HEADER OXIDOREDUCTASE 25-MAY-18 6GMF TITLE STRUCTURE OF CYTOCHROME P450 CYP109Q5 FROM CHONDROMYCES APICULATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CYTOCHROME P450 HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHONDROMYCES APICULATUS DSM 436; SOURCE 3 ORGANISM_TAXID: 1192034; SOURCE 4 GENE: CAP_4855; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS P450, TERPENE, OXIDOREDUCTASE, BIOCATALYSIS EXPDTA X-RAY DIFFRACTION AUTHOR G.GROGAN,P.DUBIEL,M.SHARMA,J.KLENK,B.HAUER REVDAT 2 17-JAN-24 6GMF 1 REMARK REVDAT 1 27-MAR-19 6GMF 0 JRNL AUTH J.M.KLENK,P.DUBIEL,M.SHARMA,G.GROGAN,B.HAUER JRNL TITL CHARACTERIZATION AND STRUCTURE-GUIDED ENGINEERING OF THE JRNL TITL 2 NOVEL VERSATILE TERPENE MONOOXYGENASE CYP109Q5 FROM JRNL TITL 3 CHONDROMYCES APICULATUS DSM436. JRNL REF MICROB BIOTECHNOL V. 12 377 2019 JRNL REFN ISSN 1751-7915 JRNL PMID 30592153 JRNL DOI 10.1111/1751-7915.13354 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 49666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.76000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.217 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3063 ; 0.012 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2757 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4194 ; 1.589 ; 1.681 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6436 ; 1.076 ; 1.636 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;25.073 ;20.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;14.452 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3500 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1552 ; 1.980 ; 2.470 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1551 ; 1.971 ; 2.467 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1939 ; 2.735 ; 3.700 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1940 ; 2.735 ; 3.704 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1511 ; 2.659 ; 2.622 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1509 ; 2.661 ; 2.623 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2250 ; 3.804 ; 3.846 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3592 ; 4.942 ;29.992 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3545 ; 4.899 ;29.735 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 55.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5OFQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 28% (W/V) PEG REMARK 280 3350, 0.1 M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.51000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 LEU A 167 REMARK 465 ALA A 168 REMARK 465 LEU A 169 REMARK 465 VAL A 170 REMARK 465 ARG A 171 REMARK 465 VAL A 172 REMARK 465 GLY A 173 REMARK 465 ASN A 174 REMARK 465 ALA A 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ARG A 25 NE CZ NH1 NH2 REMARK 470 LYS A 54 CE NZ REMARK 470 ARG A 59 NE CZ NH1 NH2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 69 CG1 CG2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 89 CD CE NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 VAL A 164 CG1 CG2 REMARK 470 GLN A 183 CD OE1 NE2 REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ARG A 198 NE CZ NH1 NH2 REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 ARG A 201 CD NE CZ NH1 NH2 REMARK 470 GLU A 202 CD OE1 OE2 REMARK 470 GLN A 207 CD OE1 NE2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 SER A 375 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 THR A 393 O HOH A 658 2546 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 45.93 -147.52 REMARK 500 ASP A 72 101.12 -54.04 REMARK 500 VAL A 133 -61.87 -138.12 REMARK 500 ARG A 201 -165.67 -127.65 REMARK 500 ASP A 339 -136.85 70.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 86 0.08 SIDE CHAIN REMARK 500 ARG A 369 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 343 SG REMARK 620 2 HEM A 501 NA 99.5 REMARK 620 3 HEM A 501 NB 87.0 88.2 REMARK 620 4 HEM A 501 NC 86.5 173.9 90.9 REMARK 620 5 HEM A 501 ND 99.3 92.1 173.6 88.1 REMARK 620 6 HOH A 673 O 173.1 83.4 86.8 90.5 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 DBREF1 6GMF A 1 397 UNP A0A017T5A5_9DELT DBREF2 6GMF A A0A017T5A5 1 397 SEQRES 1 A 397 MET ILE ALA ASP ILE ASP ILE THR ALA PRO GLU VAL LEU SEQRES 2 A 397 ARG ASN PRO TYR ALA LEU PHE ALA GLU LEU ARG ARG THR SEQRES 3 A 397 SER ALA VAL GLY ARG LEU GLN PRO GLN GLY PHE MET ALA SEQRES 4 A 397 VAL GLY ARG TYR GLN ASP VAL ALA ARG VAL LEU HIS ASP SEQRES 5 A 397 ALA LYS GLY PHE SER ASN ARG GLY TRP ALA ALA SER LEU SEQRES 6 A 397 PRO ARG GLY VAL LYS TRP ASP THR SER MET PRO PRO SER SEQRES 7 A 397 ILE VAL GLN VAL ASP PRO PRO ARG HIS GLY LYS LEU ARG SEQRES 8 A 397 THR LEU VAL THR LYS ALA PHE THR PRO ARG THR VAL ALA SEQRES 9 A 397 GLN LEU GLU PRO ARG ILE ARG ASP ILE ALA HIS GLU LEU SEQRES 10 A 397 VAL ASP GLY LEU ARG GLY LYS SER THR PHE GLU ALA THR SEQRES 11 A 397 VAL GLU VAL THR VAL PRO MET PRO MET ILE VAL ILE ALA SEQRES 12 A 397 GLU MET LEU GLY VAL ALA PRO GLU ARG ARG ALA ASP PHE SEQRES 13 A 397 LYS ARG TRP SER ASP ASP MET VAL GLY SER LEU ALA LEU SEQRES 14 A 397 VAL ARG VAL GLY ASN ALA ALA GLN LEU GLU ARG SER THR SEQRES 15 A 397 GLN GLU PHE TYR ALA TYR PHE SER GLU VAL LEU GLU GLU SEQRES 16 A 397 ARG ARG ARG GLU PRO ARG GLU ASP LEU ILE SER GLN LEU SEQRES 17 A 397 LEU ALA ALA GLU VAL ASP GLY GLU LYS LEU THR ALA GLY SEQRES 18 A 397 GLU VAL LEU SER PHE ALA ASN THR LEU LEU ILE ALA GLY SEQRES 19 A 397 ASN GLU THR THR THR SER LEU ILE GLY ASN ALA LEU VAL SEQRES 20 A 397 ALA LEU THR ASP HIS PRO GLU GLN LEU ALA ALA ALA GLN SEQRES 21 A 397 ALA ASP LEU SER LEU VAL PRO ALA VAL VAL GLU GLU VAL SEQRES 22 A 397 LEU ARG TYR GLU SER PRO ALA GLN CYS ILE PHE ARG GLN SEQRES 23 A 397 THR MET THR ASP VAL GLU ILE GLY ASP GLU ARG ILE PRO SEQRES 24 A 397 ALA ARG SER VAL VAL LEU PRO LEU LEU ALA SER ALA ASN SEQRES 25 A 397 ARG ASP GLU SER ARG PHE PRO ASP PRO ASP ARG PHE ASP SEQRES 26 A 397 ILE HIS ARG ASP THR LYS GLY HIS LEU ALA PHE GLY LEU SEQRES 27 A 397 ASP ILE HIS PHE CYS ILE GLY ALA PRO LEU ALA ARG LEU SEQRES 28 A 397 GLU ALA LYS VAL MET LEU GLU VAL LEU LEU ALA ARG LEU SEQRES 29 A 397 GLY ASP ILE GLN ARG VAL SER GLN GLU VAL SER TRP SER SEQRES 30 A 397 PRO SER PHE PHE ILE ARG SER PRO SER THR LEU PRO LEU SEQRES 31 A 397 ARG ALA THR VAL ALA SER ALA HET HEM A 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *253(H2 O) HELIX 1 AA1 ALA A 9 ASN A 15 1 7 HELIX 2 AA2 ASN A 15 SER A 27 1 13 HELIX 3 AA3 ARG A 42 ASP A 52 1 11 HELIX 4 AA4 ASN A 58 LEU A 65 5 8 HELIX 5 AA5 SER A 78 VAL A 82 5 5 HELIX 6 AA6 PRO A 85 THR A 95 1 11 HELIX 7 AA7 THR A 99 LEU A 106 1 8 HELIX 8 AA8 LEU A 106 GLY A 120 1 15 HELIX 9 AA9 ALA A 129 VAL A 133 1 5 HELIX 10 AB1 VAL A 135 LEU A 146 1 12 HELIX 11 AB2 ALA A 149 GLU A 151 5 3 HELIX 12 AB3 ARG A 152 VAL A 164 1 13 HELIX 13 AB4 GLN A 177 GLU A 199 1 23 HELIX 14 AB5 ASP A 203 ALA A 211 1 9 HELIX 15 AB6 THR A 219 HIS A 252 1 34 HELIX 16 AB7 HIS A 252 ASP A 262 1 11 HELIX 17 AB8 LEU A 265 GLU A 277 1 13 HELIX 18 AB9 LEU A 307 ARG A 313 1 7 HELIX 19 AC1 LEU A 338 PHE A 342 5 5 HELIX 20 AC2 GLY A 345 LEU A 364 1 20 SHEET 1 AA1 5 VAL A 29 ARG A 31 0 SHEET 2 AA1 5 MET A 38 VAL A 40 -1 O ALA A 39 N GLY A 30 SHEET 3 AA1 5 VAL A 303 PRO A 306 1 O LEU A 305 N MET A 38 SHEET 4 AA1 5 ARG A 285 THR A 287 -1 N ARG A 285 O VAL A 304 SHEET 5 AA1 5 PHE A 56 SER A 57 -1 N SER A 57 O GLN A 286 SHEET 1 AA2 3 THR A 126 GLU A 128 0 SHEET 2 AA2 3 PRO A 389 ARG A 391 -1 O LEU A 390 N PHE A 127 SHEET 3 AA2 3 GLN A 368 ARG A 369 -1 N GLN A 368 O ARG A 391 SHEET 1 AA3 2 GLU A 212 VAL A 213 0 SHEET 2 AA3 2 GLU A 216 LYS A 217 -1 O GLU A 216 N VAL A 213 SHEET 1 AA4 2 VAL A 291 ILE A 293 0 SHEET 2 AA4 2 GLU A 296 ILE A 298 -1 O GLU A 296 N ILE A 293 LINK SG CYS A 343 FE HEM A 501 1555 1555 2.27 LINK FE HEM A 501 O HOH A 673 1555 1555 2.24 CISPEP 1 GLN A 33 PRO A 34 0 3.39 CISPEP 2 PRO A 84 PRO A 85 0 6.28 SITE 1 AC1 23 ASN A 58 TRP A 61 ILE A 79 VAL A 80 SITE 2 AC1 23 HIS A 87 ARG A 91 LEU A 230 ALA A 233 SITE 3 AC1 23 GLY A 234 THR A 237 THR A 238 ILE A 283 SITE 4 AC1 23 ARG A 285 LEU A 308 ALA A 335 PHE A 336 SITE 5 AC1 23 GLY A 337 HIS A 341 CYS A 343 GLY A 345 SITE 6 AC1 23 ALA A 349 HOH A 641 HOH A 673 CRYST1 44.690 55.020 74.800 90.00 91.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022376 0.000000 0.000652 0.00000 SCALE2 0.000000 0.018175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013375 0.00000