HEADER PROTEIN TRANSPORT 04-JUN-18 6GOX TITLE SECA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: SECA, AZI, PEA, PRLD, B0098, JW0096; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRUNCATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.A.WHITE,D.HUBER REVDAT 3 01-JUL-20 6GOX 1 JRNL REVDAT 2 21-AUG-19 6GOX 1 REMARK REVDAT 1 19-JUN-19 6GOX 0 JRNL AUTH M.JAMSHAD,T.J.KNOWLES,S.A.WHITE,D.G.WARD,F.MOHAMMED, JRNL AUTH 2 K.F.RAHMAN,M.WYNNE,G.W.HUGHES,G.KRAMER,B.BUKAU,D.HUBER JRNL TITL THE C-TERMINAL TAIL OF THE BACTERIAL TRANSLOCATION ATPASE JRNL TITL 2 SECA MODULATES ITS ACTIVITY. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31246174 JRNL DOI 10.7554/ELIFE.48385 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 157.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.54000 REMARK 3 B22 (A**2) : 4.70000 REMARK 3 B33 (A**2) : 3.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.662 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.607 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6283 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6109 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8475 ; 1.461 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14032 ; 1.123 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 773 ; 6.890 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;35.158 ;24.097 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1160 ;17.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;16.987 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 944 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7092 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1412 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31379 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 88.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.054 BIS-TRIS PROPANE, REMARK 280 PH6.4, 0.036M CITRATE, PLUS ADDITIVES, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.57000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.57000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 249 REMARK 465 GLU A 250 REMARK 465 LYS A 251 REMARK 465 GLU A 252 REMARK 465 ASP A 253 REMARK 465 SER A 254 REMARK 465 GLU A 255 REMARK 465 THR A 256 REMARK 465 PHE A 257 REMARK 465 GLN A 258 REMARK 465 GLY A 259 REMARK 465 GLU A 260 REMARK 465 GLY A 261 REMARK 465 HIS A 262 REMARK 465 PHE A 263 REMARK 465 SER A 264 REMARK 465 VAL A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 SER A 269 REMARK 465 ARG A 270 REMARK 465 GLN A 271 REMARK 465 VAL A 272 REMARK 465 ASN A 273 REMARK 465 LEU A 274 REMARK 465 THR A 275 REMARK 465 ILE A 291 REMARK 465 MET A 292 REMARK 465 ASP A 293 REMARK 465 GLU A 294 REMARK 465 ILE A 335 REMARK 465 VAL A 336 REMARK 465 ASP A 337 REMARK 465 GLU A 338 REMARK 465 HIS A 339 REMARK 465 THR A 340 REMARK 465 GLY A 341 REMARK 465 ARG A 342 REMARK 465 THR A 343 REMARK 465 MET A 344 REMARK 465 GLN A 345 REMARK 465 GLY A 346 REMARK 465 ARG A 347 REMARK 465 ARG A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 PHE A 320 CZ2 TRP A 349 0.79 REMARK 500 CE2 PHE A 320 CH2 TRP A 349 1.10 REMARK 500 OE1 GLU A 358 NE2 GLN A 366 1.21 REMARK 500 CZ PHE A 320 CZ2 TRP A 349 1.24 REMARK 500 CD2 PHE A 320 CH2 TRP A 349 1.42 REMARK 500 CG PRO A 301 OE1 GLU A 806 1.42 REMARK 500 CD GLU A 358 NE2 GLN A 366 1.44 REMARK 500 OE2 GLU A 358 NE2 GLN A 366 1.55 REMARK 500 CZ PHE A 320 CE2 TRP A 349 1.63 REMARK 500 O THR A 321 O ARG A 322 1.63 REMARK 500 CG PRO A 301 CD GLU A 806 1.76 REMARK 500 O PRO A 301 NH2 ARG A 792 1.85 REMARK 500 O THR A 321 OD1 ASP A 325 1.93 REMARK 500 CD PRO A 301 OE1 GLU A 806 1.97 REMARK 500 O ILE A 304 N LEU A 306 2.03 REMARK 500 CG PRO A 301 OE2 GLU A 806 2.04 REMARK 500 O ARG A 322 N VAL A 324 2.05 REMARK 500 OH TYR A 326 OE2 GLU A 361 2.08 REMARK 500 O ALA A 302 N ILE A 304 2.09 REMARK 500 CD1 LEU A 298 SD MET A 307 2.12 REMARK 500 O ILE A 304 N MET A 307 2.12 REMARK 500 N THR A 321 OD1 ASP A 325 2.14 REMARK 500 CB PRO A 301 OE2 GLU A 806 2.14 REMARK 500 CE2 PHE A 320 CE2 TRP A 349 2.14 REMARK 500 OE1 GLU A 358 CD GLN A 366 2.16 REMARK 500 CZ PHE A 320 CH2 TRP A 349 2.16 REMARK 500 CD2 PHE A 320 CZ2 TRP A 349 2.18 REMARK 500 O VAL A 310 N ALA A 312 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 314 N LEU A 314 CA -0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 311 C - N - CA ANGL. DEV. = -18.9 DEGREES REMARK 500 ALA A 313 CA - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 LEU A 314 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 -166.38 68.01 REMARK 500 ASP A 15 -8.35 -56.63 REMARK 500 ARG A 103 151.84 -45.89 REMARK 500 HIS A 204 -61.52 -102.70 REMARK 500 ILE A 216 -64.64 -102.30 REMARK 500 ALA A 229 -119.29 -71.32 REMARK 500 GLU A 230 -55.82 168.75 REMARK 500 ASP A 231 7.39 -68.91 REMARK 500 SER A 233 -6.94 62.92 REMARK 500 GLU A 234 -109.88 -106.40 REMARK 500 MET A 235 -52.58 -12.61 REMARK 500 ARG A 277 160.77 -49.72 REMARK 500 LEU A 286 66.51 -108.92 REMARK 500 LYS A 288 -107.83 -154.69 REMARK 500 GLU A 289 -115.52 -80.85 REMARK 500 SER A 297 92.74 -178.78 REMARK 500 TYR A 299 -31.44 132.60 REMARK 500 SER A 300 -174.12 170.24 REMARK 500 ALA A 302 -73.20 -62.29 REMARK 500 ASN A 303 71.50 -48.06 REMARK 500 ILE A 304 -75.09 -102.97 REMARK 500 MET A 305 -66.43 -0.20 REMARK 500 VAL A 310 -60.21 -106.43 REMARK 500 THR A 311 -18.94 -36.44 REMARK 500 ALA A 316 54.27 -111.16 REMARK 500 HIS A 317 -52.28 -131.41 REMARK 500 ARG A 322 -143.97 -29.22 REMARK 500 ASP A 323 37.27 -45.34 REMARK 500 ASP A 351 94.17 33.29 REMARK 500 ASN A 369 134.33 -39.48 REMARK 500 THR A 393 -0.93 -59.48 REMARK 500 ALA A 394 -90.11 -30.44 REMARK 500 ASP A 395 -89.67 39.74 REMARK 500 THR A 396 -0.05 46.00 REMARK 500 ASN A 505 62.77 38.81 REMARK 500 ALA A 507 -99.06 -52.60 REMARK 500 ARG A 509 -55.26 64.41 REMARK 500 ILE A 597 -4.09 -59.74 REMARK 500 ALA A 599 34.71 20.25 REMARK 500 MET A 612 -42.73 73.14 REMARK 500 LYS A 613 90.61 61.00 REMARK 500 PRO A 614 67.99 -20.84 REMARK 500 GLU A 619 120.92 84.30 REMARK 500 LEU A 730 -84.47 -47.01 REMARK 500 HIS A 731 142.73 77.08 REMARK 500 ILE A 789 45.56 -78.86 REMARK 500 LEU A 791 -16.93 -173.98 REMARK 500 TYR A 794 -91.53 -137.94 REMARK 500 ALA A 795 97.40 -68.55 REMARK 500 GLN A 796 -64.12 77.37 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 313 15.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GOX A 13 834 UNP P10408 SECA_ECOLI 13 834 SEQRES 1 A 822 ARG ASN ASP ARG THR LEU ARG ARG MET ARG LYS VAL VAL SEQRES 2 A 822 ASN ILE ILE ASN ALA MET GLU PRO GLU MET GLU LYS LEU SEQRES 3 A 822 SER ASP GLU GLU LEU LYS GLY LYS THR ALA GLU PHE ARG SEQRES 4 A 822 ALA ARG LEU GLU LYS GLY GLU VAL LEU GLU ASN LEU ILE SEQRES 5 A 822 PRO GLU ALA PHE ALA VAL VAL ARG GLU ALA SER LYS ARG SEQRES 6 A 822 VAL PHE GLY MET ARG HIS PHE ASP VAL GLN LEU LEU GLY SEQRES 7 A 822 GLY MET VAL LEU ASN GLU ARG CYS ILE ALA GLU MET ARG SEQRES 8 A 822 THR GLY GLU GLY LYS THR LEU THR ALA THR LEU PRO ALA SEQRES 9 A 822 TYR LEU ASN ALA LEU THR GLY LYS GLY VAL HIS VAL VAL SEQRES 10 A 822 THR VAL ASN ASP TYR LEU ALA GLN ARG ASP ALA GLU ASN SEQRES 11 A 822 ASN ARG PRO LEU PHE GLU PHE LEU GLY LEU THR VAL GLY SEQRES 12 A 822 ILE ASN LEU PRO GLY MET PRO ALA PRO ALA LYS ARG GLU SEQRES 13 A 822 ALA TYR ALA ALA ASP ILE THR TYR GLY THR ASN ASN GLU SEQRES 14 A 822 TYR GLY PHE ASP TYR LEU ARG ASP ASN MET ALA PHE SER SEQRES 15 A 822 PRO GLU GLU ARG VAL GLN ARG LYS LEU HIS TYR ALA LEU SEQRES 16 A 822 VAL ASP GLU VAL ASP SER ILE LEU ILE ASP GLU ALA ARG SEQRES 17 A 822 THR PRO LEU ILE ILE SER GLY PRO ALA GLU ASP SER SER SEQRES 18 A 822 GLU MET TYR LYS ARG VAL ASN LYS ILE ILE PRO HIS LEU SEQRES 19 A 822 ILE ARG GLN GLU LYS GLU ASP SER GLU THR PHE GLN GLY SEQRES 20 A 822 GLU GLY HIS PHE SER VAL ASP GLU LYS SER ARG GLN VAL SEQRES 21 A 822 ASN LEU THR GLU ARG GLY LEU VAL LEU ILE GLU GLU LEU SEQRES 22 A 822 LEU VAL LYS GLU GLY ILE MET ASP GLU GLY GLU SER LEU SEQRES 23 A 822 TYR SER PRO ALA ASN ILE MET LEU MET HIS HIS VAL THR SEQRES 24 A 822 ALA ALA LEU ARG ALA HIS ALA LEU PHE THR ARG ASP VAL SEQRES 25 A 822 ASP TYR ILE VAL LYS ASP GLY GLU VAL ILE ILE VAL ASP SEQRES 26 A 822 GLU HIS THR GLY ARG THR MET GLN GLY ARG ARG TRP SER SEQRES 27 A 822 ASP GLY LEU HIS GLN ALA VAL GLU ALA LYS GLU GLY VAL SEQRES 28 A 822 GLN ILE GLN ASN GLU ASN GLN THR LEU ALA SER ILE THR SEQRES 29 A 822 PHE GLN ASN TYR PHE ARG LEU TYR GLU LYS LEU ALA GLY SEQRES 30 A 822 MET THR GLY THR ALA ASP THR GLU ALA PHE GLU PHE SER SEQRES 31 A 822 SER ILE TYR LYS LEU ASP THR VAL VAL VAL PRO THR ASN SEQRES 32 A 822 ARG PRO MET ILE ARG LYS ASP LEU PRO ASP LEU VAL TYR SEQRES 33 A 822 MET THR GLU ALA GLU LYS ILE GLN ALA ILE ILE GLU ASP SEQRES 34 A 822 ILE LYS GLU ARG THR ALA LYS GLY GLN PRO VAL LEU VAL SEQRES 35 A 822 GLY THR ILE SER ILE GLU LYS SER GLU LEU VAL SER ASN SEQRES 36 A 822 GLU LEU THR LYS ALA GLY ILE LYS HIS ASN VAL LEU ASN SEQRES 37 A 822 ALA LYS PHE HIS ALA ASN GLU ALA ALA ILE VAL ALA GLN SEQRES 38 A 822 ALA GLY TYR PRO ALA ALA VAL THR ILE ALA THR ASN MET SEQRES 39 A 822 ALA GLY ARG GLY THR ASP ILE VAL LEU GLY GLY SER TRP SEQRES 40 A 822 GLN ALA GLU VAL ALA ALA LEU GLU ASN PRO THR ALA GLU SEQRES 41 A 822 GLN ILE GLU LYS ILE LYS ALA ASP TRP GLN VAL ARG HIS SEQRES 42 A 822 ASP ALA VAL LEU GLU ALA GLY GLY LEU HIS ILE ILE GLY SEQRES 43 A 822 THR GLU ARG HIS GLU SER ARG ARG ILE ASP ASN GLN LEU SEQRES 44 A 822 ARG GLY ARG SER GLY ARG GLN GLY ASP ALA GLY SER SER SEQRES 45 A 822 ARG PHE TYR LEU SER MET GLU ASP ALA LEU MET ARG ILE SEQRES 46 A 822 PHE ALA SER ASP ARG VAL SER GLY MET MET ARG LYS LEU SEQRES 47 A 822 GLY MET LYS PRO GLY GLU ALA ILE GLU HIS PRO TRP VAL SEQRES 48 A 822 THR LYS ALA ILE ALA ASN ALA GLN ARG LYS VAL GLU SER SEQRES 49 A 822 ARG ASN PHE ASP ILE ARG LYS GLN LEU LEU GLU TYR ASP SEQRES 50 A 822 ASP VAL ALA ASN ASP GLN ARG ARG ALA ILE TYR SER GLN SEQRES 51 A 822 ARG ASN GLU LEU LEU ASP VAL SER ASP VAL SER GLU THR SEQRES 52 A 822 ILE ASN SER ILE ARG GLU ASP VAL PHE LYS ALA THR ILE SEQRES 53 A 822 ASP ALA TYR ILE PRO PRO GLN SER LEU GLU GLU MET TRP SEQRES 54 A 822 ASP ILE PRO GLY LEU GLN GLU ARG LEU LYS ASN ASP PHE SEQRES 55 A 822 ASP LEU ASP LEU PRO ILE ALA GLU TRP LEU ASP LYS GLU SEQRES 56 A 822 PRO GLU LEU HIS GLU GLU THR LEU ARG GLU ARG ILE LEU SEQRES 57 A 822 ALA GLN SER ILE GLU VAL TYR GLN ARG LYS GLU GLU VAL SEQRES 58 A 822 VAL GLY ALA GLU MET MET ARG HIS PHE GLU LYS GLY VAL SEQRES 59 A 822 MET LEU GLN THR LEU ASP SER LEU TRP LYS GLU HIS LEU SEQRES 60 A 822 ALA ALA MET ASP TYR LEU ARG GLN GLY ILE HIS LEU ARG SEQRES 61 A 822 GLY TYR ALA GLN LYS ASP PRO LYS GLN GLU TYR LYS ARG SEQRES 62 A 822 GLU SER PHE SER MET PHE ALA ALA MET LEU GLU SER LEU SEQRES 63 A 822 LYS TYR GLU VAL ILE SER THR LEU SER LYS VAL GLN VAL SEQRES 64 A 822 ARG MET PRO HELIX 1 AA1 ARG A 13 LEU A 38 1 26 HELIX 2 AA2 SER A 39 LYS A 56 1 18 HELIX 3 AA3 VAL A 59 ASN A 62 5 4 HELIX 4 AA4 LEU A 63 VAL A 78 1 16 HELIX 5 AA5 PHE A 84 GLU A 96 1 13 HELIX 6 AA6 GLY A 107 ALA A 112 1 6 HELIX 7 AA7 ALA A 112 LEU A 121 1 10 HELIX 8 AA8 ASN A 132 LEU A 150 1 19 HELIX 9 AA9 PRO A 162 ALA A 172 1 11 HELIX 10 AB1 ASN A 179 ASN A 190 1 12 HELIX 11 AB2 SER A 194 ARG A 198 5 5 HELIX 12 AB3 GLU A 210 LEU A 215 1 6 HELIX 13 AB4 GLU A 234 LYS A 241 1 8 HELIX 14 AB5 ILE A 242 LEU A 246 5 5 HELIX 15 AB6 GLY A 278 LEU A 285 1 8 HELIX 16 AB7 MET A 305 ALA A 316 1 12 HELIX 17 AB8 THR A 321 ASP A 325 5 5 HELIX 18 AB9 GLY A 352 GLU A 361 1 10 HELIX 19 AC1 PHE A 377 ARG A 382 1 6 HELIX 20 AC2 GLU A 397 LYS A 406 1 10 HELIX 21 AC3 THR A 430 LYS A 448 1 19 HELIX 22 AC4 SER A 458 ALA A 472 1 15 HELIX 23 AC5 PHE A 483 ALA A 494 1 12 HELIX 24 AC6 SER A 518 LEU A 526 1 9 HELIX 25 AC7 GLU A 532 GLY A 552 1 21 HELIX 26 AC8 SER A 564 GLY A 573 1 10 HELIX 27 AC9 ARG A 574 SER A 575 5 2 HELIX 28 AD1 GLY A 576 ASP A 580 5 5 HELIX 29 AD2 ASP A 592 ILE A 597 5 6 HELIX 30 AD3 SER A 600 GLY A 605 1 6 HELIX 31 AD4 MET A 606 GLY A 611 5 6 HELIX 32 AD5 HIS A 620 VAL A 669 1 50 HELIX 33 AD6 VAL A 672 ALA A 690 1 19 HELIX 34 AD7 LEU A 697 TRP A 701 5 5 HELIX 35 AD8 ASP A 702 ASP A 715 1 14 HELIX 36 AD9 PRO A 719 GLU A 727 1 9 HELIX 37 AE1 HIS A 731 GLY A 755 1 25 HELIX 38 AE2 GLY A 755 GLY A 788 1 34 HELIX 39 AE3 GLN A 801 VAL A 829 1 29 SHEET 1 AA1 7 VAL A 154 ASN A 157 0 SHEET 2 AA1 7 ILE A 174 THR A 178 1 O TYR A 176 N ASN A 157 SHEET 3 AA1 7 HIS A 127 THR A 130 1 N VAL A 128 O THR A 175 SHEET 4 AA1 7 TYR A 205 VAL A 208 1 O LEU A 207 N VAL A 129 SHEET 5 AA1 7 LYS A 386 THR A 391 1 O MET A 390 N VAL A 208 SHEET 6 AA1 7 CYS A 98 MET A 102 1 N ALA A 100 O GLY A 389 SHEET 7 AA1 7 ASP A 408 VAL A 412 1 O VAL A 410 N GLU A 101 SHEET 1 AA2 2 PRO A 222 GLY A 227 0 SHEET 2 AA2 2 GLN A 370 THR A 376 -1 O LEU A 372 N ILE A 225 SHEET 1 AA3 2 ILE A 327 LYS A 329 0 SHEET 2 AA3 2 GLU A 332 ILE A 334 -1 O ILE A 334 N ILE A 327 SHEET 1 AA4 3 ARG A 420 ASP A 422 0 SHEET 2 AA4 3 GLY A 582 SER A 589 1 O SER A 584 N LYS A 421 SHEET 3 AA4 3 LEU A 426 TYR A 428 1 N LEU A 426 O LEU A 588 SHEET 1 AA5 6 ARG A 420 ASP A 422 0 SHEET 2 AA5 6 GLY A 582 SER A 589 1 O SER A 584 N LYS A 421 SHEET 3 AA5 6 LEU A 554 GLY A 558 1 N GLY A 558 O ARG A 585 SHEET 4 AA5 6 VAL A 452 THR A 456 1 N GLY A 455 O ILE A 557 SHEET 5 AA5 6 VAL A 500 THR A 504 1 O THR A 501 N VAL A 454 SHEET 6 AA5 6 ASN A 477 VAL A 478 1 N ASN A 477 O ILE A 502 CISPEP 1 GLU A 296 SER A 297 0 2.94 CISPEP 2 SER A 300 PRO A 301 0 -22.69 CRYST1 163.140 106.830 75.980 90.00 102.81 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006130 0.000000 0.001394 0.00000 SCALE2 0.000000 0.009361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013498 0.00000