ALA ARG LEU ASP ALA SER ARG LEU SEQRES 10 B 294 LEU LEU TYR SER SER GLN ILE CYS LYS GLY MET GLU TYR SEQRES 11 B 294 LEU GLY SER ARG ARG CYS VAL HIS ARG ALA LEU ALA ALA SEQRES 12 B 294 ARG ASN ILE LEU VAL GLU SER GLU ALA HIS VAL LYS ILE SEQRES 13 B 294 ALA ASP PHE GLY LEU ALA LYS LEU LEU PRO LEU ASP LYS SEQRES 14 B 294 ASP TYR TYR VAL VAL ARG GLU PRO GLY GLN SER PRO ILE SEQRES 15 B 294 PHE TRP TYR ALA PRO GLU SER LEU SER ASP ASN ILE PHE SEQRES 16 B 294 SER ARG GLN SER ASP VAL TRP SER PHE GLY VAL VAL LEU SEQRES 17 B 294 TYR GLU LEU PHE THR TYR CYS ASP LYS SER CYS SER PRO SEQRES 18 B 294 SER ALA GLU PHE LEU ARG MET MET GLY SER GLU ARG ASP SEQRES 19 B 294 VAL PRO ALA LEU SER ARG LEU LEU GLU LEU LEU GLU GLU SEQRES 20 B 294 GLY GLN ARG LEU PRO ALA PRO PRO ALA CYS PRO ALA GLU SEQRES 21 B 294 VAL HIS GLU LEU MET LYS LEU CYS TRP ALA PRO SER PRO SEQRES 22 B 294 GLN ASP ARG PRO SER PHE SER ALA LEU GLY PRO GLN LEU SEQRES 23 B 294 ASP MET LEU TRP SER GLY SER ARG HET F48 A1201 27 HET PHU A1202 10 HET EDO A1203 4 HET EDO A1204 4 HET EDO A1205 4 HET F48 B1201 27 HET PHU B1202 10 HET EDO B1203 4 HET EDO B1204 4 HETNAM F48 3-[5-(3-CYCLOHEXYL-3,5,8,10-TETRAZATRICYCLO[7.3.0.0^{2, HETNAM 2 F48 6}]DODECA-1(9),2(6),4,7,11-PENTAEN-4-YL)FURAN-2- HETNAM 3 F48 YL]PROPANENITRILE HETNAM PHU 1-PHENYLUREA HETNAM EDO 1,2-ETHANEDIOL HETSYN PHU PHENYLUREA HETSYN EDO ETHYLENE GLYCOL FORMUL 3 F48 2(C21 H21 N5 O) FORMUL 4 PHU 2(C7 H8 N2 O) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 12 HOH *242(H2 O) HELIX 1 AA1 GLU A 818 ARG A 820 5 3 HELIX 2 AA2 GLY A 861 LEU A 878 1 18 HELIX 3 AA3 CYS A 909 ARG A 918 1 10 HELIX 4 AA4 ALA A 919 LEU A 921 5 3 HELIX 5 AA5 ASP A 922 ARG A 943 1 22 HELIX 6 AA6 ALA A 951 ARG A 953 5 3 HELIX 7 AA7 PRO A 990 TYR A 994 5 5 HELIX 8 AA8 ALA A 995 ASN A 1002 1 8 HELIX 9 AA9 ARG A 1006 THR A 1022 1 17 HELIX 10 AB1 ASP A 1025 CYS A 1028 5 4 HELIX 11 AB2 SER A 1029 MET A 1038 1 10 HELIX 12 AB3 PRO A 1045 GLU A 1056 1 12 HELIX 13 AB4 PRO A 1067 TRP A 1078 1 12 HELIX 14 AB5 SER A 1081 ARG A 1085 5 5 HELIX 15 AB6 SER A 1087 ARG A 1103 1 17 HELIX 16 AB7 GLU B 818 ARG B 820 5 3 HELIX 17 AB8 GLY B 861 LEU B 878 1 18 HELIX 18 AB9 CYS B 909 ARG B 918 1 10 HELIX 19 AC1 ALA B 919 LEU B 921 5 3 HELIX 20 AC2 ASP B 922 ARG B 943 1 22 HELIX 21 AC3 ALA B 951 ARG B 953 5 3 HELIX 22 AC4 PRO B 990 TYR B 994 5 5 HELIX 23 AC5 ALA B 995 ASN B 1002 1 8 HELIX 24 AC6 ARG B 1006 THR B 1022 1 17 HELIX 25 AC7 ASP B 1025 CYS B 1028 5 4 HELIX 26 AC8 SER B 1029 MET B 1038 1 10 HELIX 27 AC9 PRO B 1045 GLU B 1056 1 12 HELIX 28 AD1 PRO B 1067 TRP B 1078 1 12 HELIX 29 AD2 SER B 1081 ARG B 1085 5 5 HELIX 30 AD3 SER B 1087 ARG B 1103 1 17 SHEET 1 AA1 5 LEU A 822 LYS A 830 0 SHEET 2 AA1 5 GLY A 834 TYR A 841 -1 O ARG A 840 N LYS A 823 SHEET 3 AA1 5 LEU A 851 LEU A 857 -1 O VAL A 854 N GLU A 837 SHEET 4 AA1 5 ARG A 899 GLU A 903 -1 O MET A 902 N ALA A 853 SHEET 5 AA1 5 TYR A 886 SER A 890 -1 N GLY A 888 O VAL A 901 SHEET 1 AA2 2 CYS A 945 VAL A 946 0 SHEET 2 AA2 2 LYS A 972 LEU A 973 -1 O LYS A 972 N VAL A 946 SHEET 1 AA3 2 ILE A 955 SER A 959 0 SHEET 2 AA3 2 HIS A 962 ILE A 965 -1 O LYS A 964 N LEU A 956 SHEET 1 AA4 2 TYR A 980 VAL A 982 0 SHEET 2 AA4 2 ILE A1003 SER A1005 -1 O PHE A1004 N TYR A 981 SHEET 1 AA5 5 LEU B 822 LYS B 830 0 SHEET 2 AA5 5 GLY B 834 TYR B 841 -1 O ARG B 840 N LYS B 823 SHEET 3 AA5 5 LEU B 851 LEU B 857 -1 O VAL B 854 N GLU B 837 SHEET 4 AA5 5 ARG B 899 MET B 902 -1 O MET B 902 N ALA B 853 SHEET 5 AA5 5 TYR B 886 SER B 890 -1 N SER B 890 O ARG B 899 SHEET 1 AA6 2 CYS B 945 VAL B 946 0 SHEET 2 AA6 2 LYS B 972 LEU B 973 -1 O LYS B 972 N VAL B 946 SHEET 1 AA7 2 ILE B 955 SER B 959 0 SHEET 2 AA7 2 HIS B 962 ILE B 965 -1 O LYS B 964 N LEU B 956 SHEET 1 AA8 2 TYR B 980 VAL B 982 0 SHEET 2 AA8 2 ILE B1003 SER B1005 -1 O PHE B1004 N TYR B 981 SITE 1 AC1 10 LEU A 828 VAL A 836 ALA A 853 GLU A 903 SITE 2 AC1 10 TYR A 904 LEU A 905 ARG A 953 ASN A 954 SITE 3 AC1 10 LEU A 956 HOH A1301 SITE 1 AC2 7 TRP A1011 PRO A1030 MET A1037 ARG A1059 SITE 2 AC2 7 LEU A1060 TRP A1078 HOH A1333 SITE 1 AC3 4 LYS A 823 ARG A 840 ASN A 847 PRO B1093 SITE 1 AC4 6 LEU A 875 LYS A 876 LEU A 878 HIS A 879 SITE 2 AC4 6 LYS A 885 TYR A 886 SITE 1 AC5 2 GLN A1058 ARG A1059 SITE 1 AC6 9 LEU B 828 VAL B 836 ALA B 853 GLU B 903 SITE 2 AC6 9 TYR B 904 LEU B 905 ARG B 953 ASN B 954 SITE 3 AC6 9 LEU B 956 SITE 1 AC7 7 PHE B 992 TRP B1011 MET B1037 ARG B1059 SITE 2 AC7 7 LEU B1060 TRP B1078 HOH B1324 SITE 1 AC8 5 LYS B 823 ILE B 825 ARG B 840 ASN B 847 SITE 2 AC8 5 ARG B 984 SITE 1 AC9 6 ARG B 920 PRO B 996 LEU B1054 GLU B1055 SITE 2 AC9 6 ARG B1059 PRO B1080 CRYST1 41.849 50.309 61.588 91.74 90.28 92.76 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023896 0.001152 0.000152 0.00000 SCALE2 0.000000 0.019900 0.000610 0.00000 SCALE3 0.000000 0.000000 0.016245 0.00000