HEADER ALLERGEN 07-JUN-18 6GQ9 TITLE SOLUTION STRUCTURE OF THE HAZEL ALLERGEN COR A 1.0401 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ALLERGEN COR A 1.0401; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYLUS AVELLANA; SOURCE 3 ORGANISM_COMMON: EUROPEAN HAZEL; SOURCE 4 ORGANISM_TAXID: 13451; SOURCE 5 GENE: CORA1.0401; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PR-10 ALLERGEN, HYDROPHOBIC POCKET, BET V 1 HOMOLOGUE, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.P.JACOB,K.SCHWEIMER,C.SEUTTER VON LOETZEN,B.M.WOEHRL REVDAT 2 03-JUL-19 6GQ9 1 JRNL REVDAT 1 19-JUN-19 6GQ9 0 JRNL AUTH T.JACOB,C.S.VON LOETZEN,A.REUTER,U.LACHER,D.SCHILLER, JRNL AUTH 2 R.SCHOBERT,V.MAHLER,S.VIETHS,P.ROSCH,K.SCHWEIMER,B.M.WOHRL JRNL TITL IDENTIFICATION OF A NATURAL LIGAND OF THE HAZEL ALLERGEN COR JRNL TITL 2 A 1. JRNL REF SCI REP V. 9 8714 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31213622 JRNL DOI 10.1038/S41598-019-44999-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010384. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-13C; U-15N] COR A REMARK 210 1.0401, 2 MM DTT, 10 MM SODIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HN(COCA)CB; 3D 1H- REMARK 210 15N NOESY; 3D (H)NNH NOESY HSQC; REMARK 210 3D 1H-13C NOESY; 3D C(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D (H)CCH-NOESY HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 1000 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 240 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 102 O THR A 119 1.57 REMARK 500 O LEU A 19 H PHE A 23 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 74 146.40 -178.36 REMARK 500 1 LEU A 92 -74.42 62.51 REMARK 500 1 THR A 95 17.71 55.73 REMARK 500 2 ALA A 35 165.64 -47.89 REMARK 500 2 PRO A 36 -162.61 -70.35 REMARK 500 2 PHE A 59 -39.83 -140.83 REMARK 500 2 LEU A 92 -89.60 54.77 REMARK 500 3 PHE A 59 -70.02 -155.41 REMARK 500 3 GLU A 74 139.79 -176.36 REMARK 500 3 LEU A 92 -71.39 63.16 REMARK 500 3 THR A 95 16.14 57.57 REMARK 500 4 GLU A 74 144.31 -179.12 REMARK 500 4 LEU A 92 -75.27 62.39 REMARK 500 5 VAL A 13 90.67 -66.20 REMARK 500 5 ALA A 35 51.19 75.98 REMARK 500 5 GLU A 74 143.49 -173.59 REMARK 500 5 LEU A 92 -81.56 70.35 REMARK 500 5 THR A 95 16.65 58.17 REMARK 500 6 VAL A 13 91.18 -68.59 REMARK 500 6 GLU A 61 123.24 60.75 REMARK 500 6 LYS A 66 74.57 64.14 REMARK 500 6 LEU A 92 -85.38 61.70 REMARK 500 6 HIS A 110 -89.89 57.69 REMARK 500 7 VAL A 13 91.11 -64.99 REMARK 500 7 GLN A 37 -165.28 43.73 REMARK 500 7 HIS A 38 76.15 59.26 REMARK 500 7 ASN A 63 56.10 -101.71 REMARK 500 7 LEU A 92 -84.11 62.37 REMARK 500 8 GLU A 74 142.32 -174.85 REMARK 500 8 LEU A 92 -70.80 63.32 REMARK 500 8 THR A 95 14.79 59.51 REMARK 500 9 PRO A 36 -163.45 -69.58 REMARK 500 9 ALA A 60 -149.96 -69.65 REMARK 500 9 HIS A 94 74.05 -68.86 REMARK 500 9 THR A 95 24.31 45.69 REMARK 500 10 PHE A 65 77.50 61.47 REMARK 500 10 GLU A 74 144.67 -176.52 REMARK 500 10 LEU A 92 -92.94 45.47 REMARK 500 11 PRO A 36 -161.74 -70.16 REMARK 500 11 PHE A 65 66.59 -176.31 REMARK 500 11 GLU A 74 138.66 -178.89 REMARK 500 11 LEU A 92 -93.46 45.72 REMARK 500 12 LYS A 66 -74.43 -95.78 REMARK 500 12 GLU A 74 143.35 -173.56 REMARK 500 12 LEU A 92 -87.11 60.64 REMARK 500 12 TYR A 160 -93.14 51.58 REMARK 500 13 ALA A 10 113.52 -168.53 REMARK 500 13 VAL A 13 90.97 -65.43 REMARK 500 13 GLU A 64 -165.02 43.94 REMARK 500 13 GLU A 74 140.02 -176.65 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.24 SIDE CHAIN REMARK 500 2 ARG A 18 0.29 SIDE CHAIN REMARK 500 3 ARG A 18 0.28 SIDE CHAIN REMARK 500 4 ARG A 18 0.32 SIDE CHAIN REMARK 500 5 ARG A 18 0.29 SIDE CHAIN REMARK 500 6 ARG A 18 0.31 SIDE CHAIN REMARK 500 7 ARG A 18 0.31 SIDE CHAIN REMARK 500 8 ARG A 18 0.09 SIDE CHAIN REMARK 500 9 ARG A 18 0.28 SIDE CHAIN REMARK 500 10 ARG A 18 0.21 SIDE CHAIN REMARK 500 11 ARG A 18 0.29 SIDE CHAIN REMARK 500 12 ARG A 18 0.26 SIDE CHAIN REMARK 500 13 ARG A 18 0.31 SIDE CHAIN REMARK 500 14 ARG A 18 0.11 SIDE CHAIN REMARK 500 15 ARG A 18 0.32 SIDE CHAIN REMARK 500 16 ARG A 18 0.19 SIDE CHAIN REMARK 500 17 ARG A 18 0.32 SIDE CHAIN REMARK 500 18 ARG A 18 0.26 SIDE CHAIN REMARK 500 19 ARG A 18 0.19 SIDE CHAIN REMARK 500 20 ARG A 18 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34281 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE HAZEL ALLERGEN COR A 1.0401 DBREF 6GQ9 A 1 161 UNP Q9SWR4 Q9SWR4_CORAV 1 161 SEQRES 1 A 161 MET GLY VAL PHE CYS TYR GLU ASP GLU ALA THR SER VAL SEQRES 2 A 161 ILE PRO PRO ALA ARG LEU PHE LYS SER PHE VAL LEU ASP SEQRES 3 A 161 ALA ASP ASN LEU ILE PRO LYS VAL ALA PRO GLN HIS PHE SEQRES 4 A 161 THR SER ALA GLU ASN LEU GLU GLY ASN GLY GLY PRO GLY SEQRES 5 A 161 THR ILE LYS LYS ILE THR PHE ALA GLU GLY ASN GLU PHE SEQRES 6 A 161 LYS TYR MET LYS HIS LYS VAL GLU GLU ILE ASP HIS ALA SEQRES 7 A 161 ASN PHE LYS TYR CYS TYR SER ILE ILE GLU GLY GLY PRO SEQRES 8 A 161 LEU GLY HIS THR LEU GLU LYS ILE SER TYR GLU ILE LYS SEQRES 9 A 161 MET ALA ALA ALA PRO HIS GLY GLY GLY SER ILE LEU LYS SEQRES 10 A 161 ILE THR SER LYS TYR HIS THR LYS GLY ASN ALA SER ILE SEQRES 11 A 161 ASN GLU GLU GLU ILE LYS ALA GLY LYS GLU LYS ALA ALA SEQRES 12 A 161 GLY LEU PHE LYS ALA VAL GLU ALA TYR LEU LEU ALA HIS SEQRES 13 A 161 PRO ASP ALA TYR CYS HELIX 1 AA1 PRO A 15 VAL A 24 1 10 HELIX 2 AA2 ASP A 26 ALA A 35 1 10 HELIX 3 AA3 ASN A 131 HIS A 156 1 26 SHEET 1 AA1 7 VAL A 3 SER A 12 0 SHEET 2 AA1 7 SER A 114 THR A 124 -1 O ILE A 118 N ASP A 8 SHEET 3 AA1 7 LEU A 96 ALA A 107 -1 N GLU A 102 O THR A 119 SHEET 4 AA1 7 LYS A 81 GLU A 88 -1 N TYR A 84 O TYR A 101 SHEET 5 AA1 7 LYS A 69 ASP A 76 -1 N GLU A 74 O CYS A 83 SHEET 6 AA1 7 ILE A 54 THR A 58 -1 N LYS A 55 O HIS A 70 SHEET 7 AA1 7 SER A 41 GLU A 46 -1 N GLU A 43 O LYS A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1