HEADER HYDROLASE 23-MAY-18 6GLL TITLE CRYSTAL STRUCTURE OF HMTH1 N33A IN COMPLEX WITH LW14 IN THE PRESENCE TITLE 2 OF ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, HYDROLASE, DNA REPAIR, FRAGMENT EXPDTA X-RAY DIFFRACTION AUTHOR S.A.EBERLE,L.WIEDMER,P.SLEDZ,A.CAFLISCH REVDAT 1 20-FEB-19 6GLL 0 JRNL AUTH S.A.EBERLE,L.WIEDMER,P.SLEDZ,A.CAFLISCH JRNL TITL HMTH1 N33A IN COMPLEX WITH LW14 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 54629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5578 - 3.3618 0.96 3898 149 0.1639 0.1636 REMARK 3 2 3.3618 - 2.6684 0.98 3810 141 0.1786 0.1928 REMARK 3 3 2.6684 - 2.3311 0.99 3830 143 0.1916 0.2176 REMARK 3 4 2.3311 - 2.1180 0.99 3758 145 0.1790 0.1781 REMARK 3 5 2.1180 - 1.9662 0.99 3770 146 0.1802 0.2002 REMARK 3 6 1.9662 - 1.8503 0.99 3713 140 0.1743 0.2050 REMARK 3 7 1.8503 - 1.7576 0.99 3750 143 0.1880 0.2082 REMARK 3 8 1.7576 - 1.6811 0.99 3756 147 0.1982 0.2058 REMARK 3 9 1.6811 - 1.6164 1.00 3758 138 0.1991 0.2155 REMARK 3 10 1.6164 - 1.5606 0.99 3742 151 0.1985 0.2138 REMARK 3 11 1.5606 - 1.5118 0.99 3728 139 0.2032 0.2769 REMARK 3 12 1.5118 - 1.4686 1.00 3742 134 0.2014 0.2320 REMARK 3 13 1.4686 - 1.4299 0.99 3702 148 0.2228 0.2535 REMARK 3 14 1.4299 - 1.3950 0.98 3663 145 0.2457 0.2675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.111 2665 REMARK 3 ANGLE : 2.054 3619 REMARK 3 CHIRALITY : 0.257 374 REMARK 3 PLANARITY : 0.008 470 REMARK 3 DIHEDRAL : 15.662 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 1.920 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED IN: 23-27% PEG3350, 0.2 M REMARK 280 LISO4, 0.1 M SODIUM ACETATE PH 4.5 SOAKED IN: 27% PEG3350, 0.2 M REMARK 280 LISO4, 0.1 M SODIUM ACETATE PH 4.5, 20% DMSO, 10 MM COMPOUND, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.95350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.22100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.84700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.22100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.95350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.84700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 MET B -25 REMARK 465 LYS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 PRO B -17 REMARK 465 MET B -16 REMARK 465 SER B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 LYS A 23 CE NZ REMARK 470 ARG A 25 CD NE CZ NH1 NH2 REMARK 470 PHE A 27 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 62 CB CG OD1 OD2 REMARK 470 ALA A 63 CB REMARK 470 LYS A 66 CE NZ REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 114 CE NZ REMARK 470 GLN A 142 CD OE1 NE2 REMARK 470 THR A 155 CB OG1 CG2 REMARK 470 VAL A 156 C O REMARK 470 GLY B -1 N CA REMARK 470 PHE B 27 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 46 OE1 OE2 REMARK 470 ARG B 50 NH1 NH2 REMARK 470 THR B 60 O REMARK 470 ASP B 62 CB CG OD1 OD2 REMARK 470 LYS B 66 CD CE NZ REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 130 CD CE NZ REMARK 470 LYS B 132 CE NZ REMARK 470 GLN B 142 CD OE1 NE2 REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 THR B 155 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 309 O HOH B 383 1.90 REMARK 500 O HOH A 459 O HOH A 515 1.97 REMARK 500 O HOH A 344 O HOH A 443 1.99 REMARK 500 O THR B 88 O HOH B 301 2.01 REMARK 500 O HOH B 417 O HOH B 448 2.04 REMARK 500 O HOH A 452 O HOH B 469 2.06 REMARK 500 O HOH B 363 O HOH B 462 2.09 REMARK 500 O HOH A 343 O HOH A 471 2.09 REMARK 500 OE2 GLU B 79 O HOH B 302 2.10 REMARK 500 OE1 GLU A 152 O HOH A 301 2.16 REMARK 500 O HOH B 371 O HOH B 479 2.17 REMARK 500 O HOH B 429 O HOH B 450 2.17 REMARK 500 O ALA A 0 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 471 O HOH B 339 3644 2.08 REMARK 500 O HOH A 372 O HOH A 485 3544 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 89 CB ASP B 89 CG 5.371 REMARK 500 SER B 90 CA SER B 90 CB 2.017 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 89 CA - CB - CG ANGL. DEV. = -91.1 DEGREES REMARK 500 ASP B 89 CB - CG - OD1 ANGL. DEV. = -9.7 DEGREES REMARK 500 SER B 90 CB - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 SER B 90 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 SER B 90 CA - CB - OG ANGL. DEV. = 28.2 DEGREES REMARK 500 SER B 90 CA - CB - OG ANGL. DEV. = 53.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 -107.24 -83.23 REMARK 500 ASP B 89 -67.81 -107.11 REMARK 500 SER B 90 -156.97 -136.77 REMARK 500 ILE B 91 169.92 168.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 89 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU8 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU8 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 205 DBREF 6GLL A 1 156 UNP P36639 8ODP_HUMAN 16 171 DBREF 6GLL B 1 156 UNP P36639 8ODP_HUMAN 16 171 SEQADV 6GLL MET A -25 UNP P36639 INITIATING METHIONINE SEQADV 6GLL LYS A -24 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS A -23 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS A -22 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS A -21 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS A -20 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS A -19 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS A -18 UNP P36639 EXPRESSION TAG SEQADV 6GLL PRO A -17 UNP P36639 EXPRESSION TAG SEQADV 6GLL MET A -16 UNP P36639 EXPRESSION TAG SEQADV 6GLL SER A -15 UNP P36639 EXPRESSION TAG SEQADV 6GLL ASP A -14 UNP P36639 EXPRESSION TAG SEQADV 6GLL TYR A -13 UNP P36639 EXPRESSION TAG SEQADV 6GLL ASP A -12 UNP P36639 EXPRESSION TAG SEQADV 6GLL ILE A -11 UNP P36639 EXPRESSION TAG SEQADV 6GLL PRO A -10 UNP P36639 EXPRESSION TAG SEQADV 6GLL THR A -9 UNP P36639 EXPRESSION TAG SEQADV 6GLL THR A -8 UNP P36639 EXPRESSION TAG SEQADV 6GLL GLU A -7 UNP P36639 EXPRESSION TAG SEQADV 6GLL ASN A -6 UNP P36639 EXPRESSION TAG SEQADV 6GLL LEU A -5 UNP P36639 EXPRESSION TAG SEQADV 6GLL TYR A -4 UNP P36639 EXPRESSION TAG SEQADV 6GLL PHE A -3 UNP P36639 EXPRESSION TAG SEQADV 6GLL GLN A -2 UNP P36639 EXPRESSION TAG SEQADV 6GLL GLY A -1 UNP P36639 EXPRESSION TAG SEQADV 6GLL ALA A 0 UNP P36639 EXPRESSION TAG SEQADV 6GLL ALA A 33 UNP P36639 ASN 48 ENGINEERED MUTATION SEQADV 6GLL MET B -25 UNP P36639 INITIATING METHIONINE SEQADV 6GLL LYS B -24 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS B -23 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS B -22 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS B -21 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS B -20 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS B -19 UNP P36639 EXPRESSION TAG SEQADV 6GLL HIS B -18 UNP P36639 EXPRESSION TAG SEQADV 6GLL PRO B -17 UNP P36639 EXPRESSION TAG SEQADV 6GLL MET B -16 UNP P36639 EXPRESSION TAG SEQADV 6GLL SER B -15 UNP P36639 EXPRESSION TAG SEQADV 6GLL ASP B -14 UNP P36639 EXPRESSION TAG SEQADV 6GLL TYR B -13 UNP P36639 EXPRESSION TAG SEQADV 6GLL ASP B -12 UNP P36639 EXPRESSION TAG SEQADV 6GLL ILE B -11 UNP P36639 EXPRESSION TAG SEQADV 6GLL PRO B -10 UNP P36639 EXPRESSION TAG SEQADV 6GLL THR B -9 UNP P36639 EXPRESSION TAG SEQADV 6GLL THR B -8 UNP P36639 EXPRESSION TAG SEQADV 6GLL GLU B -7 UNP P36639 EXPRESSION TAG SEQADV 6GLL ASN B -6 UNP P36639 EXPRESSION TAG SEQADV 6GLL LEU B -5 UNP P36639 EXPRESSION TAG SEQADV 6GLL TYR B -4 UNP P36639 EXPRESSION TAG SEQADV 6GLL PHE B -3 UNP P36639 EXPRESSION TAG SEQADV 6GLL GLN B -2 UNP P36639 EXPRESSION TAG SEQADV 6GLL GLY B -1 UNP P36639 EXPRESSION TAG SEQADV 6GLL ALA B 0 UNP P36639 EXPRESSION TAG SEQADV 6GLL ALA B 33 UNP P36639 ASN 48 ENGINEERED MUTATION SEQRES 1 A 182 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 182 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 182 MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 4 A 182 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 5 A 182 PHE GLY ALA GLY ARG TRP ALA GLY PHE GLY GLY LYS VAL SEQRES 6 A 182 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 7 A 182 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 8 A 182 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 9 A 182 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 10 A 182 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 11 A 182 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 12 A 182 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 13 A 182 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 14 A 182 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL SEQRES 1 B 182 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 B 182 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 B 182 MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 4 B 182 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 5 B 182 PHE GLY ALA GLY ARG TRP ALA GLY PHE GLY GLY LYS VAL SEQRES 6 B 182 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 7 B 182 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 8 B 182 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 9 B 182 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 10 B 182 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 11 B 182 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 12 B 182 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 13 B 182 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 14 B 182 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL HET BU8 A 201 10 HET SO4 A 202 5 HET ACT A 203 7 HET BU8 B 201 10 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET ACT B 205 7 HETNAM BU8 1~{H}-IMIDAZO[4,5-B]PYRIDIN-2-AMINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 3 BU8 2(C6 H6 N4) FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *410(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 PRO A 112 MET A 116 5 5 HELIX 3 AA3 TRP A 117 PRO A 118 5 2 HELIX 4 AA4 ASP A 119 GLN A 129 1 11 HELIX 5 AA5 THR B 44 GLY B 58 1 15 HELIX 6 AA6 PRO B 112 MET B 116 5 5 HELIX 7 AA7 TRP B 117 PRO B 118 5 2 HELIX 8 AA8 ASP B 119 GLN B 129 1 11 SHEET 1 AA1 4 TRP A 32 ALA A 33 0 SHEET 2 AA1 4 ARG A 17 LYS A 23 -1 N GLY A 21 O ALA A 33 SHEET 3 AA1 4 SER A 4 LEU A 13 -1 N VAL A 12 O LEU A 19 SHEET 4 AA1 4 MET A 101 GLN A 107 0 SHEET 1 AA2 7 PHE A 35 LYS A 38 0 SHEET 2 AA2 7 SER A 4 LEU A 13 -1 N VAL A 10 O PHE A 35 SHEET 3 AA2 7 ARG A 17 LYS A 23 -1 O LEU A 19 N VAL A 12 SHEET 4 AA2 7 GLU A 77 THR A 88 0 SHEET 5 AA2 7 HIS A 65 PHE A 74 -1 N ILE A 70 O VAL A 83 SHEET 6 AA2 7 LYS A 132 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 AA2 7 THR A 144 VAL A 153 -1 O ASP A 147 N LYS A 138 SHEET 1 AA3 2 THR A 60 VAL A 61 0 SHEET 2 AA3 2 ILE A 91 GLN A 92 -1 O GLN A 92 N THR A 60 SHEET 1 AA4 4 TRP B 32 ALA B 33 0 SHEET 2 AA4 4 ARG B 17 LYS B 23 -1 N GLY B 21 O ALA B 33 SHEET 3 AA4 4 SER B 4 LEU B 13 -1 N VAL B 12 O LEU B 19 SHEET 4 AA4 4 MET B 101 GLN B 107 0 SHEET 1 AA5 7 PHE B 35 LYS B 38 0 SHEET 2 AA5 7 SER B 4 LEU B 13 -1 N VAL B 10 O PHE B 35 SHEET 3 AA5 7 ARG B 17 LYS B 23 -1 O LEU B 19 N VAL B 12 SHEET 4 AA5 7 LEU B 80 THR B 88 0 SHEET 5 AA5 7 HIS B 65 PHE B 74 -1 N ILE B 70 O VAL B 83 SHEET 6 AA5 7 PHE B 133 GLN B 140 1 O PHE B 139 N GLU B 73 SHEET 7 AA5 7 THR B 144 GLU B 152 -1 O ASP B 147 N LYS B 138 SITE 1 AC1 8 PHE A 72 PHE A 74 TRP A 117 ASP A 119 SITE 2 AC1 8 ASP A 120 ACT A 203 HOH A 350 HOH A 365 SITE 1 AC2 6 HIS A 134 ARG A 151 HOH A 363 HOH A 393 SITE 2 AC2 6 THR B 44 ILE B 45 SITE 1 AC3 8 LEU A 9 ALA A 33 GLY A 34 ASP A 120 SITE 2 AC3 8 TRP A 123 BU8 A 201 HOH A 329 HOH A 365 SITE 1 AC4 8 PHE B 72 PHE B 74 MET B 81 TRP B 117 SITE 2 AC4 8 ASP B 119 ASP B 120 ACT B 205 HOH B 336 SITE 1 AC5 8 THR A 44 ILE A 45 HIS B 134 ARG B 151 SITE 2 AC5 8 HOH B 308 HOH B 310 HOH B 397 HOH B 411 SITE 1 AC6 6 LYS A 130 LYS B 23 GLY B 26 PHE B 27 SITE 2 AC6 6 HOH B 329 HOH B 334 SITE 1 AC7 5 ARG B 151 ASP B 154 THR B 155 HOH B 327 SITE 2 AC7 5 HOH B 343 SITE 1 AC8 7 LEU B 9 ALA B 33 GLY B 34 ASP B 120 SITE 2 AC8 7 TRP B 123 BU8 B 201 HOH B 336 CRYST1 45.907 47.694 124.442 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008036 0.00000