HEADER OXIDOREDUCTASE 24-MAY-18 6GMC TITLE 1.2 A RESOLUTION STRUCTURE OF HUMAN HYDROXYACID OXIDASE 1 BOUND WITH TITLE 2 FMN AND 4-CARBOXY-5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1,GLYCOLATE OXIDASE,GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1, GOX1, HAOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLATE, GLYOXYLATE, PEROXISOME, FMN, PRIMARY HYPEROXALURIA, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MACKINNON,G.A.BEZERRA,T.KROJER,C.SMEE,C.H.ARROWSMITH,E.EDWARDS, AUTHOR 2 C.BOUNTRA,U.OPPERMANN,P.E.BRENNAN,W.W.YUE REVDAT 3 17-JAN-24 6GMC 1 REMARK REVDAT 2 27-JUN-18 6GMC 1 LINK ATOM REVDAT 1 13-JUN-18 6GMC 0 JRNL AUTH S.MACKINNON,G.A.BEZERRA,T.KROJER,C.SMEE,C.H.ARROWSMITH, JRNL AUTH 2 E.EDWARDS,C.BOUNTRA,U.OPPERMANN,P.E.BRENNAN,W.W.YUE JRNL TITL STRUCTURE OF HUMAN HYDROXYACID OXIDASE 1 BOUND WITH FMN AND JRNL TITL 2 GLYCOLATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 110271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 397 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3047 ; 0.007 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2815 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4155 ; 1.376 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6594 ; 1.015 ; 1.652 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.665 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;29.866 ;21.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;11.812 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.736 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3460 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 549 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5862 ; 0.975 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 198 ;21.469 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5894 ;11.217 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 68.835 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : 0.68800 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2NZL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350 -- 10% ETHYLENE GLYCOL -- REMARK 280 0.1M BIS-TRIS-PROPANE PH 7.5 -- 0.2M SODIUM ACETATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.67400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.67400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.18150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.67400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.67400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.18150 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.67400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.67400 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.18150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.67400 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.67400 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.18150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 ASN A 363 REMARK 465 PRO A 364 REMARK 465 LEU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 SER A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 4 NE CZ NH1 NH2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 142 CE NZ REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 SER A 189 OG REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ASP A 202 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 815 O HOH A 833 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -127.86 55.39 REMARK 500 ASN A 56 95.51 70.65 REMARK 500 PRO A 74 43.01 -84.24 REMARK 500 TRP A 110 46.33 -101.54 REMARK 500 ASP A 202 -135.82 -106.57 REMARK 500 GLN A 264 -102.55 -109.46 REMARK 500 GLN A 324 46.25 -164.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 108 SER A 109 141.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 28 0.10 SIDE CHAIN REMARK 500 ARG A 263 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 896 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 897 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 898 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 899 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 900 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 901 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 902 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 903 DISTANCE = 6.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C7C A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NZL RELATED DB: PDB REMARK 900 RELATED ID: 6GMB RELATED DB: PDB DBREF 6GMC A 1 362 UNP Q9UJM8 HAOX1_HUMAN 1 362 SEQADV 6GMC ASN A 363 UNP Q9UJM8 EXPRESSION TAG SEQADV 6GMC PRO A 364 UNP Q9UJM8 EXPRESSION TAG SEQADV 6GMC LEU A 365 UNP Q9UJM8 EXPRESSION TAG SEQADV 6GMC ALA A 366 UNP Q9UJM8 EXPRESSION TAG SEQADV 6GMC VAL A 367 UNP Q9UJM8 EXPRESSION TAG SEQADV 6GMC SER A 368 UNP Q9UJM8 EXPRESSION TAG SEQRES 1 A 368 MET LEU PRO ARG LEU ILE CYS ILE ASN ASP TYR GLU GLN SEQRES 2 A 368 HIS ALA LYS SER VAL LEU PRO LYS SER ILE TYR ASP TYR SEQRES 3 A 368 TYR ARG SER GLY ALA ASN ASP GLU GLU THR LEU ALA ASP SEQRES 4 A 368 ASN ILE ALA ALA PHE SER ARG TRP LYS LEU TYR PRO ARG SEQRES 5 A 368 MET LEU ARG ASN VAL ALA GLU THR ASP LEU SER THR SER SEQRES 6 A 368 VAL LEU GLY GLN ARG VAL SER MET PRO ILE CYS VAL GLY SEQRES 7 A 368 ALA THR ALA MET GLN ARG MET ALA HIS VAL ASP GLY GLU SEQRES 8 A 368 LEU ALA THR VAL ARG ALA CYS GLN SER LEU GLY THR GLY SEQRES 9 A 368 MET MET LEU SER SER TRP ALA THR SER SER ILE GLU GLU SEQRES 10 A 368 VAL ALA GLU ALA GLY PRO GLU ALA LEU ARG TRP LEU GLN SEQRES 11 A 368 LEU TYR ILE TYR LYS ASP ARG GLU VAL THR LYS LYS LEU SEQRES 12 A 368 VAL ARG GLN ALA GLU LYS MET GLY TYR LYS ALA ILE PHE SEQRES 13 A 368 VAL THR VAL ASP THR PRO TYR LEU GLY ASN ARG LEU ASP SEQRES 14 A 368 ASP VAL ARG ASN ARG PHE LYS LEU PRO PRO GLN LEU ARG SEQRES 15 A 368 MET LYS ASN PHE GLU THR SER THR LEU SER PHE SER PRO SEQRES 16 A 368 GLU GLU ASN PHE GLY ASP ASP SER GLY LEU ALA ALA TYR SEQRES 17 A 368 VAL ALA LYS ALA ILE ASP PRO SER ILE SER TRP GLU ASP SEQRES 18 A 368 ILE LYS TRP LEU ARG ARG LEU THR SER LEU PRO ILE VAL SEQRES 19 A 368 ALA LYS GLY ILE LEU ARG GLY ASP ASP ALA ARG GLU ALA SEQRES 20 A 368 VAL LYS HIS GLY LEU ASN GLY ILE LEU VAL SER ASN HIS SEQRES 21 A 368 GLY ALA ARG GLN LEU ASP GLY VAL PRO ALA THR ILE ASP SEQRES 22 A 368 VAL LEU PRO GLU ILE VAL GLU ALA VAL GLU GLY LYS VAL SEQRES 23 A 368 GLU VAL PHE LEU ASP GLY GLY VAL ARG LYS GLY THR ASP SEQRES 24 A 368 VAL LEU LYS ALA LEU ALA LEU GLY ALA LYS ALA VAL PHE SEQRES 25 A 368 VAL GLY ARG PRO ILE VAL TRP GLY LEU ALA PHE GLN GLY SEQRES 26 A 368 GLU LYS GLY VAL GLN ASP VAL LEU GLU ILE LEU LYS GLU SEQRES 27 A 368 GLU PHE ARG LEU ALA MET ALA LEU SER GLY CYS GLN ASN SEQRES 28 A 368 VAL LYS VAL ILE ASP LYS THR LEU VAL ARG LYS ASN PRO SEQRES 29 A 368 LEU ALA VAL SER HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET FMN A 505 31 HET C7C A 506 16 HETNAM EDO 1,2-ETHANEDIOL HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM C7C 5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4- HETNAM 2 C7C CARBOXYLATE HETSYN EDO ETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 FMN C17 H21 N4 O9 P FORMUL 7 C7C C9 H4 CL N2 O2 S2 1- FORMUL 8 HOH *303(H2 O) HELIX 1 AA1 CYS A 7 LEU A 19 1 13 HELIX 2 AA2 PRO A 20 SER A 29 1 10 HELIX 3 AA3 GLU A 34 TRP A 47 1 14 HELIX 4 AA4 MET A 82 ALA A 86 5 5 HELIX 5 AA5 ASP A 89 GLY A 102 1 14 HELIX 6 AA6 SER A 114 GLY A 122 1 9 HELIX 7 AA7 ASP A 136 MET A 150 1 15 HELIX 8 AA8 ARG A 167 ARG A 174 1 8 HELIX 9 AA9 SER A 203 ILE A 213 1 11 HELIX 10 AB1 SER A 218 THR A 229 1 12 HELIX 11 AB2 ARG A 240 HIS A 250 1 11 HELIX 12 AB3 ASN A 259 ARG A 263 5 5 HELIX 13 AB4 ALA A 270 GLU A 283 1 14 HELIX 14 AB5 LYS A 296 LEU A 306 1 11 HELIX 15 AB6 GLY A 314 GLY A 348 1 35 HELIX 16 AB7 ASN A 351 ILE A 355 5 5 HELIX 17 AB8 ASP A 356 THR A 358 5 3 SHEET 1 AA1 2 LYS A 48 LEU A 49 0 SHEET 2 AA1 2 VAL A 360 ARG A 361 -1 O ARG A 361 N LYS A 48 SHEET 1 AA2 2 THR A 64 VAL A 66 0 SHEET 2 AA2 2 GLN A 69 VAL A 71 -1 O VAL A 71 N THR A 64 SHEET 1 AA3 9 ILE A 75 VAL A 77 0 SHEET 2 AA3 9 GLY A 104 LEU A 107 1 O GLY A 104 N VAL A 77 SHEET 3 AA3 9 LEU A 126 LEU A 131 1 O GLN A 130 N LEU A 107 SHEET 4 AA3 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 129 SHEET 5 AA3 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 AA3 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 AA3 9 GLU A 287 ASP A 291 1 O PHE A 289 N ILE A 255 SHEET 8 AA3 9 ALA A 310 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 AA3 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 SITE 1 AC1 8 ARG A 52 MET A 53 LEU A 54 ARG A 55 SITE 2 AC1 8 VAL A 159 ALA A 345 GLY A 348 HOH A 753 SITE 1 AC2 9 GLY A 284 LYS A 285 VAL A 286 GLU A 287 SITE 2 AC2 9 PHE A 323 GLN A 324 LYS A 327 HOH A 833 SITE 3 AC2 9 HOH A 841 SITE 1 AC3 5 ARG A 28 LEU A 37 HOH A 618 HOH A 649 SITE 2 AC3 5 HOH A 665 SITE 1 AC4 7 CYS A 7 ASN A 32 ASP A 33 LEU A 168 SITE 2 AC4 7 LYS A 296 GLU A 339 HOH A 818 SITE 1 AC5 26 TYR A 26 TYR A 27 ALA A 79 THR A 80 SITE 2 AC5 26 ALA A 81 SER A 108 SER A 109 TRP A 110 SITE 3 AC5 26 GLN A 130 TYR A 132 THR A 158 LYS A 236 SITE 4 AC5 26 SER A 258 HIS A 260 GLY A 261 ARG A 263 SITE 5 AC5 26 ASP A 291 GLY A 292 GLY A 293 ARG A 295 SITE 6 AC5 26 GLY A 314 ARG A 315 C7C A 506 HOH A 632 SITE 7 AC5 26 HOH A 719 HOH A 730 SITE 1 AC6 12 TYR A 26 MET A 82 TRP A 110 TYR A 132 SITE 2 AC6 12 ARG A 167 MET A 183 PHE A 193 LEU A 205 SITE 3 AC6 12 TYR A 208 HIS A 260 ARG A 263 FMN A 505 CRYST1 97.348 97.348 80.363 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012444 0.00000