HEADER LIGASE 28-MAY-18 6GMR TITLE PVHL:ELOB:ELOC IN COMPLEX WITH (4-(1H-PYRROL-1-YL)PHENYL)METHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGIN-B; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 5 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 6 POLYPEPTIDE 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ELONGIN-C; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: ELOC,ELONGIN 15 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 12 FACTOR SIII SUBUNIT C,SIII P15,TRANSCRIPTION ELONGATION FACTOR B COMPND 13 POLYPEPTIDE 1; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: EXTRA M INSERTED AT THE N-TERMINUS BY CLONING; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: HYPOXIA INDUCIBLE FACTOR 1ALPHA, RESIDUES 559-577; COMPND 18 CHAIN: H; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: RESIDUES 559-577 HYP564; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 23 CHAIN: V; COMPND 24 SYNONYM: PROTEIN G7,PVHL; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ELOB, TCEB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ELOC, TCEB1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: VHL; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 UBIQUITIN LIGASE, VON HIPPEL LINDAU TUMOR SUPRESSOR, PROTOC, KEYWDS 2 FRAGMENT-BASED DRUG DISCOVERY, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR I.VAN MOLLE,X.LUCAS,A.CIULLI REVDAT 2 05-SEP-18 6GMR 1 JRNL REVDAT 1 08-AUG-18 6GMR 0 JRNL AUTH X.LUCAS,I.VAN MOLLE,A.CIULLI JRNL TITL SURFACE PROBING BY FRAGMENT-BASED SCREENING AND JRNL TITL 2 COMPUTATIONAL METHODS IDENTIFIES LIGANDABLE POCKETS ON THE JRNL TITL 3 VON HIPPEL-LINDAU (VHL) E3 UBIQUITIN LIGASE. JRNL REF J. MED. CHEM. V. 61 7387 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30040896 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00842 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 44124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8493 - 4.4068 1.00 3051 157 0.1907 0.2290 REMARK 3 2 4.4068 - 3.4990 1.00 2834 161 0.1812 0.1793 REMARK 3 3 3.4990 - 3.0570 1.00 2795 174 0.1942 0.2101 REMARK 3 4 3.0570 - 2.7777 1.00 2807 132 0.2079 0.2324 REMARK 3 5 2.7777 - 2.5786 1.00 2772 126 0.2096 0.2506 REMARK 3 6 2.5786 - 2.4267 1.00 2728 163 0.2144 0.2900 REMARK 3 7 2.4267 - 2.3052 1.00 2745 131 0.2250 0.2436 REMARK 3 8 2.3052 - 2.2048 0.77 2102 123 0.3153 0.3490 REMARK 3 9 2.2048 - 2.1200 1.00 2732 140 0.2351 0.2674 REMARK 3 10 2.1200 - 2.0468 1.00 2743 137 0.2204 0.2374 REMARK 3 11 2.0468 - 1.9828 1.00 2706 153 0.2299 0.2390 REMARK 3 12 1.9828 - 1.9262 0.82 2213 113 0.3097 0.3734 REMARK 3 13 1.9262 - 1.8755 0.58 1540 92 0.4046 0.4712 REMARK 3 14 1.8755 - 1.8297 1.00 2729 141 0.2571 0.2821 REMARK 3 15 1.8297 - 1.7881 1.00 2720 122 0.2624 0.2746 REMARK 3 16 1.7881 - 1.7501 1.00 2680 162 0.2711 0.2913 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2974 REMARK 3 ANGLE : 0.844 4039 REMARK 3 CHIRALITY : 0.056 451 REMARK 3 PLANARITY : 0.005 526 REMARK 3 DIHEDRAL : 3.590 2322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.0565 -25.4192 -5.7195 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: 0.2103 REMARK 3 T33: 0.1845 T12: -0.0653 REMARK 3 T13: 0.0370 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.0932 L22: 1.1150 REMARK 3 L33: 1.4299 L12: -0.2756 REMARK 3 L13: 0.1584 L23: 0.3527 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.0412 S13: -0.0597 REMARK 3 S21: -0.0654 S22: -0.0168 S23: 0.0358 REMARK 3 S31: -0.0677 S32: -0.0708 S33: -0.0958 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07169 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: BUSTER-TNT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M K PHOSPHATE PH 6.6, 0.2 M AS, REMARK 280 20% PEG MME 5000, 5% DTT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.07000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.94000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 184.60500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.94000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.53500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 184.60500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.53500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.07000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, H, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 106 REMARK 465 ASP B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 GLN B 118 REMARK 465 GLY C 50 REMARK 465 GLN C 51 REMARK 465 PHE C 52 REMARK 465 ALA C 53 REMARK 465 GLU C 54 REMARK 465 ASN C 55 REMARK 465 GLU C 56 REMARK 465 THR C 57 REMARK 465 ASP H 559 REMARK 465 SER H 576 REMARK 465 PHE H 577 REMARK 465 GLY V 51 REMARK 465 SER V 52 REMARK 465 HIS V 53 REMARK 465 MET V 54 REMARK 465 GLU V 55 REMARK 465 ALA V 56 REMARK 465 GLY V 57 REMARK 465 ARG V 58 REMARK 465 PRO V 59 REMARK 465 GLN V 209 REMARK 465 ARG V 210 REMARK 465 MET V 211 REMARK 465 GLY V 212 REMARK 465 ASP V 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 MET C 16 CG SD CE REMARK 470 MET C 17 CG SD CE REMARK 470 ARG C 63 CG CD NE CZ NH1 NH2 REMARK 470 GLN V 73 CG CD OE1 NE2 REMARK 470 GLU V 94 CG CD OE1 OE2 REMARK 470 VAL V 142 CG1 CG2 REMARK 470 ASP V 143 CG OD1 OD2 REMARK 470 GLN V 145 CG CD OE1 NE2 REMARK 470 ILE V 147 CG1 CG2 CD1 REMARK 470 GLU V 199 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG V 182 O HOH V 401 2.13 REMARK 500 O HOH V 488 O HOH V 493 2.14 REMARK 500 O HOH B 318 O HOH B 357 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 10 -114.01 54.09 REMARK 500 ASP B 47 -123.67 61.33 REMARK 500 ASP B 47 -123.67 61.08 REMARK 500 ALA B 71 72.13 -155.84 REMARK 500 ASP B 82 -100.33 60.27 REMARK 500 PHE C 62 63.16 -119.02 REMARK 500 ARG V 69 15.60 58.99 REMARK 500 ARG V 79 45.90 -97.59 REMARK 500 SER V 111 -161.50 -116.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 394 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH C 279 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH C 280 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH C 281 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH C 282 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH C 283 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH C 284 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH C 285 DISTANCE = 11.42 ANGSTROMS REMARK 525 HOH C 286 DISTANCE = 13.04 ANGSTROMS REMARK 525 HOH H 614 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH V 545 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH V 546 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH V 547 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH V 548 DISTANCE = 9.43 ANGSTROMS REMARK 525 HOH V 549 DISTANCE = 9.78 ANGSTROMS REMARK 525 HOH V 550 DISTANCE = 10.77 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F4K V 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL V 302 DBREF 6GMR B 1 118 UNP Q15370 ELOB_HUMAN 1 118 DBREF 6GMR C 17 112 UNP Q15369 ELOC_HUMAN 17 112 DBREF 6GMR H 559 577 PDB 6GMR 6GMR 559 577 DBREF 6GMR V 54 213 UNP P40337 VHL_HUMAN 1 160 SEQADV 6GMR MET C 16 UNP Q15369 INITIATING METHIONINE SEQADV 6GMR GLY V 51 UNP P40337 EXPRESSION TAG SEQADV 6GMR SER V 52 UNP P40337 EXPRESSION TAG SEQADV 6GMR HIS V 53 UNP P40337 EXPRESSION TAG SEQRES 1 B 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 118 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 B 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 B 118 PRO GLN ASP SER GLY SER SER ALA ASN GLU GLN ALA VAL SEQRES 10 B 118 GLN SEQRES 1 C 97 MET MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU SEQRES 2 C 97 PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR SEQRES 3 C 97 ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU SEQRES 4 C 97 ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER SEQRES 5 C 97 HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS SEQRES 6 C 97 VAL ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE SEQRES 7 C 97 PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA SEQRES 8 C 97 ALA ASN PHE LEU ASP CYS SEQRES 1 H 19 ASP GLU ALA LEU ALA HYP TYR ILE PRO MET ASP ASP ASP SEQRES 2 H 19 PHE GLN LEU ARG SER PHE SEQRES 1 V 163 GLY SER HIS MET GLU ALA GLY ARG PRO ARG PRO VAL LEU SEQRES 2 V 163 ARG SER VAL ASN SER ARG GLU PRO SER GLN VAL ILE PHE SEQRES 3 V 163 CYS ASN ARG SER PRO ARG VAL VAL LEU PRO VAL TRP LEU SEQRES 4 V 163 ASN PHE ASP GLY GLU PRO GLN PRO TYR PRO THR LEU PRO SEQRES 5 V 163 PRO GLY THR GLY ARG ARG ILE HIS SER TYR ARG GLY HIS SEQRES 6 V 163 LEU TRP LEU PHE ARG ASP ALA GLY THR HIS ASP GLY LEU SEQRES 7 V 163 LEU VAL ASN GLN THR GLU LEU PHE VAL PRO SER LEU ASN SEQRES 8 V 163 VAL ASP GLY GLN PRO ILE PHE ALA ASN ILE THR LEU PRO SEQRES 9 V 163 VAL TYR THR LEU LYS GLU ARG CYS LEU GLN VAL VAL ARG SEQRES 10 V 163 SER LEU VAL LYS PRO GLU ASN TYR ARG ARG LEU ASP ILE SEQRES 11 V 163 VAL ARG SER LEU TYR GLU ASP LEU GLU ASP HIS PRO ASN SEQRES 12 V 163 VAL GLN LYS ASP LEU GLU ARG LEU THR GLN GLU ARG ILE SEQRES 13 V 163 ALA HIS GLN ARG MET GLY ASP HET HYP H 564 8 HET SO4 B 201 5 HET F4K V 301 13 HET GOL V 302 6 HETNAM HYP 4-HYDROXYPROLINE HETNAM SO4 SULFATE ION HETNAM F4K (4-PYRROL-1-YLPHENYL)METHANOL HETNAM GOL GLYCEROL HETSYN HYP HYDROXYPROLINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HYP C5 H9 N O3 FORMUL 5 SO4 O4 S 2- FORMUL 6 F4K C11 H11 N O FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *344(H2 O) HELIX 1 AA1 THR B 23 LYS B 36 1 14 HELIX 2 AA2 PRO B 38 ASP B 40 5 3 HELIX 3 AA3 LEU B 57 GLY B 61 5 5 HELIX 4 AA4 PRO B 100 LYS B 104 5 5 HELIX 5 AA5 ARG C 33 LEU C 37 1 5 HELIX 6 AA6 SER C 39 LEU C 46 1 8 HELIX 7 AA7 PRO C 66 THR C 84 1 19 HELIX 8 AA8 ALA C 96 ASP C 111 1 16 HELIX 9 AA9 THR V 157 VAL V 170 1 14 HELIX 10 AB1 LYS V 171 LEU V 178 5 8 HELIX 11 AB2 ARG V 182 ASP V 190 1 9 HELIX 12 AB3 ASN V 193 HIS V 208 1 16 SHEET 1 AA1 4 GLN B 49 LEU B 50 0 SHEET 2 AA1 4 GLN B 42 LYS B 46 -1 N LYS B 46 O GLN B 49 SHEET 3 AA1 4 ALA B 73 ALA B 81 -1 O GLY B 76 N TYR B 45 SHEET 4 AA1 4 THR B 84 PHE B 85 -1 O THR B 84 N ALA B 81 SHEET 1 AA2 8 GLN B 49 LEU B 50 0 SHEET 2 AA2 8 GLN B 42 LYS B 46 -1 N LYS B 46 O GLN B 49 SHEET 3 AA2 8 ALA B 73 ALA B 81 -1 O GLY B 76 N TYR B 45 SHEET 4 AA2 8 ASP B 2 ARG B 9 1 N MET B 6 O VAL B 75 SHEET 5 AA2 8 THR B 12 LYS B 19 -1 O ALA B 18 N VAL B 3 SHEET 6 AA2 8 GLU C 28 LYS C 32 1 O ILE C 30 N THR B 13 SHEET 7 AA2 8 TYR C 18 ILE C 22 -1 N LEU C 21 O PHE C 29 SHEET 8 AA2 8 GLU C 59 ASN C 61 1 O VAL C 60 N LYS C 20 SHEET 1 AA3 5 PHE H 572 GLN H 573 0 SHEET 2 AA3 5 THR V 105 TYR V 112 -1 O GLY V 106 N PHE H 572 SHEET 3 AA3 5 PRO V 71 ASN V 78 -1 N VAL V 74 O ILE V 109 SHEET 4 AA3 5 ILE V 147 THR V 152 1 O ALA V 149 N CYS V 77 SHEET 5 AA3 5 LEU V 129 VAL V 130 -1 N LEU V 129 O THR V 152 SHEET 1 AA4 3 PRO V 95 PRO V 97 0 SHEET 2 AA4 3 VAL V 84 LEU V 89 -1 N TRP V 88 O GLN V 96 SHEET 3 AA4 3 LEU V 116 ASP V 121 -1 O ARG V 120 N LEU V 85 LINK C ALA H 563 N HYP H 564 1555 1555 1.33 LINK C HYP H 564 N TYR H 565 1555 1555 1.33 SITE 1 AC1 6 MET B 1 ASP B 2 PHE B 4 ARG B 68 SITE 2 AC1 6 ARG C 82 GLN V 132 SITE 1 AC2 8 ARG V 120 GLY V 127 LEU V 128 GLU V 134 SITE 2 AC2 8 TYR V 156 GLU V 160 ASP V 197 HOH V 442 SITE 1 AC3 3 ARG V 161 GLN V 164 HOH V 419 CRYST1 59.880 59.880 246.140 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004063 0.00000