HEADER DNA 11-JUN-18 6GRC TITLE EUKARYOTIC JUNCTION-RESOLVING ENZYME GEN-1 BINDING WITH SODIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)- COMPND 7 3'); COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)- COMPND 12 3'); COMPND 13 CHAIN: R; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 6 GENE: CTHT_0007290; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: PICHIA KUDRIAVZEVII; SOURCE 12 ORGANISM_TAXID: 4909; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: PICHIA KUDRIAVZEVII; SOURCE 16 ORGANISM_TAXID: 4909 KEYWDS 4-WAY HOLIDAY JUNCTION, RESOLVASE, DNA RECOMBINATION, GEN1, H2TH, KEYWDS 2 POTASSIUM, DNA EXPDTA X-RAY DIFFRACTION AUTHOR D.M.J.LILLEY,Y.LIU,D.J.FREEMAN REVDAT 4 13-FEB-19 6GRC 1 COMPND SOURCE DBREF SEQADV REVDAT 3 28-NOV-18 6GRC 1 JRNL REVDAT 2 03-OCT-18 6GRC 1 JRNL REVDAT 1 26-SEP-18 6GRC 0 JRNL AUTH Y.LIU,A.D.FREEMAN,A.C.DECLAIS,D.M.J.LILLEY JRNL TITL A MONOVALENT ION IN THE DNA BINDING INTERFACE OF THE JRNL TITL 2 EUKARYOTIC JUNCTION-RESOLVING ENZYME GEN1. JRNL REF NUCLEIC ACIDS RES. V. 46 11089 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30247722 JRNL DOI 10.1093/NAR/GKY863 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2249 - 5.0994 1.00 2798 143 0.2213 0.2418 REMARK 3 2 5.0994 - 4.0482 1.00 2702 129 0.1877 0.2219 REMARK 3 3 4.0482 - 3.5366 1.00 2641 132 0.2105 0.2534 REMARK 3 4 3.5366 - 3.2133 1.00 2620 171 0.2378 0.2539 REMARK 3 5 3.2133 - 2.9830 1.00 2619 127 0.2643 0.2727 REMARK 3 6 2.9830 - 2.8072 1.00 2641 137 0.2857 0.3495 REMARK 3 7 2.8072 - 2.6666 1.00 2618 129 0.2904 0.3360 REMARK 3 8 2.6666 - 2.5505 1.00 2577 163 0.3255 0.3116 REMARK 3 9 2.5505 - 2.4524 0.99 2568 144 0.3636 0.3598 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3909 REMARK 3 ANGLE : 1.469 5416 REMARK 3 CHIRALITY : 0.077 600 REMARK 3 PLANARITY : 0.007 600 REMARK 3 DIHEDRAL : 20.461 1497 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.7238 24.3051 -15.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.5057 T22: 0.3503 REMARK 3 T33: 0.4007 T12: -0.0080 REMARK 3 T13: -0.0101 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.8376 L22: 1.4059 REMARK 3 L33: 1.7817 L12: -0.2891 REMARK 3 L13: -0.1643 L23: -0.1881 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.0632 S13: 0.1067 REMARK 3 S21: 0.1994 S22: -0.0247 S23: 0.2522 REMARK 3 S31: -0.2816 S32: -0.0811 S33: 0.0037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91376 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 49.215 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.10 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 18.80 REMARK 200 R MERGE FOR SHELL (I) : 2.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG10000 KCL MAGNESIUM CHLORIDE HEPES REMARK 280 BUFFER PH7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.91000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.82000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.82000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 83 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 PHE A 86 REMARK 465 LYS A 87 REMARK 465 ARG A 88 REMARK 465 ASN A 89 REMARK 465 ARG A 90 REMARK 465 ARG A 91 REMARK 465 SER A 92 REMARK 465 GLY A 93 REMARK 465 THR A 94 REMARK 465 GLY A 95 REMARK 465 ASN A 96 REMARK 465 ALA A 231 REMARK 465 TYR A 342 REMARK 465 VAL A 343 REMARK 465 SER A 344 REMARK 465 GLY A 345 REMARK 465 PRO A 346 REMARK 465 ARG A 347 REMARK 465 ILE A 348 REMARK 465 ASP A 349 REMARK 465 ASP A 350 REMARK 465 PRO A 351 REMARK 465 ASP A 352 REMARK 465 LEU A 353 REMARK 465 LYS A 354 REMARK 465 GLN A 401 REMARK 465 VAL A 402 REMARK 465 GLU A 403 REMARK 465 ALA A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 ARG A 407 REMARK 465 SER A 408 REMARK 465 GLY A 409 REMARK 465 LEU A 410 REMARK 465 ALA A 411 REMARK 465 LEU A 412 REMARK 465 ASN A 413 REMARK 465 SER A 414 REMARK 465 ASP A 415 REMARK 465 ASP A 416 REMARK 465 GLU A 417 REMARK 465 PHE A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 ASP A 421 REMARK 465 ILE A 422 REMARK 465 SER A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 GLN A 426 REMARK 465 LYS A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 LYS A 430 REMARK 465 LYS A 466 REMARK 465 GLY A 467 REMARK 465 ARG A 468 REMARK 465 ALA A 469 REMARK 465 LYS A 470 REMARK 465 GLU A 471 REMARK 465 ASP A 472 REMARK 465 LYS A 473 REMARK 465 THR A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 LYS A 477 REMARK 465 ALA A 478 REMARK 465 LYS A 479 REMARK 465 ARG A 480 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 LYS A 483 REMARK 465 ILE A 484 REMARK 465 ILE A 485 REMARK 465 GLN A 486 REMARK 465 SER A 487 REMARK 465 ASN A 488 REMARK 465 MSE A 489 REMARK 465 PRO A 490 REMARK 465 ALA A 491 REMARK 465 GLY A 492 REMARK 465 ALA A 493 REMARK 465 LEU A 494 REMARK 465 ASP A 495 REMARK 465 LYS A 496 REMARK 465 TYR A 497 REMARK 465 VAL A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 LYS A 502 REMARK 465 ASN A 503 REMARK 465 ILE A 504 REMARK 465 SER A 505 REMARK 465 ASP A 506 REMARK 465 THR A 507 REMARK 465 THR A 508 REMARK 465 VAL A 509 REMARK 465 LYS A 510 REMARK 465 SER A 511 REMARK 465 LYS A 512 REMARK 465 GLU A 513 REMARK 465 SER A 514 REMARK 465 ALA A 515 REMARK 465 PRO A 516 REMARK 465 ILE A 517 REMARK 465 THR A 518 REMARK 465 ILE A 519 REMARK 465 PRO A 520 REMARK 465 SER A 521 REMARK 465 SER A 522 REMARK 465 PRO A 523 REMARK 465 PRO A 524 REMARK 465 LYS A 525 REMARK 465 PRO A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 GLN A 529 REMARK 465 PRO A 530 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 DT H 16 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT H 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT H 16 C7 C6 REMARK 470 DT R 0 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT R 0 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT R 0 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 15 N ILE A 16 1.62 REMARK 500 N GLY A 2 O HOH A 701 1.88 REMARK 500 CE1 HIS A 29 O HOH A 727 1.88 REMARK 500 N3 DG H 22 O HOH H 101 1.97 REMARK 500 OE1 GLN A 215 O HOH A 702 2.04 REMARK 500 NE ARG A 66 O HOH A 703 2.05 REMARK 500 OE1 GLU A 358 OG1 THR A 455 2.12 REMARK 500 CD2 HIS A 172 O HOH A 733 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 14 C ARG A 15 N -0.215 REMARK 500 ARG A 15 C ILE A 16 N -0.223 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 CA - C - N ANGL. DEV. = 32.7 DEGREES REMARK 500 ARG A 15 O - C - N ANGL. DEV. = -34.0 DEGREES REMARK 500 PRO A 81 C - N - CA ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 39 2.02 -61.65 REMARK 500 PHE A 44 74.34 -107.34 REMARK 500 GLN A 45 -38.90 -166.35 REMARK 500 ASP A 155 60.16 63.25 REMARK 500 ARG A 227 63.59 -104.09 REMARK 500 SER A 298 69.57 -100.65 REMARK 500 PHE A 318 -164.56 61.36 REMARK 500 LYS A 356 111.18 -165.33 REMARK 500 GLU A 357 -70.75 -36.63 REMARK 500 GLU A 358 -44.81 65.04 REMARK 500 LEU A 361 -53.65 -121.39 REMARK 500 MSE A 367 161.28 179.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 14 -15.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MG A 601 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 122 OE2 REMARK 620 2 ASP A 141 OD2 110.5 REMARK 620 3 ASP A 143 OD2 96.9 79.3 REMARK 620 N 1 2 DBREF 6GRC A 1 521 UNP G0RYN2 G0RYN2_CHATD 1 521 DBREF 6GRC H 16 30 PDB 6GRC 6GRC 16 30 DBREF 6GRC R 0 15 PDB 6GRC 6GRC 0 15 SEQADV 6GRC SER A 522 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC PRO A 523 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC PRO A 524 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC LYS A 525 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC PRO A 526 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC SER A 527 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC SER A 528 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC GLN A 529 UNP G0RYN2 EXPRESSION TAG SEQADV 6GRC PRO A 530 UNP G0RYN2 EXPRESSION TAG SEQRES 1 A 530 MET GLY ILE LYS GLY ILE TYR LYS GLU ILE GLY SER GLY SEQRES 2 A 530 GLU ARG ILE SER LEU CYS LYS LEU ALA ILE ASP HIS LEU SEQRES 3 A 530 GLU GLN HIS ASN ARG PRO LEU ARG LEU ALA ILE ASP MSE SEQRES 4 A 530 ALA ILE TRP GLN PHE GLN ILE GLN ALA ALA ARG GLY GLY SEQRES 5 A 530 SER ASN PRO ALA ILE ARG THR LEU PHE TYR ARG PHE VAL SEQRES 6 A 530 ARG LEU LEU SER LEU GLY ILE HIS PRO ILE PHE VAL PHE SEQRES 7 A 530 ASP GLY PRO ASN LYS PRO ILE PHE LYS ARG ASN ARG ARG SEQRES 8 A 530 SER GLY THR GLY ASN GLY VAL SER THR ALA MSE ALA LYS SEQRES 9 A 530 ARG LEU ILE ARG LEU PHE GLY PHE THR ALA HIS ASP ALA SEQRES 10 A 530 PRO GLY GLU ALA GLU ALA GLU CYS ALA TYR LEU GLU GLN SEQRES 11 A 530 GLN GLY ILE VAL ASP ALA VAL LEU SER GLU ASP VAL ASP SEQRES 12 A 530 THR ILE MSE PHE GLY SER ARG VAL THR LEU ARG ASP TRP SEQRES 13 A 530 SER SER GLU GLY SER LYS GLY GLY PRO PRO THR HIS VAL SEQRES 14 A 530 THR LEU HIS ASP ALA LYS LYS ILE ALA GLU GLY PRO SER SEQRES 15 A 530 GLY LEU ASP ARG GLU GLY MSE VAL LEU VAL ALA LEU MET SEQRES 16 A 530 SER GLY GLY ASP TYR LEU PRO ASP GLY ILE PRO GLY CYS SEQRES 17 A 530 GLY ILE LYS VAL ALA CYS GLN ALA ALA LYS ALA GLY PHE SEQRES 18 A 530 GLY LYS GLU LEU CYS ARG ILE LYS ARG ALA ASP LYS GLU SEQRES 19 A 530 ALA ILE THR GLU TRP LYS GLN ARG LEU LEU HIS GLU LEU SEQRES 20 A 530 ARG THR ASN GLU SER GLY PHE PHE ARG THR LYS HIS LYS SEQRES 21 A 530 ALA LEU GLU ILE PRO GLU ASN PHE PRO ASN MSE GLU VAL SEQRES 22 A 530 LEU ARG TYR TYR THR HIS PRO VAL VAL SER SER PRO ALA SEQRES 23 A 530 THR ILE GLU ARG LEU ARG GLN GLU PHE PRO PRO SER SER SEQRES 24 A 530 THR VAL ASP ILE ALA GLY LEU ARG GLU PHE THR ARG GLU SEQRES 25 A 530 THR PHE ASP TRP THR PHE ARG PRO GLY ALA ILE LYS LEU SEQRES 26 A 530 ILE LYS VAL LEU ALA PRO GLY LEU LEU VAL GLN ARG CYS SEQRES 27 A 530 LEU ASP ARG TYR VAL SER GLY PRO ARG ILE ASP ASP PRO SEQRES 28 A 530 ASP LEU LYS LYS LYS GLU GLU SER THR LEU VAL LYS GLY SEQRES 29 A 530 ILE SER MSE ARG ARG GLU HIS PHE SER THR ASP ALA THR SEQRES 30 A 530 PRO GLU LEU ARG VAL SER PHE ILE PRO ALA GLU LEU VAL SEQRES 31 A 530 GLY LEU ASP PRO GLY GLN GLU PRO GLU VAL GLN VAL GLU SEQRES 32 A 530 ALA PHE GLY ARG SER GLY LEU ALA LEU ASN SER ASP ASP SEQRES 33 A 530 GLU PHE ASP GLU ASP ILE SER SER SER GLN LYS ALA PRO SEQRES 34 A 530 LYS LYS PRO PHE ASP PRO TRP GLN PRO ASP LEU ALA TRP SEQRES 35 A 530 VAL PRO GLU THR ILE LEU LYS LEU GLY VAL PRO VAL THR SEQRES 36 A 530 VAL GLU ASP TRP GLU GLU GLY GLN ARG SER LYS GLY ARG SEQRES 37 A 530 ALA LYS GLU ASP LYS THR ALA ALA LYS ALA LYS ARG LYS SEQRES 38 A 530 THR LYS ILE ILE GLN SER ASN MSE PRO ALA GLY ALA LEU SEQRES 39 A 530 ASP LYS TYR VAL THR VAL THR LYS ASN ILE SER ASP THR SEQRES 40 A 530 THR VAL LYS SER LYS GLU SER ALA PRO ILE THR ILE PRO SEQRES 41 A 530 SER SER PRO PRO LYS PRO SER SER GLN PRO SEQRES 1 H 15 DT DG DA DG DC DG DG DT DG DG DT DT DG SEQRES 2 H 15 DG DT SEQRES 1 R 16 DT DA DC DC DC DA DC DC DA DC DC DG DC SEQRES 2 R 16 DT DC DA MODRES 6GRC MSE A 39 MET MODIFIED RESIDUE MODRES 6GRC MSE A 102 MET MODIFIED RESIDUE MODRES 6GRC MSE A 146 MET MODIFIED RESIDUE MODRES 6GRC MSE A 189 MET MODIFIED RESIDUE MODRES 6GRC MSE A 271 MET MODIFIED RESIDUE MODRES 6GRC MSE A 367 MET MODIFIED RESIDUE HET MSE A 39 8 HET MSE A 102 8 HET MSE A 146 8 HET MSE A 189 8 HET MSE A 271 8 HET MSE A 367 8 HET MG A 601 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 MG MG 2+ FORMUL 5 HOH *37(H2 O) HELIX 1 AA1 GLY A 5 GLY A 11 1 7 HELIX 2 AA2 LEU A 18 ASN A 30 1 13 HELIX 3 AA3 ALA A 40 GLN A 43 5 4 HELIX 4 AA4 ASN A 54 GLY A 71 1 18 HELIX 5 AA5 SER A 99 PHE A 110 1 12 HELIX 6 AA6 GLU A 120 GLN A 131 1 12 HELIX 7 AA7 VAL A 142 MSE A 146 5 5 HELIX 8 AA8 ALA A 174 GLU A 179 1 6 HELIX 9 AA9 ASP A 185 GLY A 197 1 13 HELIX 10 AB1 GLY A 209 GLY A 220 1 12 HELIX 11 AB2 GLY A 220 ARG A 227 1 8 HELIX 12 AB3 LYS A 233 ASN A 250 1 18 HELIX 13 AB4 ASN A 270 HIS A 279 1 10 HELIX 14 AB5 SER A 284 PHE A 295 1 12 HELIX 15 AB6 ASP A 302 ASP A 315 1 14 HELIX 16 AB7 THR A 317 ASP A 340 1 24 HELIX 17 AB8 PHE A 372 ASP A 375 5 4 HELIX 18 AB9 ILE A 385 GLY A 391 1 7 HELIX 19 AC1 ASP A 393 GLU A 397 5 5 HELIX 20 AC2 GLU A 445 VAL A 452 1 8 HELIX 21 AC3 VAL A 452 SER A 465 1 14 SHEET 1 AA1 7 GLU A 14 SER A 17 0 SHEET 2 AA1 7 HIS A 168 ASP A 173 -1 O LEU A 171 N GLU A 14 SHEET 3 AA1 7 VAL A 151 SER A 157 -1 N ARG A 154 O THR A 170 SHEET 4 AA1 7 ALA A 136 LEU A 138 1 N VAL A 137 O LEU A 153 SHEET 5 AA1 7 ARG A 34 ASP A 38 1 N ALA A 36 O LEU A 138 SHEET 6 AA1 7 HIS A 73 PHE A 78 1 O VAL A 77 N ILE A 37 SHEET 7 AA1 7 THR A 113 ASP A 116 1 O HIS A 115 N PHE A 78 SHEET 1 AA2 3 GLY A 364 GLU A 370 0 SHEET 2 AA2 3 PRO A 378 PHE A 384 -1 O ARG A 381 N MSE A 367 SHEET 3 AA2 3 ASP A 439 PRO A 444 -1 O ASP A 439 N PHE A 384 LINK C ASP A 38 N MSE A 39 1555 1555 1.32 LINK C MSE A 39 N ALA A 40 1555 1555 1.32 LINK C ALA A 101 N MSE A 102 1555 1555 1.31 LINK C MSE A 102 N ALA A 103 1555 1555 1.31 LINK OE2 GLU A 122 MG MG A 601 1555 1555 2.84 LINK OD2 ASP A 141 MG MG A 601 1555 1555 2.40 LINK OD2 ASP A 143 MG MG A 601 1555 1555 2.15 LINK C ILE A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N PHE A 147 1555 1555 1.33 LINK C GLY A 188 N MSE A 189 1555 1555 1.32 LINK C MSE A 189 N VAL A 190 1555 1555 1.33 LINK C ASN A 270 N MSE A 271 1555 1555 1.32 LINK C MSE A 271 N GLU A 272 1555 1555 1.32 LINK C SER A 366 N MSE A 367 1555 1555 1.33 LINK C MSE A 367 N ARG A 368 1555 1555 1.32 CISPEP 1 GLY A 2 ILE A 3 0 -4.66 CISPEP 2 PHE A 268 PRO A 269 0 2.19 CISPEP 3 PHE A 295 PRO A 296 0 3.13 CRYST1 98.430 98.430 119.730 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010160 0.005866 0.000000 0.00000 SCALE2 0.000000 0.011731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008352 0.00000