data_6GQ5 # _entry.id 6GQ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GQ5 pdb_00006gq5 10.2210/pdb6gq5/pdb WWPDB D_1200010405 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-19 2 'Structure model' 1 1 2019-12-25 3 'Structure model' 1 2 2020-07-01 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' reflns_shell 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_reflns_shell.percent_possible_all' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_ASTM' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_DOI' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation.year' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GQ5 _pdbx_database_status.recvd_initial_deposition_date 2018-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Landau, M.' 1 0000-0002-1743-3430 'Tayeb-Fligelman, E.' 2 0000-0001-9318-5400 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 301 _citation.page_last 313.e6 _citation.title 'Staphylococcus aureus PSM alpha 3 Cross-alpha Fibril Polymorphism and Determinants of Cytotoxicity.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2019.12.006 _citation.pdbx_database_id_PubMed 31918959 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tayeb-Fligelman, E.' 1 ? primary 'Salinas, N.' 2 ? primary 'Tabachnikov, O.' 3 ? primary 'Landau, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Phenol-soluble modulin alpha 3 peptide' 2569.069 1 ? L15A 'PSMalpha3 full-length mutant (residues 1-22)' ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 3 water nat water 18.015 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MEFVAKLFKFFKDLAGKFLGNN _entity_poly.pdbx_seq_one_letter_code_can MEFVAKLFKFFKDLAGKFLGNN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 PHE n 1 4 VAL n 1 5 ALA n 1 6 LYS n 1 7 LEU n 1 8 PHE n 1 9 LYS n 1 10 PHE n 1 11 PHE n 1 12 LYS n 1 13 ASP n 1 14 LEU n 1 15 ALA n 1 16 GLY n 1 17 LYS n 1 18 PHE n 1 19 LEU n 1 20 GLY n 1 21 ASN n 1 22 ASN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific ' Staphylococcus aureus RF122' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 273036 _pdbx_entity_src_syn.details 'PSMalpha3 L15A mutant, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ASN 22 22 22 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD 1 101 1 MRD MRD A . C 3 HOH 1 201 7 HOH HOH A . C 3 HOH 2 202 2 HOH HOH A . C 3 HOH 3 203 20 HOH HOH A . C 3 HOH 4 204 15 HOH HOH A . C 3 HOH 5 205 3 HOH HOH A . C 3 HOH 6 206 22 HOH HOH A . C 3 HOH 7 207 12 HOH HOH A . C 3 HOH 8 208 21 HOH HOH A . C 3 HOH 9 209 23 HOH HOH A . C 3 HOH 10 210 10 HOH HOH A . C 3 HOH 11 211 16 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 1 ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 2 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 105.870 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6GQ5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.410 _cell.length_a_esd ? _cell.length_b 10.670 _cell.length_b_esd ? _cell.length_c 29.600 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GQ5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 26.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Reservoir contained 0.1 M CAPS pH 10.5, 40% v/v 2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER R 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9677 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE MASSIF-3' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9677 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MASSIF-3 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 20.678 _reflns.entry_id 6GQ5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 17.470 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2854 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.680 _reflns.pdbx_Rmerge_I_obs 0.137 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.090 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.957 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.171 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.500 1.540 ? 1.560 ? ? ? ? 207 95.000 ? ? ? ? 0.559 ? ? ? ? ? ? ? ? 2.652 ? ? ? ? 0.692 ? ? 1 1 0.851 ? 1.540 1.580 ? 1.680 ? ? ? ? 205 99.000 ? ? ? ? 0.476 ? ? ? ? ? ? ? ? 2.585 ? ? ? ? 0.603 ? ? 2 1 0.841 ? 1.580 1.630 ? 1.820 ? ? ? ? 181 97.800 ? ? ? ? 0.492 ? ? ? ? ? ? ? ? 2.751 ? ? ? ? 0.611 ? ? 3 1 0.853 ? 1.630 1.680 ? 2.080 ? ? ? ? 204 97.100 ? ? ? ? 0.467 ? ? ? ? ? ? ? ? 2.725 ? ? ? ? 0.598 ? ? 4 1 0.682 ? 1.680 1.730 ? 2.750 ? ? ? ? 190 100 ? ? ? ? 0.372 ? ? ? ? ? ? ? ? 2.758 ? ? ? ? 0.463 ? ? 5 1 0.775 ? 1.730 1.790 ? 2.640 ? ? ? ? 199 96.600 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? 2.749 ? ? ? ? 0.438 ? ? 6 1 0.886 ? 1.790 1.860 ? 2.830 ? ? ? ? 158 99.400 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 2.595 ? ? ? ? 0.424 ? ? 7 1 0.815 ? 1.860 1.940 ? 3.420 ? ? ? ? 161 97.000 ? ? ? ? 0.254 ? ? ? ? ? ? ? ? 2.708 ? ? ? ? 0.318 ? ? 8 1 0.896 ? 1.940 2.020 ? 4.110 ? ? ? ? 167 96.000 ? ? ? ? 0.218 ? ? ? ? ? ? ? ? 2.820 ? ? ? ? 0.268 ? ? 9 1 0.915 ? 2.020 2.120 ? 5.120 ? ? ? ? 158 97.500 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? 2.709 ? ? ? ? 0.225 ? ? 10 1 0.931 ? 2.120 2.240 ? 5.250 ? ? ? ? 148 94.900 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 2.588 ? ? ? ? 0.197 ? ? 11 1 0.937 ? 2.240 2.370 ? 6.020 ? ? ? ? 132 92.300 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 2.523 ? ? ? ? 0.206 ? ? 12 1 0.929 ? 2.370 2.540 ? 5.540 ? ? ? ? 118 86.800 ? ? ? ? 0.201 ? ? ? ? ? ? ? ? 2.314 ? ? ? ? 0.245 ? ? 13 1 0.898 ? 2.540 2.740 ? 6.500 ? ? ? ? 129 97.000 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 2.853 ? ? ? ? 0.176 ? ? 14 1 0.946 ? 2.740 3.000 ? 6.660 ? ? ? ? 105 98.100 ? ? ? ? 0.124 ? ? ? ? ? ? ? ? 2.733 ? ? ? ? 0.153 ? ? 15 1 0.975 ? 3.000 3.360 ? 7.510 ? ? ? ? 114 96.600 ? ? ? ? 0.128 ? ? ? ? ? ? ? ? 2.877 ? ? ? ? 0.158 ? ? 16 1 0.948 ? 3.360 3.870 ? 7.380 ? ? ? ? 93 97.900 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 2.591 ? ? ? ? 0.108 ? ? 17 1 0.992 ? 3.870 4.750 ? 7.840 ? ? ? ? 83 94.300 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 2.723 ? ? ? ? 0.110 ? ? 18 1 0.980 ? 4.750 6.710 ? 7.850 ? ? ? ? 61 93.800 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 2.754 ? ? ? ? 0.097 ? ? 19 1 0.991 ? 6.710 17.470 ? 6.990 ? ? ? ? 41 87.200 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 2.293 ? ? ? ? 0.055 ? ? 20 1 0.998 ? # _refine.aniso_B[1][1] 2.0100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.9400 _refine.aniso_B[2][2] -0.3000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.9300 _refine.B_iso_max 46.490 _refine.B_iso_mean 18.7140 _refine.B_iso_min 8.730 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9190 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GQ5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 17.4700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2568 _refine.ls_number_reflns_R_free 286 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.4500 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1995 _refine.ls_R_factor_R_free 0.2449 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1943 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5I55 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1030 _refine.pdbx_overall_ESU_R_Free 0.1080 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.2720 _refine.overall_SU_ML 0.0810 _refine.overall_SU_R_Cruickshank_DPI 0.1032 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 17.4700 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 201 _refine_hist.pdbx_number_residues_total 22 _refine_hist.pdbx_B_iso_mean_ligand 41.26 _refine_hist.pdbx_B_iso_mean_solvent 23.33 _refine_hist.pdbx_number_atoms_protein 182 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.019 0.020 193 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.049 0.020 197 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.692 2.005 255 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.671 3.000 452 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 2.581 5.000 21 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 41.488 24.444 9 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.094 15.000 36 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.096 0.200 26 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 202 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.023 0.020 46 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.6760 _refine_ls_shell.number_reflns_all 792 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_R_work 713 _refine_ls_shell.percent_reflns_obs 97.4200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3610 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3340 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6GQ5 _struct.title 'Crystal Structure of the PSMalpha3 Peptide Mutant L15A Forming Cross-Alpha Amyloid-like Fibril' _struct.pdbx_model_details 'S. aureus' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GQ5 _struct_keywords.text 'cross-alpha, fibril, amyloid, mating alpha-helical sheets, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PSMA3_STAAB _struct_ref.pdbx_db_accession P0C807 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MEFVAKLFKFFKDLLGKFLGNN _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GQ5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C807 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6GQ5 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 15 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P0C807 _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 15 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 15 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 A,B,C 1 5 A,B,C 1 6 A,B,C 1 7 A,B,C 1 8 A,B,C 1 9 A,B,C 1 10 A,B,C 1 11 A,B,C 1 12 A,B,C 1 13 A,B,C 1 14 A,B,C 1 15 A,B,C 1 16 A,B,C 1 17 A,B,C 1 18 A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'Fibrils were observed by TEM and X-ray fibril diffraction' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10.6700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 21.3400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 32.0100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_595 x,y+4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 42.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -10.6700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -21.3400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_525 x,y-3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -32.0100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_515 x,y-4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -42.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10 'crystal symmetry operation' 2_414 -x-1,y-7/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 -37.3450000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 11 'crystal symmetry operation' 2_424 -x-1,y-5/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 -26.6750000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 12 'crystal symmetry operation' 2_434 -x-1,y-3/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 -16.0050000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 13 'crystal symmetry operation' 2_444 -x-1,y-1/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 -5.3350000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 14 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 5.3350000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 15 'crystal symmetry operation' 2_464 -x-1,y+3/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 16.0050000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 16 'crystal symmetry operation' 2_474 -x-1,y+5/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 26.6750000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 17 'crystal symmetry operation' 2_484 -x-1,y+7/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 37.3450000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 18 'crystal symmetry operation' 2_494 -x-1,y+9/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -20.3157138081 0.0000000000 1.0000000000 0.0000000000 48.0150000000 0.0000000000 0.0000000000 -1.0000000000 -28.4717848237 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id MET _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 20 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id MET _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 20 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MRD _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'binding site for residue MRD A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ALA A 15 ? ALA A 15 . ? 1_555 ? 2 AC1 2 PHE A 18 ? PHE A 18 . ? 1_555 ? # _pdbx_phasing_MR.entry_id 6GQ5 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing 0.000 _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLU N N N N 47 GLU CA C N S 48 GLU C C N N 49 GLU O O N N 50 GLU CB C N N 51 GLU CG C N N 52 GLU CD C N N 53 GLU OE1 O N N 54 GLU OE2 O N N 55 GLU OXT O N N 56 GLU H H N N 57 GLU H2 H N N 58 GLU HA H N N 59 GLU HB2 H N N 60 GLU HB3 H N N 61 GLU HG2 H N N 62 GLU HG3 H N N 63 GLU HE2 H N N 64 GLU HXT H N N 65 GLY N N N N 66 GLY CA C N N 67 GLY C C N N 68 GLY O O N N 69 GLY OXT O N N 70 GLY H H N N 71 GLY H2 H N N 72 GLY HA2 H N N 73 GLY HA3 H N N 74 GLY HXT H N N 75 HOH O O N N 76 HOH H1 H N N 77 HOH H2 H N N 78 LEU N N N N 79 LEU CA C N S 80 LEU C C N N 81 LEU O O N N 82 LEU CB C N N 83 LEU CG C N N 84 LEU CD1 C N N 85 LEU CD2 C N N 86 LEU OXT O N N 87 LEU H H N N 88 LEU H2 H N N 89 LEU HA H N N 90 LEU HB2 H N N 91 LEU HB3 H N N 92 LEU HG H N N 93 LEU HD11 H N N 94 LEU HD12 H N N 95 LEU HD13 H N N 96 LEU HD21 H N N 97 LEU HD22 H N N 98 LEU HD23 H N N 99 LEU HXT H N N 100 LYS N N N N 101 LYS CA C N S 102 LYS C C N N 103 LYS O O N N 104 LYS CB C N N 105 LYS CG C N N 106 LYS CD C N N 107 LYS CE C N N 108 LYS NZ N N N 109 LYS OXT O N N 110 LYS H H N N 111 LYS H2 H N N 112 LYS HA H N N 113 LYS HB2 H N N 114 LYS HB3 H N N 115 LYS HG2 H N N 116 LYS HG3 H N N 117 LYS HD2 H N N 118 LYS HD3 H N N 119 LYS HE2 H N N 120 LYS HE3 H N N 121 LYS HZ1 H N N 122 LYS HZ2 H N N 123 LYS HZ3 H N N 124 LYS HXT H N N 125 MET N N N N 126 MET CA C N S 127 MET C C N N 128 MET O O N N 129 MET CB C N N 130 MET CG C N N 131 MET SD S N N 132 MET CE C N N 133 MET OXT O N N 134 MET H H N N 135 MET H2 H N N 136 MET HA H N N 137 MET HB2 H N N 138 MET HB3 H N N 139 MET HG2 H N N 140 MET HG3 H N N 141 MET HE1 H N N 142 MET HE2 H N N 143 MET HE3 H N N 144 MET HXT H N N 145 MRD C1 C N N 146 MRD C2 C N N 147 MRD O2 O N N 148 MRD CM C N N 149 MRD C3 C N N 150 MRD C4 C N R 151 MRD O4 O N N 152 MRD C5 C N N 153 MRD H1C1 H N N 154 MRD H1C2 H N N 155 MRD H1C3 H N N 156 MRD H2 H N N 157 MRD HMC1 H N N 158 MRD HMC2 H N N 159 MRD HMC3 H N N 160 MRD H3C1 H N N 161 MRD H3C2 H N N 162 MRD H4 H N N 163 MRD HA H N N 164 MRD H5C1 H N N 165 MRD H5C2 H N N 166 MRD H5C3 H N N 167 PHE N N N N 168 PHE CA C N S 169 PHE C C N N 170 PHE O O N N 171 PHE CB C N N 172 PHE CG C Y N 173 PHE CD1 C Y N 174 PHE CD2 C Y N 175 PHE CE1 C Y N 176 PHE CE2 C Y N 177 PHE CZ C Y N 178 PHE OXT O N N 179 PHE H H N N 180 PHE H2 H N N 181 PHE HA H N N 182 PHE HB2 H N N 183 PHE HB3 H N N 184 PHE HD1 H N N 185 PHE HD2 H N N 186 PHE HE1 H N N 187 PHE HE2 H N N 188 PHE HZ H N N 189 PHE HXT H N N 190 VAL N N N N 191 VAL CA C N S 192 VAL C C N N 193 VAL O O N N 194 VAL CB C N N 195 VAL CG1 C N N 196 VAL CG2 C N N 197 VAL OXT O N N 198 VAL H H N N 199 VAL H2 H N N 200 VAL HA H N N 201 VAL HB H N N 202 VAL HG11 H N N 203 VAL HG12 H N N 204 VAL HG13 H N N 205 VAL HG21 H N N 206 VAL HG22 H N N 207 VAL HG23 H N N 208 VAL HXT H N N 209 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLU N CA sing N N 44 GLU N H sing N N 45 GLU N H2 sing N N 46 GLU CA C sing N N 47 GLU CA CB sing N N 48 GLU CA HA sing N N 49 GLU C O doub N N 50 GLU C OXT sing N N 51 GLU CB CG sing N N 52 GLU CB HB2 sing N N 53 GLU CB HB3 sing N N 54 GLU CG CD sing N N 55 GLU CG HG2 sing N N 56 GLU CG HG3 sing N N 57 GLU CD OE1 doub N N 58 GLU CD OE2 sing N N 59 GLU OE2 HE2 sing N N 60 GLU OXT HXT sing N N 61 GLY N CA sing N N 62 GLY N H sing N N 63 GLY N H2 sing N N 64 GLY CA C sing N N 65 GLY CA HA2 sing N N 66 GLY CA HA3 sing N N 67 GLY C O doub N N 68 GLY C OXT sing N N 69 GLY OXT HXT sing N N 70 HOH O H1 sing N N 71 HOH O H2 sing N N 72 LEU N CA sing N N 73 LEU N H sing N N 74 LEU N H2 sing N N 75 LEU CA C sing N N 76 LEU CA CB sing N N 77 LEU CA HA sing N N 78 LEU C O doub N N 79 LEU C OXT sing N N 80 LEU CB CG sing N N 81 LEU CB HB2 sing N N 82 LEU CB HB3 sing N N 83 LEU CG CD1 sing N N 84 LEU CG CD2 sing N N 85 LEU CG HG sing N N 86 LEU CD1 HD11 sing N N 87 LEU CD1 HD12 sing N N 88 LEU CD1 HD13 sing N N 89 LEU CD2 HD21 sing N N 90 LEU CD2 HD22 sing N N 91 LEU CD2 HD23 sing N N 92 LEU OXT HXT sing N N 93 LYS N CA sing N N 94 LYS N H sing N N 95 LYS N H2 sing N N 96 LYS CA C sing N N 97 LYS CA CB sing N N 98 LYS CA HA sing N N 99 LYS C O doub N N 100 LYS C OXT sing N N 101 LYS CB CG sing N N 102 LYS CB HB2 sing N N 103 LYS CB HB3 sing N N 104 LYS CG CD sing N N 105 LYS CG HG2 sing N N 106 LYS CG HG3 sing N N 107 LYS CD CE sing N N 108 LYS CD HD2 sing N N 109 LYS CD HD3 sing N N 110 LYS CE NZ sing N N 111 LYS CE HE2 sing N N 112 LYS CE HE3 sing N N 113 LYS NZ HZ1 sing N N 114 LYS NZ HZ2 sing N N 115 LYS NZ HZ3 sing N N 116 LYS OXT HXT sing N N 117 MET N CA sing N N 118 MET N H sing N N 119 MET N H2 sing N N 120 MET CA C sing N N 121 MET CA CB sing N N 122 MET CA HA sing N N 123 MET C O doub N N 124 MET C OXT sing N N 125 MET CB CG sing N N 126 MET CB HB2 sing N N 127 MET CB HB3 sing N N 128 MET CG SD sing N N 129 MET CG HG2 sing N N 130 MET CG HG3 sing N N 131 MET SD CE sing N N 132 MET CE HE1 sing N N 133 MET CE HE2 sing N N 134 MET CE HE3 sing N N 135 MET OXT HXT sing N N 136 MRD C1 C2 sing N N 137 MRD C1 H1C1 sing N N 138 MRD C1 H1C2 sing N N 139 MRD C1 H1C3 sing N N 140 MRD C2 O2 sing N N 141 MRD C2 CM sing N N 142 MRD C2 C3 sing N N 143 MRD O2 H2 sing N N 144 MRD CM HMC1 sing N N 145 MRD CM HMC2 sing N N 146 MRD CM HMC3 sing N N 147 MRD C3 C4 sing N N 148 MRD C3 H3C1 sing N N 149 MRD C3 H3C2 sing N N 150 MRD C4 O4 sing N N 151 MRD C4 C5 sing N N 152 MRD C4 H4 sing N N 153 MRD O4 HA sing N N 154 MRD C5 H5C1 sing N N 155 MRD C5 H5C2 sing N N 156 MRD C5 H5C3 sing N N 157 PHE N CA sing N N 158 PHE N H sing N N 159 PHE N H2 sing N N 160 PHE CA C sing N N 161 PHE CA CB sing N N 162 PHE CA HA sing N N 163 PHE C O doub N N 164 PHE C OXT sing N N 165 PHE CB CG sing N N 166 PHE CB HB2 sing N N 167 PHE CB HB3 sing N N 168 PHE CG CD1 doub Y N 169 PHE CG CD2 sing Y N 170 PHE CD1 CE1 sing Y N 171 PHE CD1 HD1 sing N N 172 PHE CD2 CE2 doub Y N 173 PHE CD2 HD2 sing N N 174 PHE CE1 CZ doub Y N 175 PHE CE1 HE1 sing N N 176 PHE CE2 CZ sing Y N 177 PHE CE2 HE2 sing N N 178 PHE CZ HZ sing N N 179 PHE OXT HXT sing N N 180 VAL N CA sing N N 181 VAL N H sing N N 182 VAL N H2 sing N N 183 VAL CA C sing N N 184 VAL CA CB sing N N 185 VAL CA HA sing N N 186 VAL C O doub N N 187 VAL C OXT sing N N 188 VAL CB CG1 sing N N 189 VAL CB CG2 sing N N 190 VAL CB HB sing N N 191 VAL CG1 HG11 sing N N 192 VAL CG1 HG12 sing N N 193 VAL CG1 HG13 sing N N 194 VAL CG2 HG21 sing N N 195 VAL CG2 HG22 sing N N 196 VAL CG2 HG23 sing N N 197 VAL OXT HXT sing N N 198 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5I55 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6GQ5 _atom_sites.fract_transf_matrix[1][1] 0.035199 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010007 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.093721 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035122 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_