HEADER SIGNALING PROTEIN 07-JUN-18 6GPX TITLE CRYSTAL STRUCTURE OF CCR2A IN COMPLEX WITH MK-0812 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C CHEMOKINE RECEPTOR TYPE 2,RUBREDOXIN,C-C CHEMOKINE COMPND 3 RECEPTOR TYPE 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RUBREDOXIN INSERTED INTO CCR2A BETWEEN RESIDUE 231 AND 235, COMPND 6 RUBREDOXIN INSERTED INTO CCR2A BETWEEN RESIDUE 231 AND 235,RUBREDOXIN COMPND 7 INSERTED INTO CCR2A BETWEEN RESIDUE 231 AND 235; COMPND 8 SYNONYM: CCR2,MONOCYTE CHEMOATTRACTANT PROTEIN 1 RECEPTOR,MCP-1-R,RD, COMPND 9 CCR2,MONOCYTE CHEMOATTRACTANT PROTEIN 1 RECEPTOR,MCP-1-R; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1501; SOURCE 5 GENE: CCR2, CMKBR2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GPCR, SIGNALLING, DRUG-DESIGN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PAUTSCH,G.SCHNAPP,R.CHENG,A.APEL REVDAT 2 13-MAR-19 6GPX 1 JRNL REVDAT 1 02-JAN-19 6GPX 0 JRNL AUTH A.K.APEL,R.K.Y.CHENG,C.S.TAUTERMANN,M.BRAUCHLE,C.Y.HUANG, JRNL AUTH 2 A.PAUTSCH,M.HENNIG,H.NAR,G.SCHNAPP JRNL TITL CRYSTAL STRUCTURE OF CC CHEMOKINE RECEPTOR 2A IN COMPLEX JRNL TITL 2 WITH AN ORTHOSTERIC ANTAGONIST PROVIDES INSIGHTS FOR THE JRNL TITL 3 DESIGN OF SELECTIVE ANTAGONISTS. JRNL REF STRUCTURE V. 27 427 2019 JRNL REFN ISSN 1878-4186 JRNL PMID 30581043 JRNL DOI 10.1016/J.STR.2018.10.027 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 507 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2289 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 482 REMARK 3 BIN R VALUE (WORKING SET) : 0.2263 REMARK 3 BIN FREE R VALUE : 0.2793 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4695 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 276 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93640 REMARK 3 B22 (A**2) : -14.92870 REMARK 3 B33 (A**2) : 15.86500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.46020 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.555 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.282 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10264 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 18636 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2294 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1484 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 10264 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 659 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 10589 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.85 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.59 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 59.7329 6.7014 33.1882 REMARK 3 T TENSOR REMARK 3 T11: -0.0612 T22: 0.0396 REMARK 3 T33: -0.1978 T12: -0.0588 REMARK 3 T13: 0.0315 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.2256 L22: 0.4235 REMARK 3 L33: 2.1827 L12: -0.2247 REMARK 3 L13: 0.2256 L23: -0.3173 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.0775 S13: -0.0410 REMARK 3 S21: -0.0098 S22: 0.0917 S23: -0.0922 REMARK 3 S31: 0.0977 S32: 0.0158 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 36.2929 24.2213 39.1113 REMARK 3 T TENSOR REMARK 3 T11: -0.0650 T22: 0.0348 REMARK 3 T33: -0.1962 T12: 0.0213 REMARK 3 T13: 0.0081 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.5569 L22: 0.6528 REMARK 3 L33: 2.7109 L12: 0.3767 REMARK 3 L13: -0.1920 L23: 0.2032 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0262 S13: 0.0044 REMARK 3 S21: -0.0307 S22: -0.0219 S23: -0.0174 REMARK 3 S31: -0.2417 S32: -0.2228 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 53.9055 10.9720 47.7594 REMARK 3 T TENSOR REMARK 3 T11: -0.0597 T22: -0.0248 REMARK 3 T33: 0.0201 T12: 0.0217 REMARK 3 T13: -0.0112 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.7688 L22: 0.8585 REMARK 3 L33: -0.0216 L12: -0.1621 REMARK 3 L13: -0.5130 L23: -0.5727 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0045 S13: 0.0021 REMARK 3 S21: 0.0060 S22: 0.0034 S23: 0.0033 REMARK 3 S31: -0.0221 S32: 0.0383 S33: -0.0081 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { X|* } REMARK 3 ORIGIN FOR THE GROUP (A): 45.0976 10.3587 52.6619 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: 0.0011 REMARK 3 T33: -0.0130 T12: 0.0045 REMARK 3 T13: -0.0080 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.8945 L12: -0.8785 REMARK 3 L13: -0.0094 L23: -0.2199 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0081 S13: -0.0061 REMARK 3 S21: 0.0024 S22: -0.0111 S23: -0.0058 REMARK 3 S31: -0.0079 S32: -0.0262 S33: 0.0107 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25298 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.80 REMARK 200 R MERGE (I) : 0.55000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CONCENTRATED TO 20-25 REMARK 280 MG/ML AND RECONSTITUTED INTO LCP BY MIXING WITH 90% MONOOLEIN/10% REMARK 280 CHOLESTEROL AT A 40:60 (W:W) PROTEIN:LIPID RATIO. LCP REMARK 280 CRYSTALLIZATION WERE SET UP USING THE IMISX IN-SITU REMARK 280 CRYSTALLIZATION PLATE. 40NL OF LCP BOLUS WERE DISPENSED USING REMARK 280 THE MOSQUITO LCP ROBOT (TTP LABTECH) AND OVERLAID WITH 800 NL OF REMARK 280 PRECIPITANT SOLUTION. CRYSTALS WERE OBTAINED IN 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 0.2 M POTASSIUM NITRATE, 39% (V/V) PEG400, 3% (V/ REMARK 280 V) 1,2-PROPANEDIOL, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 CYS A 32 REMARK 465 HIS A 33 REMARK 465 LYS A 34 REMARK 465 PHE A 35 REMARK 465 ALA A 145 REMARK 465 VAL A 146 REMARK 465 PHE A 147 REMARK 465 ALA A 148 REMARK 465 LEU A 149 REMARK 465 LYS A 150 REMARK 465 ALA A 151 REMARK 465 ARG A 152 REMARK 465 GLU A 285 REMARK 465 GLU A 286 REMARK 465 LYS A 287 REMARK 465 LYS A 288 REMARK 465 ARG A 289 REMARK 465 HIS A 290 REMARK 465 VAL A 374 REMARK 465 LEU A 375 REMARK 465 PHE A 376 REMARK 465 GLN A 377 REMARK 465 GLY B 29 REMARK 465 ALA B 30 REMARK 465 PRO B 31 REMARK 465 CYS B 32 REMARK 465 HIS B 33 REMARK 465 LYS B 34 REMARK 465 LEU B 229A REMARK 465 ARG B 229B REMARK 465 MET B 229C REMARK 465 LYS B 229D REMARK 465 LYS B 229E REMARK 465 TYR B 229F REMARK 465 THR B 229G REMARK 465 CYS B 229H REMARK 465 THR B 229I REMARK 465 VAL B 229J REMARK 465 CYS B 229K REMARK 465 GLY B 229L REMARK 465 TYR B 229M REMARK 465 ILE B 229N REMARK 465 TYR B 229O REMARK 465 ASN B 229P REMARK 465 PRO B 229Q REMARK 465 GLU B 229R REMARK 465 ASP B 229S REMARK 465 GLY B 229T REMARK 465 ASP B 229U REMARK 465 PRO B 229V REMARK 465 ASP B 229W REMARK 465 ASN B 229X REMARK 465 GLY B 229Y REMARK 465 VAL B 229Z REMARK 465 ASN B 230A REMARK 465 PRO B 230B REMARK 465 GLY B 230C REMARK 465 THR B 230D REMARK 465 ASP B 230E REMARK 465 PHE B 230F REMARK 465 LYS B 230G REMARK 465 ASP B 230H REMARK 465 ILE B 230I REMARK 465 PRO B 230J REMARK 465 ASP B 230K REMARK 465 ASP B 230L REMARK 465 TRP B 230M REMARK 465 VAL B 230N REMARK 465 CYS B 230O REMARK 465 PRO B 230P REMARK 465 LEU B 230Q REMARK 465 CYS B 230R REMARK 465 GLY B 230S REMARK 465 VAL B 230T REMARK 465 GLY B 230U REMARK 465 LYS B 230V REMARK 465 ASP B 230W REMARK 465 GLN B 230X REMARK 465 PHE B 230Y REMARK 465 GLU B 230Z REMARK 465 GLU B 231A REMARK 465 VAL B 231B REMARK 465 GLU B 231C REMARK 465 GLU B 231D REMARK 465 GLU B 231E REMARK 465 LYS B 231F REMARK 465 LYS B 231G REMARK 465 ARG B 231H REMARK 465 HIS B 231I REMARK 465 ARG B 231J REMARK 465 GLY B 309 REMARK 465 GLU B 310 REMARK 465 LYS B 311 REMARK 465 PHE B 312 REMARK 465 ARG B 313 REMARK 465 SER B 314 REMARK 465 LEU B 315 REMARK 465 PHE B 316 REMARK 465 HIS B 317 REMARK 465 ILE B 318 REMARK 465 ALA B 319 REMARK 465 LEU B 320 REMARK 465 GLY B 321 REMARK 465 GLU B 322 REMARK 465 VAL B 323 REMARK 465 LEU B 324 REMARK 465 PHE B 325 REMARK 465 GLN B 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 185 -105.96 69.26 REMARK 500 LEU A 211 -52.03 -129.77 REMARK 500 VAL A 239 -70.01 -93.72 REMARK 500 ASP A 250 69.74 -162.21 REMARK 500 PHE A 319 49.31 -102.17 REMARK 500 LEU B 149 113.79 -39.61 REMARK 500 ASP B 185 -95.25 66.74 REMARK 500 LEU B 211 -52.04 -129.80 REMARK 500 PHE B 268 53.51 -102.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 402 REMARK 610 OLA A 403 REMARK 610 OLA A 404 REMARK 610 OLA A 406 REMARK 610 OLA A 408 REMARK 610 OLA A 409 REMARK 610 OLA A 410 REMARK 610 OLA A 411 REMARK 610 OLA B 401 REMARK 610 OLA B 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 237 SG REMARK 620 2 CYS A 240 SG 109.7 REMARK 620 3 CYS A 270 SG 113.7 109.1 REMARK 620 4 CYS A 273 SG 101.9 107.5 114.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T1A RELATED DB: PDB REMARK 900 STRUCTURE OF CCR2B REMARK 900 RELATED ID: 6GPS RELATED DB: PDB REMARK 900 CCR2A STRUCTURE-A DBREF 6GPX A 29 231 UNP P41597 CCR2_HUMAN 29 231 DBREF 6GPX A 232 257 UNP P00268 RUBR_CLOPA 1 54 DBREF 6GPX A 258 372 UNP P41597 CCR2_HUMAN 235 321 DBREF 6GPX B 29 229B UNP P41597 CCR2_HUMAN 29 231 DBREF 6GPX B 229C 231D UNP P00268 RUBR_CLOPA 1 54 DBREF 6GPX B 231E 321 UNP P41597 CCR2_HUMAN 235 321 SEQADV 6GPX TYR A 70 UNP P41597 CYS 70 CONFLICT SEQADV 6GPX ASN A 175 UNP P41597 GLY 175 CONFLICT SEQADV 6GPX ASP A 292 UNP P41597 ALA 241 CONFLICT SEQADV 6GPX GLU A 373 UNP P41597 EXPRESSION TAG SEQADV 6GPX VAL A 374 UNP P41597 EXPRESSION TAG SEQADV 6GPX LEU A 375 UNP P41597 EXPRESSION TAG SEQADV 6GPX PHE A 376 UNP P41597 EXPRESSION TAG SEQADV 6GPX GLN A 377 UNP P41597 EXPRESSION TAG SEQADV 6GPX TYR B 70 UNP P41597 CYS 70 CONFLICT SEQADV 6GPX ASN B 175 UNP P41597 GLY 175 CONFLICT SEQADV 6GPX ASP B 241 UNP P41597 ALA 241 CONFLICT SEQADV 6GPX GLU B 322 UNP P41597 EXPRESSION TAG SEQADV 6GPX VAL B 323 UNP P41597 EXPRESSION TAG SEQADV 6GPX LEU B 324 UNP P41597 EXPRESSION TAG SEQADV 6GPX PHE B 325 UNP P41597 EXPRESSION TAG SEQADV 6GPX GLN B 326 UNP P41597 EXPRESSION TAG SEQRES 1 A 349 GLY ALA PRO CYS HIS LYS PHE ASP VAL LYS GLN ILE GLY SEQRES 2 A 349 ALA GLN LEU LEU PRO PRO LEU TYR SER LEU VAL PHE ILE SEQRES 3 A 349 PHE GLY PHE VAL GLY ASN MET LEU VAL VAL LEU ILE LEU SEQRES 4 A 349 ILE ASN TYR LYS LYS LEU LYS CYS LEU THR ASP ILE TYR SEQRES 5 A 349 LEU LEU ASN LEU ALA ILE SER ASP LEU LEU PHE LEU ILE SEQRES 6 A 349 THR LEU PRO LEU TRP ALA HIS SER ALA ALA ASN GLU TRP SEQRES 7 A 349 VAL PHE GLY ASN ALA MET CYS LYS LEU PHE THR GLY LEU SEQRES 8 A 349 TYR HIS ILE GLY TYR PHE GLY GLY ILE PHE PHE ILE ILE SEQRES 9 A 349 LEU LEU THR ILE ASP ARG TYR LEU ALA ILE VAL HIS ALA SEQRES 10 A 349 VAL PHE ALA LEU LYS ALA ARG THR VAL THR PHE GLY VAL SEQRES 11 A 349 VAL THR SER VAL ILE THR TRP LEU VAL ALA VAL PHE ALA SEQRES 12 A 349 SER VAL PRO ASN ILE ILE PHE THR LYS CYS GLN LYS GLU SEQRES 13 A 349 ASP SER VAL TYR VAL CYS GLY PRO TYR PHE PRO ARG GLY SEQRES 14 A 349 TRP ASN ASN PHE HIS THR ILE MET ARG ASN ILE LEU GLY SEQRES 15 A 349 LEU VAL LEU PRO LEU LEU ILE MET VAL ILE CYS TYR SER SEQRES 16 A 349 GLY ILE LEU LYS THR LEU LEU ARG MET LYS LYS TYR THR SEQRES 17 A 349 CYS THR VAL CYS GLY TYR ILE TYR ASN PRO GLU ASP GLY SEQRES 18 A 349 ASP PRO ASP ASN GLY VAL ASN PRO GLY THR ASP PHE LYS SEQRES 19 A 349 ASP ILE PRO ASP ASP TRP VAL CYS PRO LEU CYS GLY VAL SEQRES 20 A 349 GLY LYS ASP GLN PHE GLU GLU VAL GLU GLU GLU LYS LYS SEQRES 21 A 349 ARG HIS ARG ASP VAL ARG VAL ILE PHE THR ILE MET ILE SEQRES 22 A 349 VAL TYR PHE LEU PHE TRP THR PRO TYR ASN ILE VAL ILE SEQRES 23 A 349 LEU LEU ASN THR PHE GLN GLU PHE PHE GLY LEU SER ASN SEQRES 24 A 349 CYS GLU SER THR SER GLN LEU ASP GLN ALA THR GLN VAL SEQRES 25 A 349 THR GLU THR LEU GLY MET THR HIS CYS CYS ILE ASN PRO SEQRES 26 A 349 ILE ILE TYR ALA PHE VAL GLY GLU LYS PHE ARG SER LEU SEQRES 27 A 349 PHE HIS ILE ALA LEU GLY GLU VAL LEU PHE GLN SEQRES 1 B 349 GLY ALA PRO CYS HIS LYS PHE ASP VAL LYS GLN ILE GLY SEQRES 2 B 349 ALA GLN LEU LEU PRO PRO LEU TYR SER LEU VAL PHE ILE SEQRES 3 B 349 PHE GLY PHE VAL GLY ASN MET LEU VAL VAL LEU ILE LEU SEQRES 4 B 349 ILE ASN TYR LYS LYS LEU LYS CYS LEU THR ASP ILE TYR SEQRES 5 B 349 LEU LEU ASN LEU ALA ILE SER ASP LEU LEU PHE LEU ILE SEQRES 6 B 349 THR LEU PRO LEU TRP ALA HIS SER ALA ALA ASN GLU TRP SEQRES 7 B 349 VAL PHE GLY ASN ALA MET CYS LYS LEU PHE THR GLY LEU SEQRES 8 B 349 TYR HIS ILE GLY TYR PHE GLY GLY ILE PHE PHE ILE ILE SEQRES 9 B 349 LEU LEU THR ILE ASP ARG TYR LEU ALA ILE VAL HIS ALA SEQRES 10 B 349 VAL PHE ALA LEU LYS ALA ARG THR VAL THR PHE GLY VAL SEQRES 11 B 349 VAL THR SER VAL ILE THR TRP LEU VAL ALA VAL PHE ALA SEQRES 12 B 349 SER VAL PRO ASN ILE ILE PHE THR LYS CYS GLN LYS GLU SEQRES 13 B 349 ASP SER VAL TYR VAL CYS GLY PRO TYR PHE PRO ARG GLY SEQRES 14 B 349 TRP ASN ASN PHE HIS THR ILE MET ARG ASN ILE LEU GLY SEQRES 15 B 349 LEU VAL LEU PRO LEU LEU ILE MET VAL ILE CYS TYR SER SEQRES 16 B 349 GLY ILE LEU LYS THR LEU LEU ARG MET LYS LYS TYR THR SEQRES 17 B 349 CYS THR VAL CYS GLY TYR ILE TYR ASN PRO GLU ASP GLY SEQRES 18 B 349 ASP PRO ASP ASN GLY VAL ASN PRO GLY THR ASP PHE LYS SEQRES 19 B 349 ASP ILE PRO ASP ASP TRP VAL CYS PRO LEU CYS GLY VAL SEQRES 20 B 349 GLY LYS ASP GLN PHE GLU GLU VAL GLU GLU GLU LYS LYS SEQRES 21 B 349 ARG HIS ARG ASP VAL ARG VAL ILE PHE THR ILE MET ILE SEQRES 22 B 349 VAL TYR PHE LEU PHE TRP THR PRO TYR ASN ILE VAL ILE SEQRES 23 B 349 LEU LEU ASN THR PHE GLN GLU PHE PHE GLY LEU SER ASN SEQRES 24 B 349 CYS GLU SER THR SER GLN LEU ASP GLN ALA THR GLN VAL SEQRES 25 B 349 THR GLU THR LEU GLY MET THR HIS CYS CYS ILE ASN PRO SEQRES 26 B 349 ILE ILE TYR ALA PHE VAL GLY GLU LYS PHE ARG SER LEU SEQRES 27 B 349 PHE HIS ILE ALA LEU GLY GLU VAL LEU PHE GLN HET ZN A 401 1 HET OLA A 402 36 HET OLA A 403 28 HET OLA A 404 30 HET OLA A 405 54 HET OLA A 406 36 HET OLA A 407 54 HET OLA A 408 20 HET OLA A 409 26 HET OLA A 410 42 HET OLA A 411 30 HET OLA A 412 54 HET F7N A 413 68 HET OLA B 401 26 HET OLA B 402 36 HET OLA B 403 54 HET F7N B 404 68 HETNAM ZN ZINC ION HETNAM OLA OLEIC ACID HETNAM F7N [(3~{S},4~{S})-3-METHOXYOXAN-4-YL]-[(1~{R},3~{S})-3- HETNAM 2 F7N PROPAN-2-YL-3-[[3-(TRIFLUOROMETHYL)-7,8-DIHYDRO-5~{H}- HETNAM 3 F7N 1,6-NAPHTHYRIDIN-6-YL]CARBONYL]CYCLOPENTYL]AZANIUM FORMUL 3 ZN ZN 2+ FORMUL 4 OLA 14(C18 H34 O2) FORMUL 15 F7N 2(C24 H35 F3 N3 O3 1+) FORMUL 20 HOH *64(H2 O) HELIX 1 AA1 ASP A 36 TYR A 70 1 35 HELIX 2 AA2 CYS A 75 ILE A 93 1 19 HELIX 3 AA3 THR A 94 ASN A 104 1 11 HELIX 4 AA4 PHE A 108 HIS A 144 1 37 HELIX 5 AA5 VAL A 154 PHE A 178 1 25 HELIX 6 AA6 PRO A 195 LEU A 211 1 17 HELIX 7 AA7 LEU A 211 LEU A 229 1 19 HELIX 8 AA8 ASP A 250 GLY A 254 5 5 HELIX 9 AA9 ASP A 260 ILE A 264 5 5 HELIX 10 AB1 GLY A 276 ASP A 278 5 3 HELIX 11 AB2 ASP A 292 PHE A 319 1 28 HELIX 12 AB3 PHE A 319 GLY A 324 1 6 HELIX 13 AB4 ASN A 327 THR A 347 1 21 HELIX 14 AB5 HIS A 348 CYS A 350 5 3 HELIX 15 AB6 ILE A 351 GLY A 360 1 10 HELIX 16 AB7 GLY A 360 GLU A 373 1 14 HELIX 17 AB8 ASP B 36 TYR B 70 1 35 HELIX 18 AB9 CYS B 75 ILE B 93 1 19 HELIX 19 AC1 THR B 94 ASN B 104 1 11 HELIX 20 AC2 PHE B 108 VAL B 143 1 36 HELIX 21 AC3 ARG B 152 PHE B 178 1 27 HELIX 22 AC4 PRO B 195 LEU B 211 1 17 HELIX 23 AC5 LEU B 211 LEU B 229 1 19 HELIX 24 AC6 VAL B 242 PHE B 268 1 27 HELIX 25 AC7 PHE B 268 GLY B 273 1 6 HELIX 26 AC8 ASN B 276 THR B 296 1 21 HELIX 27 AC9 HIS B 297 CYS B 299 5 3 HELIX 28 AD1 ILE B 300 VAL B 308 1 9 SHEET 1 AA1 2 THR A 179 GLU A 184 0 SHEET 2 AA1 2 VAL A 187 PRO A 192 -1 O VAL A 187 N GLU A 184 SHEET 1 AA2 2 LEU A 230 MET A 232 0 SHEET 2 AA2 2 VAL B 146 ALA B 148 -1 O PHE B 147 N ARG A 231 SHEET 1 AA3 3 ILE A 243 TYR A 244 0 SHEET 2 AA3 3 TYR A 235 CYS A 237 -1 N TYR A 235 O TYR A 244 SHEET 3 AA3 3 PHE A 280 GLU A 282 -1 O GLU A 281 N THR A 236 SHEET 1 AA4 2 THR B 179 GLU B 184 0 SHEET 2 AA4 2 VAL B 187 PRO B 192 -1 O VAL B 189 N GLN B 182 SSBOND 1 CYS A 113 CYS A 190 1555 1555 2.03 SSBOND 2 CYS B 113 CYS B 190 1555 1555 2.04 LINK SG CYS A 237 ZN ZN A 401 1555 1555 2.45 LINK SG CYS A 240 ZN ZN A 401 1555 1555 2.56 LINK SG CYS A 270 ZN ZN A 401 1555 1555 2.18 LINK SG CYS A 273 ZN ZN A 401 1555 1555 2.42 CRYST1 54.570 64.550 131.200 90.00 91.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018325 0.000000 0.000381 0.00000 SCALE2 0.000000 0.015492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007624 0.00000