HEADER HYDROLASE 31-MAY-18 6GNL TITLE ZR(IV)-SUBSTITUTED KEGGIN DIRECTLY BINDING TO THE SIDE CHAIN OF HEN TITLE 2 EGG-WHITE LYSOZYME (HEWL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS LYSOZYME, CO-CRYSTAL, HYDROLYSIS, CATALYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.VANDEBROEK,L.VAN MEERVELT,T.N.PARAC-VOGT REVDAT 3 17-JAN-24 6GNL 1 LINK REVDAT 2 14-NOV-18 6GNL 1 JRNL REVDAT 1 31-OCT-18 6GNL 0 JRNL AUTH L.VANDEBROEK,L.VAN MEERVELT,T.N.PARAC-VOGT JRNL TITL DIRECT OBSERVATION OF THE ZRIVINTERACTION WITH THE JRNL TITL 2 CARBOXAMIDE BOND IN A NONCOVALENT COMPLEX BETWEEN HEN EGG JRNL TITL 3 WHITE LYSOZYME AND A ZR-SUBSTITUTED KEGGIN POLYOXOMETALATE. JRNL REF ACTA CRYSTALLOGR C STRUCT V. 74 1348 2018 JRNL REF 2 CHEM JRNL REFN ESSN 2053-2296 JRNL PMID 30398187 JRNL DOI 10.1107/S2053229618010690 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8699 - 3.4972 1.00 2649 145 0.1714 0.1762 REMARK 3 2 3.4972 - 2.7761 1.00 2617 170 0.1499 0.1656 REMARK 3 3 2.7761 - 2.4252 0.99 2632 135 0.1402 0.1674 REMARK 3 4 2.4252 - 2.2035 0.99 2675 116 0.1331 0.1410 REMARK 3 5 2.2035 - 2.0456 1.00 2653 116 0.1237 0.1219 REMARK 3 6 2.0456 - 1.9250 1.00 2694 120 0.1311 0.1587 REMARK 3 7 1.9250 - 1.8286 1.00 2645 129 0.1245 0.1715 REMARK 3 8 1.8286 - 1.7490 1.00 2657 143 0.1330 0.1659 REMARK 3 9 1.7490 - 1.6816 1.00 2672 136 0.1288 0.1740 REMARK 3 10 1.6816 - 1.6236 1.00 2663 126 0.1292 0.1494 REMARK 3 11 1.6236 - 1.5728 1.00 2644 116 0.1341 0.2144 REMARK 3 12 1.5728 - 1.5279 1.00 2663 148 0.1446 0.1859 REMARK 3 13 1.5279 - 1.4877 1.00 2663 131 0.1410 0.2167 REMARK 3 14 1.4877 - 1.4514 1.00 2651 134 0.1419 0.1805 REMARK 3 15 1.4514 - 1.4184 1.00 2641 157 0.1501 0.1648 REMARK 3 16 1.4184 - 1.3882 1.00 2645 144 0.1549 0.2103 REMARK 3 17 1.3882 - 1.3604 1.00 2651 144 0.1616 0.1929 REMARK 3 18 1.3604 - 1.3347 1.00 2602 200 0.1625 0.1861 REMARK 3 19 1.3347 - 1.3109 1.00 2643 144 0.1719 0.1767 REMARK 3 20 1.3109 - 1.2887 1.00 2615 167 0.1850 0.2292 REMARK 3 21 1.2887 - 1.2679 1.00 2684 152 0.1891 0.2083 REMARK 3 22 1.2679 - 1.2484 1.00 2632 133 0.2110 0.2536 REMARK 3 23 1.2484 - 1.2300 1.00 2637 154 0.2280 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1302 REMARK 3 ANGLE : 1.266 2136 REMARK 3 CHIRALITY : 0.089 163 REMARK 3 PLANARITY : 0.006 196 REMARK 3 DIHEDRAL : 12.361 591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PHENIX.REFINE V 1.12 REMARK 4 REMARK 4 6GNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-17; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X06DA; X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 1.210 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; NULL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 38.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: PDBID 1LYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75 MM HEWL, 0.88 MM 2:2 ZR(IV) REMARK 280 -KEGGIN, 1.5 M NH4CL, 0.1 M BIS-TRIS PROPANE PH = 7.0, PH 7.0, REMARK 280 EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.93300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.85050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.85050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.39950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.85050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.85050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.46650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.85050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.85050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.39950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.85050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.85050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.46650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.93300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 346 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 65 ZR1 ZKG A 202 1.56 REMARK 500 OD1 ASN A 65 ZR1 ZKG A 202 2.01 REMARK 500 OD1 ASN A 65 O78 ZKG A 202 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H1 LYS A 1 O40 ZKG A 202 7556 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZKG A 201 W12 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 ZKG A 201 O41 146.8 REMARK 620 3 ZKG A 201 O75 51.6 95.5 REMARK 620 4 ZKG A 201 O40 83.6 104.9 106.3 REMARK 620 5 ZKG A 201 O59 94.2 85.2 83.7 164.7 REMARK 620 6 ZKG A 201 O46 44.1 154.9 86.2 98.6 70.0 REMARK 620 7 ZKG A 201 O43 125.9 85.3 154.6 98.0 71.0 82.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZKG A 201 W19 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 ZKG A 201 O68 143.8 REMARK 620 3 ZKG A 201 O59 82.9 83.9 REMARK 620 4 ZKG A 201 O58 94.5 102.8 171.3 REMARK 620 5 ZKG A 201 O47 120.2 87.9 74.1 100.4 REMARK 620 6 ZKG A 201 O57 61.6 84.0 86.1 100.0 159.2 REMARK 620 7 ZKG A 201 O46 32.0 154.8 71.1 102.4 88.2 91.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZKG A 201 W13 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 ZKG A 201 O76 52.2 REMARK 620 3 ZKG A 201 O60 95.1 83.8 REMARK 620 4 ZKG A 201 O45 48.2 92.0 72.3 REMARK 620 5 ZKG A 201 O44 130.8 153.5 69.9 82.8 REMARK 620 6 ZKG A 201 O42 82.0 104.2 166.6 96.4 102.2 REMARK 620 7 ZKG A 201 O41 144.0 92.0 83.1 154.5 82.4 107.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZKG A 201 W20 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 332 O REMARK 620 2 ZKG A 201 O69 60.3 REMARK 620 3 ZKG A 201 O62 118.3 70.4 REMARK 620 4 ZKG A 201 O70 56.6 98.3 167.7 REMARK 620 5 ZKG A 201 O64 130.1 156.8 87.4 104.3 REMARK 620 6 ZKG A 201 O63 58.8 84.8 83.2 101.2 85.9 REMARK 620 7 ZKG A 201 O71 134.8 88.0 72.5 102.8 91.9 155.7 REMARK 620 8 HOH A 332 O 128.3 139.6 113.1 71.9 55.4 135.2 58.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZKG A 202 W17 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 302 O REMARK 620 2 ZKG A 202 O66 155.4 REMARK 620 3 ZKG A 202 O61 98.3 79.1 REMARK 620 4 ZKG A 202 O55 71.6 84.6 71.1 REMARK 620 5 ZKG A 202 O77 35.9 156.4 77.8 92.4 REMARK 620 6 ZKG A 202 O54 81.2 98.8 174.0 103.2 104.7 REMARK 620 7 ZKG A 202 O53 122.5 81.9 85.7 155.0 91.6 99.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZKG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZKG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XYY RELATED DB: PDB REMARK 900 4XYY CONTAINS THE SAME PROTEIN, BUT WITH 1:2 ZR(IV)-KEGGIN. REMARK 900 RELATED ID: 5FHW RELATED DB: PDB REMARK 900 5FHW CONTAINS THE SAME PROTEIN, BUT WITH 1:2 HF(IV)-WELLS-DAWSON. DBREF 6GNL A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET ZKG A 201 52 HET ZKG A 202 104 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HETNAM ZKG ZIRCONIUM(IV) PHOSPHOTUNGSTATE KEGGIN HETNAM CL CHLORIDE ION FORMUL 2 ZKG 2(O39 P W11 ZR) FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *158(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.05 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 LINK W12 ZKG A 201 O HOH A 301 1555 1555 2.68 LINK W19 ZKG A 201 O HOH A 301 1555 1555 3.21 LINK W13 ZKG A 201 O HOH A 301 1555 7556 3.07 LINK W20 ZKG A 201 O BHOH A 332 1555 1555 2.73 LINK W20 ZKG A 201 O BHOH A 332 1555 7556 3.11 LINK W17AZKG A 202 O AHOH A 302 1555 1555 3.13 SITE 1 AC1 10 GLY A 16 TYR A 20 ARG A 45 ASN A 46 SITE 2 AC1 10 THR A 47 LYS A 96 ARG A 128 HOH A 301 SITE 3 AC1 10 HOH A 319 HOH A 332 SITE 1 AC2 8 LYS A 1 VAL A 2 ASN A 65 ASN A 74 SITE 2 AC2 8 ILE A 78 PRO A 79 HOH A 302 HOH A 379 SITE 1 AC3 4 SER A 24 GLY A 26 GLN A 121 HOH A 400 SITE 1 AC4 1 ILE A 88 SITE 1 AC5 2 TYR A 23 ASN A 113 CRYST1 77.701 77.701 37.866 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026409 0.00000