HEADER CHAPERONE 08-JUN-18 6GQR TITLE STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN TITLE 2 (HSP90-NTD) IN COMPLEX WITH AMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN HSP 90-ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEAT SHOCK 86 KDA,HSP86,LIPOPOLYSACCHARIDE-ASSOCIATED COMPND 5 PROTEIN 2,LPS-ASSOCIATED PROTEIN 2,RENAL CARCINOMA ANTIGEN NY-REN-38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSP90AA1, HSP90A, HSPC1, HSPCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CHAPERONE, HSP90, NTD, ALPHA, COMPLEX, AMPCPP, NUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR G.TASSONE,C.POZZI,S.MANGANI,M.BOTTA REVDAT 3 17-JAN-24 6GQR 1 COMPND REVDAT 2 10-OCT-18 6GQR 1 COMPND JRNL REVDAT 1 03-OCT-18 6GQR 0 JRNL AUTH G.TASSONE,S.MANGANI,M.BOTTA,C.POZZI JRNL TITL PROBING THE ROLE OF ARG97 IN HEAT SHOCK PROTEIN 90 JRNL TITL 2 N-TERMINAL DOMAIN FROM THE PARASITE LEISHMANIA BRAZILIENSIS JRNL TITL 3 THROUGH SITE-DIRECTED MUTAGENESIS ON THE HUMAN COUNTERPART. JRNL REF BIOCHIM BIOPHYS ACTA V.1866 1190 2018 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 30248409 JRNL DOI 10.1016/J.BBAPAP.2018.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1813 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2458 ; 2.111 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 7.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;34.497 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;16.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1320 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 900 ; 1.831 ; 2.287 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1123 ; 2.762 ; 3.409 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 913 ; 2.441 ; 2.447 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2734 ; 5.671 ;30.848 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3611 0.7883 13.4299 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0191 REMARK 3 T33: 0.0399 T12: 0.0041 REMARK 3 T13: 0.0149 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.2404 L22: 0.0319 REMARK 3 L33: 0.4695 L12: 0.0142 REMARK 3 L13: 0.3353 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.0672 S13: 0.0095 REMARK 3 S21: -0.0150 S22: -0.0074 S23: -0.0343 REMARK 3 S31: -0.0121 S32: -0.0933 S33: 0.0196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 48.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 25 % WT/VOL PEG 2000, REMARK 280 200MM MGCL2, 100 MM SODIUM CACODYLATE, PH 6.5 SAMPLE: HSP90A-NTD REMARK 280 20 MG/ML, 10 MM AMPCPP, 500 MM NACL, 20 MM TRIS, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.05850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 225 REMARK 465 ARG A 226 REMARK 465 ASP A 227 REMARK 465 LYS A 228 REMARK 465 GLU A 229 REMARK 465 VAL A 230 REMARK 465 SER A 231 REMARK 465 ASP A 232 REMARK 465 ASP A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 74 CE NZ REMARK 470 GLN A 133 CD OE1 NE2 REMARK 470 GLU A 178 CD OE1 OE2 REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 PHE A 213 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 119.36 -164.13 REMARK 500 GLU A 3 33.54 -75.07 REMARK 500 GLU A 4 6.80 -157.34 REMARK 500 ASP A 66 85.23 -170.43 REMARK 500 LEU A 107 61.06 -113.15 REMARK 500 ALA A 166 -153.33 71.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 590 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 10.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 51 OD1 REMARK 620 2 APC A 302 O1B 97.7 REMARK 620 3 APC A 302 O1A 92.6 93.1 REMARK 620 4 HOH A 441 O 88.6 168.7 95.9 REMARK 620 5 HOH A 444 O 164.3 90.9 100.0 81.0 REMARK 620 6 HOH A 464 O 82.2 91.9 173.3 79.7 84.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GP4 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) VARIANT K112A REMARK 900 RELATED ID: 6GPR RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) IN COMPLEX WITH CAMP REMARK 900 RELATED ID: 6GPW RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) REMARK 900 RELATED ID: 6GPT RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) IN COMPLEX WITH AMPCP REMARK 900 RELATED ID: 6GPY RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) IN COMPLEX WITH AMPPNP REMARK 900 RELATED ID: 6GQ6 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) IN COMPLEX WITH ADP DBREF 6GQR A 1 236 UNP P07900 HS90A_HUMAN 1 236 SEQADV 6GQR MET A -19 UNP P07900 INITIATING METHIONINE SEQADV 6GQR GLY A -18 UNP P07900 EXPRESSION TAG SEQADV 6GQR SER A -17 UNP P07900 EXPRESSION TAG SEQADV 6GQR SER A -16 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A -15 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A -14 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A -13 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A -12 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A -11 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A -10 UNP P07900 EXPRESSION TAG SEQADV 6GQR SER A -9 UNP P07900 EXPRESSION TAG SEQADV 6GQR SER A -8 UNP P07900 EXPRESSION TAG SEQADV 6GQR GLY A -7 UNP P07900 EXPRESSION TAG SEQADV 6GQR LEU A -6 UNP P07900 EXPRESSION TAG SEQADV 6GQR VAL A -5 UNP P07900 EXPRESSION TAG SEQADV 6GQR PRO A -4 UNP P07900 EXPRESSION TAG SEQADV 6GQR ARG A -3 UNP P07900 EXPRESSION TAG SEQADV 6GQR GLY A -2 UNP P07900 EXPRESSION TAG SEQADV 6GQR SER A -1 UNP P07900 EXPRESSION TAG SEQADV 6GQR HIS A 0 UNP P07900 EXPRESSION TAG SEQRES 1 A 256 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 256 LEU VAL PRO ARG GLY SER HIS MET PRO GLU GLU THR GLN SEQRES 3 A 256 THR GLN ASP GLN PRO MET GLU GLU GLU GLU VAL GLU THR SEQRES 4 A 256 PHE ALA PHE GLN ALA GLU ILE ALA GLN LEU MET SER LEU SEQRES 5 A 256 ILE ILE ASN THR PHE TYR SER ASN LYS GLU ILE PHE LEU SEQRES 6 A 256 ARG GLU LEU ILE SER ASN SER SER ASP ALA LEU ASP LYS SEQRES 7 A 256 ILE ARG TYR GLU SER LEU THR ASP PRO SER LYS LEU ASP SEQRES 8 A 256 SER GLY LYS GLU LEU HIS ILE ASN LEU ILE PRO ASN LYS SEQRES 9 A 256 GLN ASP ARG THR LEU THR ILE VAL ASP THR GLY ILE GLY SEQRES 10 A 256 MET THR LYS ALA ASP LEU ILE ASN ASN LEU GLY THR ILE SEQRES 11 A 256 ALA LYS SER GLY THR LYS ALA PHE MET GLU ALA LEU GLN SEQRES 12 A 256 ALA GLY ALA ASP ILE SER MET ILE GLY GLN PHE GLY VAL SEQRES 13 A 256 GLY PHE TYR SER ALA TYR LEU VAL ALA GLU LYS VAL THR SEQRES 14 A 256 VAL ILE THR LYS HIS ASN ASP ASP GLU GLN TYR ALA TRP SEQRES 15 A 256 GLU SER SER ALA GLY GLY SER PHE THR VAL ARG THR ASP SEQRES 16 A 256 THR GLY GLU PRO MET GLY ARG GLY THR LYS VAL ILE LEU SEQRES 17 A 256 HIS LEU LYS GLU ASP GLN THR GLU TYR LEU GLU GLU ARG SEQRES 18 A 256 ARG ILE LYS GLU ILE VAL LYS LYS HIS SER GLN PHE ILE SEQRES 19 A 256 GLY TYR PRO ILE THR LEU PHE VAL GLU LYS GLU ARG ASP SEQRES 20 A 256 LYS GLU VAL SER ASP ASP GLU ALA GLU HET MG A 301 1 HET APC A 302 31 HETNAM MG MAGNESIUM ION HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 APC C11 H18 N5 O12 P3 FORMUL 4 HOH *192(H2 O) HELIX 1 AA1 MET A 1 THR A 5 5 5 HELIX 2 AA2 GLN A 23 THR A 36 1 14 HELIX 3 AA3 ASN A 40 GLU A 42 5 3 HELIX 4 AA4 ILE A 43 THR A 65 1 23 HELIX 5 AA5 ASP A 66 GLY A 73 5 8 HELIX 6 AA6 THR A 99 LEU A 107 1 9 HELIX 7 AA7 GLY A 114 ALA A 124 1 11 HELIX 8 AA8 ASP A 127 PHE A 134 5 8 HELIX 9 AA9 VAL A 136 LEU A 143 5 8 HELIX 10 AB1 GLU A 192 LEU A 198 5 7 HELIX 11 AB2 GLU A 199 SER A 211 1 13 SHEET 1 AA1 8 VAL A 17 ALA A 21 0 SHEET 2 AA1 8 SER A 169 THR A 174 -1 O PHE A 170 N PHE A 20 SHEET 3 AA1 8 TYR A 160 SER A 164 -1 N ALA A 161 O ARG A 173 SHEET 4 AA1 8 ALA A 145 LYS A 153 -1 N VAL A 150 O TRP A 162 SHEET 5 AA1 8 GLY A 183 LEU A 190 -1 O HIS A 189 N LYS A 147 SHEET 6 AA1 8 THR A 88 ASP A 93 -1 N LEU A 89 O LEU A 188 SHEET 7 AA1 8 ILE A 78 ASN A 83 -1 N ASN A 79 O VAL A 92 SHEET 8 AA1 8 ILE A 218 LEU A 220 1 O THR A 219 N LEU A 80 LINK OD1 ASN A 51 MG MG A 301 1555 1555 2.03 LINK MG MG A 301 O1B APC A 302 1555 1555 2.05 LINK MG MG A 301 O1A APC A 302 1555 1555 1.84 LINK MG MG A 301 O HOH A 441 1555 1555 2.14 LINK MG MG A 301 O HOH A 444 1555 1555 2.05 LINK MG MG A 301 O HOH A 464 1555 1555 2.16 SITE 1 AC1 5 ASN A 51 APC A 302 HOH A 441 HOH A 444 SITE 2 AC1 5 HOH A 464 SITE 1 AC2 24 ASN A 51 ALA A 55 ASP A 93 MET A 98 SITE 2 AC2 24 ASN A 106 LEU A 107 GLY A 135 VAL A 136 SITE 3 AC2 24 GLY A 137 PHE A 138 THR A 184 MG A 301 SITE 4 AC2 24 HOH A 412 HOH A 417 HOH A 421 HOH A 434 SITE 5 AC2 24 HOH A 438 HOH A 439 HOH A 441 HOH A 444 SITE 6 AC2 24 HOH A 445 HOH A 464 HOH A 465 HOH A 500 CRYST1 54.076 44.117 54.512 90.00 116.41 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018492 0.000000 0.009183 0.00000 SCALE2 0.000000 0.022667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020482 0.00000