HEADER CELL ADHESION 28-MAY-18 6GMS TITLE SOLUTION NMR STRUCTURE OF THE MAJOR TYPE IV PILIN PPDD FROM TITLE 2 ENTEROHEMORRHAGIC ESCHERICHIA COLI (EHEC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPILIN PEPTIDASE-DEPENDENT PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: ECS0112; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TYPE IV PILIN ADHESION EHEC T4P, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.C.AMORIM,B.BARDIAUX,A.LUNA-RICO,W.ZENG,I.GUILVOUT,E.EGELMAN, AUTHOR 2 M.NILGES,O.FRANCETIC,N.IZADI-PRUNEYRE REVDAT 4 13-NOV-24 6GMS 1 REMARK REVDAT 3 14-JUN-23 6GMS 1 SSBOND REVDAT 2 10-JUL-19 6GMS 1 JRNL REVDAT 1 15-MAY-19 6GMS 0 JRNL AUTH B.BARDIAUX,G.C.DE AMORIM,A.LUNA RICO,W.ZHENG,I.GUILVOUT, JRNL AUTH 2 C.JOLLIVET,M.NILGES,E.H.EGELMAN,N.IZADI-PRUNEYRE,O.FRANCETIC JRNL TITL STRUCTURE AND ASSEMBLY OF THE ENTEROHEMORRHAGIC ESCHERICHIA JRNL TITL 2 COLI TYPE 4 PILUS. JRNL REF STRUCTURE V. 27 1082 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31056419 JRNL DOI 10.1016/J.STR.2019.03.021 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.C.AMORIM,D.A.CISNEROS,M.DELEPIERRE,O.FRANCETIC, REMARK 1 AUTH 2 N.IZADI-PRUNEYRE REMARK 1 TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS OF PPDD, A TYPE IV REMARK 1 TITL 2 PILIN FROM ENTEROHEMORRHAGIC ESCHERICHIA COLI. REMARK 1 REF BIOMOL NMR ASSIGN V. 8 43 2014 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 23242787 REMARK 1 DOI 10.1007/S12104-012-9449-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010211. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7; 7.5 REMARK 210 IONIC STRENGTH : 0.15; 0.1 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-13C; U-15N] PPDD, 50 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 12 % D2O, 90% REMARK 210 H2O/10% D2O; 0.9 MM [U-15N] PPDD, REMARK 210 25 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 12 % D20, 10 G/ REMARK 210 L PF1-PHAGES, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 2D 1H-15N HSQC IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, CCPNMR ANALYSIS, REMARK 210 TALOS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 25 -74.39 -72.21 REMARK 500 1 ALA A 78 143.47 -171.68 REMARK 500 1 GLU A 92 -141.27 60.68 REMARK 500 1 LEU A 94 37.44 -81.25 REMARK 500 1 THR A 112 81.38 -155.69 REMARK 500 2 ASN A 26 19.73 -140.64 REMARK 500 2 CYS A 60 56.96 -94.26 REMARK 500 2 GLU A 92 -117.29 46.02 REMARK 500 2 LEU A 94 38.74 -84.94 REMARK 500 2 ASP A 106 54.23 -147.59 REMARK 500 3 CYS A 60 57.00 -91.67 REMARK 500 3 ALA A 78 134.20 -170.07 REMARK 500 3 GLU A 92 -120.92 48.14 REMARK 500 3 LEU A 94 39.01 -81.44 REMARK 500 3 HIS A 152 -34.78 -176.54 REMARK 500 4 MET A 79 142.78 -170.19 REMARK 500 4 GLU A 92 -115.39 43.03 REMARK 500 4 LEU A 94 38.54 -85.19 REMARK 500 4 HIS A 152 -63.07 -152.95 REMARK 500 4 HIS A 154 103.52 -162.63 REMARK 500 5 ASN A 26 76.29 55.42 REMARK 500 5 GLU A 92 -125.11 50.47 REMARK 500 5 LEU A 94 38.53 -85.08 REMARK 500 5 HIS A 152 -61.18 -138.80 REMARK 500 5 HIS A 154 -162.33 66.79 REMARK 500 6 GLU A 25 72.75 49.87 REMARK 500 6 GLU A 92 -139.40 60.74 REMARK 500 6 LEU A 94 39.10 -82.11 REMARK 500 6 ARG A 135 150.40 -48.45 REMARK 500 7 ALA A 78 149.81 -170.05 REMARK 500 7 GLU A 92 -138.39 55.76 REMARK 500 7 LEU A 94 38.88 -83.29 REMARK 500 7 TRP A 105 -62.59 -154.44 REMARK 500 7 VAL A 111 25.30 -140.33 REMARK 500 8 GLU A 92 -143.47 57.48 REMARK 500 8 LEU A 94 38.42 -79.98 REMARK 500 8 TRP A 105 -40.68 71.82 REMARK 500 8 THR A 112 108.77 -27.94 REMARK 500 8 HIS A 152 -56.69 -120.94 REMARK 500 8 HIS A 154 96.43 70.65 REMARK 500 9 CYS A 60 74.61 -116.07 REMARK 500 9 MET A 79 141.05 -172.47 REMARK 500 9 GLU A 92 -122.42 50.07 REMARK 500 9 LEU A 94 39.87 -83.05 REMARK 500 9 ASP A 123 99.52 -161.80 REMARK 500 10 GLU A 92 -140.99 55.76 REMARK 500 10 LEU A 94 39.87 -78.07 REMARK 500 10 HIS A 152 115.03 68.82 REMARK 500 11 GLU A 92 -128.98 51.92 REMARK 500 11 LEU A 94 39.25 -81.68 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18823 RELATED DB: BMRB DBREF 6GMS A 26 140 UNP Q8X974 Q8X974_ECO57 32 146 SEQADV 6GMS MET A 24 UNP Q8X974 INITIATING METHIONINE SEQADV 6GMS GLU A 25 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS LEU A 141 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS VAL A 142 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS PRO A 143 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS ARG A 144 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS GLY A 145 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS SER A 146 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS GLY A 147 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS LEU A 148 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS GLU A 149 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS HIS A 150 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS HIS A 151 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS HIS A 152 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS HIS A 153 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS HIS A 154 UNP Q8X974 EXPRESSION TAG SEQADV 6GMS HIS A 155 UNP Q8X974 EXPRESSION TAG SEQRES 1 A 132 MET GLU ASN TYR LEU ARG LYS ALA ALA LEU THR ASP MET SEQRES 2 A 132 LEU GLN THR PHE VAL PRO TYR ARG THR ALA VAL GLU LEU SEQRES 3 A 132 CYS ALA LEU GLU HIS GLY GLY LEU ASP THR CYS ASP GLY SEQRES 4 A 132 GLY SER ASN GLY ILE PRO SER PRO THR THR THR ARG TYR SEQRES 5 A 132 VAL SER ALA MET SER VAL ALA LYS GLY VAL VAL SER LEU SEQRES 6 A 132 THR GLY GLN GLU SER LEU ASN GLY LEU SER VAL VAL MET SEQRES 7 A 132 THR PRO GLY TRP ASP ASN ALA ASN GLY VAL THR GLY TRP SEQRES 8 A 132 ALA ARG ASN CYS ASN ILE GLN SER ASP SER ALA LEU GLN SEQRES 9 A 132 GLN ALA CYS GLU ASP VAL PHE ARG PHE ASP ASP ALA ASN SEQRES 10 A 132 LEU VAL PRO ARG GLY SER GLY LEU GLU HIS HIS HIS HIS SEQRES 11 A 132 HIS HIS HELIX 1 AA1 ASN A 26 HIS A 54 1 29 HELIX 2 AA2 GLY A 56 CYS A 60 5 5 HELIX 3 AA3 ASP A 123 PHE A 134 1 12 SHEET 1 AA1 4 MET A 79 ALA A 82 0 SHEET 2 AA1 4 VAL A 85 GLN A 91 -1 O VAL A 85 N ALA A 82 SHEET 3 AA1 4 LEU A 94 PRO A 103 -1 O LEU A 94 N GLN A 91 SHEET 4 AA1 4 TRP A 114 ASN A 119 -1 O ASN A 119 N THR A 102 SSBOND 1 CYS A 50 CYS A 60 1555 1555 2.03 SSBOND 2 CYS A 118 CYS A 130 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1