HEADER BIOSYNTHETIC PROTEIN 29-MAY-18 6GMZ TITLE STAPHYLOPINE DEHYDROGENASE IN COMPLEX WITH HISTIDINE TAG AND CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOPINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-HIS-HIS-ALA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: APW47_05390; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 9 ORGANISM_TAXID: 1280; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STAPHYLOPINE BIOSYNTHESIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HAJJAR,P.ARNOUX REVDAT 1 10-APR-19 6GMZ 0 JRNL AUTH C.HAJJAR,R.FANELLI,C.LAFFONT,C.BRUTESCO,G.CULLIA,M.TRIBOUT, JRNL AUTH 2 D.NURIZZO,E.BOREZEE-DURANT,R.VOULHOUX,D.PIGNOL,J.LAVERGNE, JRNL AUTH 3 F.CAVELIER,P.ARNOUX JRNL TITL CONTROL BY METALS OF STAPHYLOPINE DEHYDROGENASE ACTIVITY JRNL TITL 2 DURING METALLOPHORE BIOSYNTHESIS. JRNL REF J.AM.CHEM.SOC. V. 141 5555 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30901200 JRNL DOI 10.1021/JACS.9B01676 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.821 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3606 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3339 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4867 ; 1.825 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7790 ; 1.029 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 7.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;38.936 ;24.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;17.324 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3914 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1726 ; 3.809 ; 4.574 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1725 ; 3.794 ; 4.572 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 5.178 ; 6.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2155 ; 5.177 ; 6.846 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1880 ; 5.346 ; 5.201 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1881 ; 5.345 ; 5.202 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2714 ; 7.877 ; 7.534 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3972 ; 9.208 ;54.479 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3939 ; 9.196 ;54.343 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 93.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 93.22000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 48.79000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 430 REMARK 465 THR A 431 REMARK 465 LEU A 432 REMARK 465 SER A 433 REMARK 465 LYS A 434 REMARK 465 GLY A 435 REMARK 465 GLU A 436 REMARK 465 LEU A 437 REMARK 465 ASN A 438 REMARK 465 SER A 439 REMARK 465 LYS A 440 REMARK 465 LEU A 441 REMARK 465 GLU A 442 REMARK 465 GLY A 443 REMARK 465 LYS A 444 REMARK 465 PRO A 445 REMARK 465 ILE A 446 REMARK 465 PRO A 447 REMARK 465 ASN A 448 REMARK 465 PRO A 449 REMARK 465 LEU A 450 REMARK 465 LEU A 451 REMARK 465 GLY A 452 REMARK 465 LEU A 453 REMARK 465 ASP A 454 REMARK 465 SER A 455 REMARK 465 THR A 456 REMARK 465 ARG A 457 REMARK 465 THR A 458 REMARK 465 GLY A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SE MSE A 382 O HOH A 781 2.01 REMARK 500 O HOH A 782 O HOH A 808 2.06 REMARK 500 O1 PG4 A 503 O HOH A 601 2.17 REMARK 500 O HOH A 762 O HOH A 775 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 90 CA - CB - CG ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 28.05 -148.84 REMARK 500 SER A 37 110.96 -164.99 REMARK 500 ASP A 138 36.67 -141.89 REMARK 500 ARG A 209 40.17 -89.59 REMARK 500 MSE A 221 61.87 -112.60 REMARK 500 ASN A 285 -74.66 -106.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 412 ASN A 413 -48.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 503 DBREF1 6GMZ A 1 433 UNP A0A1Q4GXD5_STAAU DBREF2 6GMZ A A0A1Q4GXD5 1 433 DBREF 6GMZ B 1 4 PDB 6GMZ 6GMZ 1 4 SEQADV 6GMZ LYS A 434 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ GLY A 435 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ GLU A 436 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LEU A 437 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ ASN A 438 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ SER A 439 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LYS A 440 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LEU A 441 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ GLU A 442 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ GLY A 443 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LYS A 444 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ PRO A 445 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ ILE A 446 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ PRO A 447 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ ASN A 448 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ PRO A 449 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LEU A 450 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LEU A 451 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ GLY A 452 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ LEU A 453 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ ASP A 454 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ SER A 455 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ THR A 456 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ ARG A 457 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ THR A 458 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ GLY A 459 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ HIS A 460 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ HIS A 461 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ HIS A 462 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ HIS A 463 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ HIS A 464 UNP A0A1Q4GXD EXPRESSION TAG SEQADV 6GMZ HIS A 465 UNP A0A1Q4GXD EXPRESSION TAG SEQRES 1 A 465 MSE SER LYS LEU LEU MSE ILE GLY THR GLY PRO VAL ALA SEQRES 2 A 465 ILE GLN LEU ALA ASN ILE CYS TYR LEU LYS SER ASP TYR SEQRES 3 A 465 GLU ILE ASP MSE VAL GLY ARG ALA SER THR SER GLU LYS SEQRES 4 A 465 SER LYS ARG LEU TYR GLN ALA TYR LYS LYS GLU LYS GLN SEQRES 5 A 465 PHE GLU VAL LYS ILE GLN ASN GLU ALA HIS GLN HIS LEU SEQRES 6 A 465 GLU GLY LYS PHE GLU ILE ASN ARG LEU TYR LYS ASP VAL SEQRES 7 A 465 LYS ASN VAL LYS GLY GLU TYR GLU THR VAL VAL MSE ALA SEQRES 8 A 465 CYS THR ALA ASP ALA TYR TYR ASP THR LEU GLN GLN LEU SEQRES 9 A 465 SER LEU GLU THR LEU GLN SER VAL LYS HIS VAL ILE LEU SEQRES 10 A 465 ILE SER PRO THR PHE GLY SER GLN MSE ILE VAL GLU GLN SEQRES 11 A 465 PHE MSE SER LYS PHE SER GLN ASP ILE GLU VAL ILE SER SEQRES 12 A 465 PHE SER THR TYR LEU GLY ASP THR ARG ILE VAL ASP LYS SEQRES 13 A 465 GLU ALA PRO ASN HIS VAL LEU THR THR GLY VAL LYS LYS SEQRES 14 A 465 LYS LEU TYR MSE GLY SER THR HIS SER ASN SER THR MSE SEQRES 15 A 465 CYS GLN ARG ILE SER ALA LEU ALA GLU GLN LEU LYS ILE SEQRES 16 A 465 GLN LEU GLU VAL VAL GLU SER PRO LEU HIS ALA GLU THR SEQRES 17 A 465 ARG ASN SER SER LEU TYR VAL HIS PRO PRO LEU PHE MSE SEQRES 18 A 465 ASN ASP PHE SER LEU LYS ALA ILE PHE GLU GLY THR ASP SEQRES 19 A 465 VAL PRO VAL TYR VAL TYR LYS LEU PHE PRO GLU GLY PRO SEQRES 20 A 465 ILE THR MSE THR LEU ILE ARG GLU MSE ARG LEU MSE TRP SEQRES 21 A 465 LYS GLU MSE MSE ALA ILE LEU GLN ALA PHE ARG VAL PRO SEQRES 22 A 465 SER VAL ASN LEU LEU GLN PHE MSE VAL LYS GLU ASN TYR SEQRES 23 A 465 PRO VAL ARG PRO GLU THR LEU ASP GLU GLY ASP ILE GLU SEQRES 24 A 465 HIS PHE GLU ILE LEU PRO ASP ILE LEU GLN GLU TYR LEU SEQRES 25 A 465 LEU TYR VAL ARG TYR THR ALA ILE LEU ILE ASP PRO PHE SEQRES 26 A 465 SER GLN PRO ASP GLU ASN GLY HIS TYR PHE ASP PHE SER SEQRES 27 A 465 ALA VAL PRO PHE LYS GLN VAL TYR LYS ASN GLU GLN ASP SEQRES 28 A 465 VAL VAL GLN ILE PRO ARG MSE PRO SER GLU ASP TYR TYR SEQRES 29 A 465 ARG THR ALA MSE ILE GLN HIS ILE GLY LYS MSE LEU GLY SEQRES 30 A 465 ILE LYS THR PRO MSE ILE ASP GLN PHE LEU THR ARG TYR SEQRES 31 A 465 GLU ALA SER CYS GLN ALA TYR LYS ASP MSE HIS GLN ASP SEQRES 32 A 465 GLN GLN LEU SER SER GLN PHE ASN THR ASN LEU PHE GLU SEQRES 33 A 465 GLY ASP LYS ALA LEU VAL THR LYS PHE LEU GLU ILE ASN SEQRES 34 A 465 ARG THR LEU SER LYS GLY GLU LEU ASN SER LYS LEU GLU SEQRES 35 A 465 GLY LYS PRO ILE PRO ASN PRO LEU LEU GLY LEU ASP SER SEQRES 36 A 465 THR ARG THR GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 4 ALA HIS HIS ALA MODRES 6GMZ MSE A 6 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 30 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 90 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 126 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 132 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 173 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 182 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 221 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 250 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 256 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 259 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 263 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 264 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 281 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 358 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 368 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 375 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 382 MET MODIFIED RESIDUE MODRES 6GMZ MSE A 400 MET MODIFIED RESIDUE HET MSE A 6 8 HET MSE A 30 8 HET MSE A 90 8 HET MSE A 126 8 HET MSE A 132 8 HET MSE A 173 8 HET MSE A 182 8 HET MSE A 221 8 HET MSE A 250 8 HET MSE A 256 8 HET MSE A 259 8 HET MSE A 263 8 HET MSE A 264 8 HET MSE A 281 8 HET MSE A 358 8 HET MSE A 368 8 HET MSE A 375 8 HET MSE A 382 8 HET MSE A 400 8 HET NH4 A 501 1 HET CIT A 502 13 HET PG4 A 503 13 HETNAM MSE SELENOMETHIONINE HETNAM NH4 AMMONIUM ION HETNAM CIT CITRIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 19(C5 H11 N O2 SE) FORMUL 3 NH4 H4 N 1+ FORMUL 4 CIT C6 H8 O7 FORMUL 5 PG4 C8 H18 O5 FORMUL 6 HOH *216(H2 O) HELIX 1 AA1 GLY A 10 SER A 24 1 15 HELIX 2 AA2 ARG A 33 THR A 36 5 4 HELIX 3 AA3 SER A 37 LYS A 51 1 15 HELIX 4 AA4 ASN A 59 GLU A 66 5 8 HELIX 5 AA5 ASP A 77 VAL A 81 5 5 HELIX 6 AA6 THR A 93 ASP A 95 5 3 HELIX 7 AA7 ALA A 96 GLN A 102 1 7 HELIX 8 AA8 SER A 105 VAL A 112 1 8 HELIX 9 AA9 GLY A 123 SER A 133 1 11 HELIX 10 AB1 SER A 180 LEU A 193 1 14 HELIX 11 AB2 SER A 202 THR A 208 1 7 HELIX 12 AB3 ASN A 210 MSE A 221 1 12 HELIX 13 AB4 ASN A 222 GLU A 231 1 10 HELIX 14 AB5 THR A 249 PHE A 270 1 22 HELIX 15 AB6 ASN A 276 GLU A 284 1 9 HELIX 16 AB7 ASP A 294 PHE A 301 1 8 HELIX 17 AB8 GLU A 302 LEU A 304 5 3 HELIX 18 AB9 PRO A 305 ILE A 320 1 16 HELIX 19 AC1 PRO A 356 LEU A 376 1 21 HELIX 20 AC2 THR A 380 HIS A 401 1 22 HELIX 21 AC3 SER A 408 ASN A 411 5 4 HELIX 22 AC4 PHE A 415 ASN A 429 1 15 SHEET 1 AA1 8 ARG A 73 TYR A 75 0 SHEET 2 AA1 8 GLU A 27 VAL A 31 1 N MSE A 30 O TYR A 75 SHEET 3 AA1 8 LYS A 3 ILE A 7 1 N LEU A 4 O ASP A 29 SHEET 4 AA1 8 THR A 87 MSE A 90 1 O VAL A 89 N LEU A 5 SHEET 5 AA1 8 HIS A 114 LEU A 117 1 O ILE A 116 N MSE A 90 SHEET 6 AA1 8 GLU A 140 PHE A 144 1 O ILE A 142 N LEU A 117 SHEET 7 AA1 8 LYS A 170 SER A 175 -1 O GLY A 174 N SER A 143 SHEET 8 AA1 8 GLN A 196 VAL A 199 1 O GLU A 198 N LEU A 171 SHEET 1 AA2 4 GLY A 67 PHE A 69 0 SHEET 2 AA2 4 PHE A 53 ILE A 57 -1 N PHE A 53 O PHE A 69 SHEET 3 AA2 4 HIS A 161 VAL A 167 1 O VAL A 162 N GLU A 54 SHEET 4 AA2 4 GLY A 149 ARG A 152 -1 N ARG A 152 O LEU A 163 SHEET 1 AA3 3 TYR A 346 LYS A 347 0 SHEET 2 AA3 3 VAL A 352 GLN A 354 -1 O GLN A 354 N TYR A 346 SHEET 3 AA3 3 GLN A 405 LEU A 406 1 O GLN A 405 N VAL A 353 LINK C LEU A 5 N MSE A 6 1555 1555 1.31 LINK C MSE A 6 N ILE A 7 1555 1555 1.32 LINK C ASP A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N VAL A 31 1555 1555 1.33 LINK C VAL A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ALA A 91 1555 1555 1.32 LINK C GLN A 125 N MSE A 126 1555 1555 1.32 LINK C MSE A 126 N ILE A 127 1555 1555 1.32 LINK C PHE A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N SER A 133 1555 1555 1.34 LINK C TYR A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N GLY A 174 1555 1555 1.34 LINK C THR A 181 N MSE A 182 1555 1555 1.34 LINK C MSE A 182 N CYS A 183 1555 1555 1.35 LINK C PHE A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N ASN A 222 1555 1555 1.32 LINK C THR A 249 N MSE A 250 1555 1555 1.32 LINK C MSE A 250 N THR A 251 1555 1555 1.34 LINK C GLU A 255 N MSE A 256 1555 1555 1.34 LINK C MSE A 256 N ARG A 257 1555 1555 1.32 LINK C LEU A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N TRP A 260 1555 1555 1.33 LINK C GLU A 262 N MSE A 263 1555 1555 1.33 LINK C MSE A 263 N MSE A 264 1555 1555 1.33 LINK C MSE A 264 N ALA A 265 1555 1555 1.33 LINK C PHE A 280 N MSE A 281 1555 1555 1.32 LINK C MSE A 281 N VAL A 282 1555 1555 1.30 LINK C ARG A 357 N MSE A 358 1555 1555 1.32 LINK C MSE A 358 N PRO A 359 1555 1555 1.34 LINK C ALA A 367 N MSE A 368 1555 1555 1.33 LINK C MSE A 368 N ILE A 369 1555 1555 1.33 LINK C LYS A 374 N MSE A 375 1555 1555 1.34 LINK C MSE A 375 N LEU A 376 1555 1555 1.33 LINK C PRO A 381 N MSE A 382 1555 1555 1.33 LINK C MSE A 382 N ILE A 383 1555 1555 1.33 LINK C ASP A 399 N MSE A 400 1555 1555 1.34 LINK C MSE A 400 N HIS A 401 1555 1555 1.33 CISPEP 1 PHE A 243 PRO A 244 0 10.95 CISPEP 2 MSE A 358 PRO A 359 0 14.21 SITE 1 AC1 6 VAL A 215 LEU A 219 TYR A 240 TYR A 317 SITE 2 AC1 6 CIT A 502 HIS B 3 SITE 1 AC2 10 SER A 211 SER A 212 HIS A 216 TYR A 240 SITE 2 AC2 10 ASN A 285 TYR A 286 ARG A 316 NH4 A 501 SITE 3 AC2 10 HIS B 3 ALA B 4 SITE 1 AC3 2 ARG A 185 HOH A 601 CRYST1 186.440 48.790 60.160 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016622 0.00000