HEADER IMMUNE SYSTEM 12-JUN-18 6GRQ TITLE PAIRED IMMUNOGLOBULIN-LIKE RECEPTOR B (PIRB) OR LEUKOCYTE TITLE 2 IMMUNOGLOBULIN-LIKE RECEPTOR SUBFAMILY B MEMBER 3 (LILRB3) FULL TITLE 3 EXTRACELLULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAIRED IMMUNOGLOBULIN-LIKE RECEPTOR B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIRB, LILRB3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS NEURONAL GROWTH INHIBITION, B CELL DOWN REGULATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.C.VLIEG,E.G.HUIZINGA,B.J.C.JANSSEN REVDAT 4 17-JAN-24 6GRQ 1 HETSYN REVDAT 3 29-JUL-20 6GRQ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 03-APR-19 6GRQ 1 JRNL REVDAT 1 06-FEB-19 6GRQ 0 JRNL AUTH H.C.VLIEG,E.G.HUIZINGA,B.J.C.JANSSEN JRNL TITL STRUCTURE AND FLEXIBILITY OF THE EXTRACELLULAR REGION OF THE JRNL TITL 2 PIRB RECEPTOR. JRNL REF J.BIOL.CHEM. V. 294 4634 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30674550 JRNL DOI 10.1074/JBC.RA118.004396 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 35367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.1944 - 7.5489 1.00 2853 134 0.2533 0.2812 REMARK 3 2 7.5489 - 5.9944 1.00 2855 150 0.2481 0.2851 REMARK 3 3 5.9944 - 5.2375 1.00 2861 151 0.1933 0.2604 REMARK 3 4 5.2375 - 4.7589 1.00 2805 169 0.1654 0.1918 REMARK 3 5 4.7589 - 4.4180 1.00 2861 119 0.1554 0.2257 REMARK 3 6 4.4180 - 4.1576 1.00 2872 168 0.1898 0.2301 REMARK 3 7 4.1576 - 3.9495 1.00 2813 147 0.2264 0.3455 REMARK 3 8 3.9495 - 3.7776 0.93 2648 151 0.3811 0.4822 REMARK 3 9 3.7776 - 3.6322 0.92 2623 139 0.4159 0.4188 REMARK 3 10 3.6322 - 3.5069 0.98 2801 133 0.3643 0.4125 REMARK 3 11 3.5069 - 3.3973 0.97 2748 136 0.4506 0.5150 REMARK 3 12 3.3973 - 3.3002 1.00 2891 139 0.3909 0.4058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4386 REMARK 3 ANGLE : 0.793 5959 REMARK 3 CHIRALITY : 0.032 654 REMARK 3 PLANARITY : 0.003 757 REMARK 3 DIHEDRAL : 12.041 1580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 119) REMARK 3 ORIGIN FOR THE GROUP (A): -73.7261 -24.3437 -12.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.8437 T22: 1.4013 REMARK 3 T33: 0.5888 T12: 0.1189 REMARK 3 T13: 0.1052 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 2.6561 L22: 3.0446 REMARK 3 L33: 6.5704 L12: -1.6089 REMARK 3 L13: 4.3718 L23: -2.2096 REMARK 3 S TENSOR REMARK 3 S11: -0.1681 S12: 0.2431 S13: 0.4353 REMARK 3 S21: 0.0327 S22: 0.2212 S23: 0.3922 REMARK 3 S31: -0.0793 S32: -0.7801 S33: -0.0779 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 221) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5165 -35.3728 -16.5929 REMARK 3 T TENSOR REMARK 3 T11: 0.4795 T22: 0.7101 REMARK 3 T33: 0.4380 T12: 0.1885 REMARK 3 T13: -0.0162 T23: -0.1833 REMARK 3 L TENSOR REMARK 3 L11: 4.9936 L22: 8.2686 REMARK 3 L33: 8.9110 L12: 2.6272 REMARK 3 L13: -3.7192 L23: -3.1312 REMARK 3 S TENSOR REMARK 3 S11: -0.3433 S12: 0.0491 S13: -0.6462 REMARK 3 S21: -0.3218 S22: 0.2521 S23: -0.2819 REMARK 3 S31: 0.7991 S32: -0.0526 S33: 0.0876 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1183 -14.7238 -18.8687 REMARK 3 T TENSOR REMARK 3 T11: 0.9927 T22: 0.7657 REMARK 3 T33: 0.8480 T12: 0.1641 REMARK 3 T13: 0.1079 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 9.4261 L22: 6.8019 REMARK 3 L33: 8.0935 L12: 2.4563 REMARK 3 L13: 5.2367 L23: 2.5621 REMARK 3 S TENSOR REMARK 3 S11: -0.3468 S12: -0.2904 S13: 0.9830 REMARK 3 S21: -0.8476 S22: 0.1619 S23: -0.1317 REMARK 3 S31: -0.5282 S32: 0.0095 S33: 0.0422 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 419) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2168 -20.0713 -13.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.6611 T22: 0.9472 REMARK 3 T33: 0.6366 T12: 0.1146 REMARK 3 T13: -0.2899 T23: 0.1014 REMARK 3 L TENSOR REMARK 3 L11: 8.2542 L22: 6.3661 REMARK 3 L33: 2.7748 L12: 5.1334 REMARK 3 L13: -2.2083 L23: 0.4851 REMARK 3 S TENSOR REMARK 3 S11: 0.3500 S12: -0.1989 S13: -0.4889 REMARK 3 S21: 0.4844 S22: -0.5333 S23: -0.2109 REMARK 3 S31: -0.0050 S32: 0.3853 S33: 0.0766 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 420 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5466 5.3968 -9.4607 REMARK 3 T TENSOR REMARK 3 T11: 1.2308 T22: 1.1389 REMARK 3 T33: 1.1056 T12: -0.1812 REMARK 3 T13: -0.3359 T23: 0.2249 REMARK 3 L TENSOR REMARK 3 L11: 4.3998 L22: 9.1652 REMARK 3 L33: 4.7817 L12: -3.1904 REMARK 3 L13: -0.4847 L23: -5.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.4386 S12: -0.2627 S13: 1.3941 REMARK 3 S21: 0.0918 S22: -0.5713 S23: -0.4407 REMARK 3 S31: -1.2482 S32: 0.6709 S33: 0.8481 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 519 THROUGH 610) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2680 0.5214 0.2859 REMARK 3 T TENSOR REMARK 3 T11: 1.3859 T22: 1.5453 REMARK 3 T33: 1.4399 T12: -0.3824 REMARK 3 T13: -0.4404 T23: 0.7587 REMARK 3 L TENSOR REMARK 3 L11: 5.9720 L22: 5.1376 REMARK 3 L33: 6.7460 L12: 4.9120 REMARK 3 L13: -1.3003 L23: -0.2606 REMARK 3 S TENSOR REMARK 3 S11: 1.6022 S12: -0.5343 S13: -0.4380 REMARK 3 S21: 0.8047 S22: -1.9895 S23: -2.1492 REMARK 3 S31: 0.3151 S32: 1.7019 S33: 0.8741 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19634 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 53.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.30 REMARK 200 R MERGE (I) : 0.27700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.50 REMARK 200 R MERGE FOR SHELL (I) : 2.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2D3V, 4LLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M LICL, 14% PEG 6000, 0.1M CITIC REMARK 280 ACID BUFFER PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.99000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.49500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 163.48500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.99000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 163.48500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.49500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLN A 75 REMARK 465 VAL A 528 REMARK 465 LYS A 529 REMARK 465 PRO A 530 REMARK 465 ASN A 531 REMARK 465 HIS A 532 REMARK 465 THR A 533 REMARK 465 VAL A 534 REMARK 465 HIS A 535 REMARK 465 SER A 536 REMARK 465 GLY A 537 REMARK 465 GLU A 538 REMARK 465 THR A 539 REMARK 465 VAL A 540 REMARK 465 SER A 541 REMARK 465 LEU A 542 REMARK 465 LEU A 543 REMARK 465 CYS A 544 REMARK 465 TRP A 545 REMARK 465 SER A 546 REMARK 465 MET A 547 REMARK 465 ASP A 548 REMARK 465 SER A 549 REMARK 465 LEU A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 465 LYS A 570 REMARK 465 SER A 571 REMARK 465 HIS A 572 REMARK 465 ASP A 573 REMARK 465 GLN A 574 REMARK 465 GLN A 575 REMARK 465 SER A 576 REMARK 465 GLN A 577 REMARK 465 ALA A 578 REMARK 465 GLU A 579 REMARK 465 PHE A 580 REMARK 465 SER A 581 REMARK 465 MET A 582 REMARK 465 SER A 583 REMARK 465 ALA A 584 REMARK 465 VAL A 585 REMARK 465 THR A 586 REMARK 465 SER A 587 REMARK 465 HIS A 588 REMARK 465 LEU A 589 REMARK 465 SER A 590 REMARK 465 GLY A 591 REMARK 465 THR A 592 REMARK 465 TYR A 593 REMARK 465 ALA A 611 REMARK 465 PRO A 612 REMARK 465 VAL A 613 REMARK 465 GLU A 614 REMARK 465 LEU A 615 REMARK 465 THR A 616 REMARK 465 VAL A 617 REMARK 465 SER A 618 REMARK 465 GLY A 619 REMARK 465 ALA A 620 REMARK 465 ALA A 621 REMARK 465 ALA A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 338 O5 NAG A 701 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 35 -160.25 -76.12 REMARK 500 ASP A 36 174.14 -58.78 REMARK 500 GLN A 103 -108.24 54.76 REMARK 500 HIS A 120 -13.15 64.36 REMARK 500 PRO A 160 -71.55 -59.03 REMARK 500 GLU A 357 -120.09 55.51 REMARK 500 PRO A 387 -1.55 -58.31 REMARK 500 SER A 407 -169.77 -78.50 REMARK 500 HIS A 429 -176.14 -67.98 REMARK 500 THR A 439 98.45 -61.54 REMARK 500 SER A 560 99.05 -64.54 REMARK 500 SER A 601 -73.13 -65.36 REMARK 500 SER A 607 128.57 -173.52 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GRQ A 25 619 UNP Q8K4V6 Q8K4V6_MOUSE 25 619 SEQADV 6GRQ GLY A 23 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ SER A 24 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ ALA A 620 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ ALA A 621 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ ALA A 622 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ HIS A 623 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ HIS A 624 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ HIS A 625 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ HIS A 626 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ HIS A 627 UNP Q8K4V6 EXPRESSION TAG SEQADV 6GRQ HIS A 628 UNP Q8K4V6 EXPRESSION TAG SEQRES 1 A 606 GLY SER SER LEU PRO LYS PRO ILE LEU ARG VAL GLN PRO SEQRES 2 A 606 ASP SER VAL VAL SER ARG TRP THR LYS VAL THR PHE PHE SEQRES 3 A 606 CYS GLU GLU THR ILE GLY ALA ASN GLU TYR ARG LEU TYR SEQRES 4 A 606 LYS ASP GLY LYS LEU TYR LYS THR VAL THR LYS ASN LYS SEQRES 5 A 606 GLN LYS PRO ALA ASN LYS ALA GLU PHE SER LEU SER ASN SEQRES 6 A 606 VAL ASP LEU SER ASN ALA GLY GLN TYR GLU CYS SER TYR SEQRES 7 A 606 SER THR GLN TYR LYS SER SER GLY TYR SER ASP PRO LEU SEQRES 8 A 606 LYS LEU VAL VAL THR GLY HIS TYR TRP THR PRO SER LEU SEQRES 9 A 606 LEU ALA GLN ALA SER PRO VAL VAL THR SER GLY GLY TYR SEQRES 10 A 606 VAL THR LEU GLN CYS GLU SER TRP HIS ASN ASP HIS LYS SEQRES 11 A 606 PHE ILE LEU THR VAL GLU GLY PRO GLN LYS LEU SER TRP SEQRES 12 A 606 THR GLN ASP SER GLN TYR ASN TYR SER THR ARG LYS TYR SEQRES 13 A 606 HIS ALA LEU PHE SER VAL GLY PRO VAL THR PRO ASN GLN SEQRES 14 A 606 ARG TRP ILE CYS ARG CYS TYR SER TYR ASP ARG ASN ARG SEQRES 15 A 606 PRO TYR VAL TRP SER PRO PRO SER GLU SER VAL GLU LEU SEQRES 16 A 606 LEU VAL SER GLY ASN LEU GLN LYS PRO THR ILE LYS ALA SEQRES 17 A 606 GLU PRO GLY SER VAL ILE THR SER LYS ARG ALA MET THR SEQRES 18 A 606 ILE TRP CYS GLN GLY ASN LEU ASP ALA GLU VAL TYR PHE SEQRES 19 A 606 LEU HIS ASN GLU GLY SER GLN LYS THR GLN SER THR GLN SEQRES 20 A 606 THR LEU GLN GLN PRO GLY ASN LYS GLY LYS PHE PHE ILE SEQRES 21 A 606 PRO SER MET THR ARG GLN HIS ALA GLY GLN TYR ARG CYS SEQRES 22 A 606 TYR CYS TYR GLY SER ALA GLY TRP SER GLN PRO SER ASP SEQRES 23 A 606 THR LEU GLU LEU VAL VAL THR GLY ILE TYR GLU HIS TYR SEQRES 24 A 606 LYS PRO ARG LEU SER VAL LEU PRO SER PRO VAL VAL THR SEQRES 25 A 606 ALA GLY GLY ASN MET THR LEU HIS CYS ALA SER ASP PHE SEQRES 26 A 606 HIS TYR ASP LYS PHE ILE LEU THR LYS GLU ASP LYS LYS SEQRES 27 A 606 PHE GLY ASN SER LEU ASP THR GLU HIS ILE SER SER SER SEQRES 28 A 606 ARG GLN TYR ARG ALA LEU PHE ILE ILE GLY PRO THR THR SEQRES 29 A 606 PRO THR HIS THR GLY THR PHE ARG CYS TYR GLY TYR PHE SEQRES 30 A 606 LYS ASN ALA PRO GLN LEU TRP SER VAL PRO SER ASP LEU SEQRES 31 A 606 GLN GLN ILE LEU ILE SER GLY LEU SER LYS LYS PRO SER SEQRES 32 A 606 LEU LEU THR HIS GLN GLY HIS ILE LEU ASP PRO GLY MET SEQRES 33 A 606 THR LEU THR LEU GLN CYS TYR SER ASP ILE ASN TYR ASP SEQRES 34 A 606 ARG PHE ALA LEU HIS LYS VAL GLY GLY ALA ASP ILE MET SEQRES 35 A 606 GLN HIS SER SER GLN GLN THR ASP THR GLY PHE SER VAL SEQRES 36 A 606 ALA ASN PHE THR LEU GLY TYR VAL SER SER SER THR GLY SEQRES 37 A 606 GLY GLN TYR ARG CYS TYR GLY ALA HIS ASN LEU SER SER SEQRES 38 A 606 GLU TRP SER ALA SER SER GLU PRO LEU ASP ILE LEU ILE SEQRES 39 A 606 THR GLY GLN LEU PRO LEU THR PRO SER LEU SER VAL LYS SEQRES 40 A 606 PRO ASN HIS THR VAL HIS SER GLY GLU THR VAL SER LEU SEQRES 41 A 606 LEU CYS TRP SER MET ASP SER VAL ASP THR PHE ILE LEU SEQRES 42 A 606 SER LYS GLU GLY SER ALA GLN GLN PRO LEU ARG LEU LYS SEQRES 43 A 606 SER LYS SER HIS ASP GLN GLN SER GLN ALA GLU PHE SER SEQRES 44 A 606 MET SER ALA VAL THR SER HIS LEU SER GLY THR TYR ARG SEQRES 45 A 606 CYS TYR GLY ALA GLN ASN SER SER PHE TYR LEU LEU SER SEQRES 46 A 606 SER ALA SER ALA PRO VAL GLU LEU THR VAL SER GLY ALA SEQRES 47 A 606 ALA ALA HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG A 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) HELIX 1 AA1 ASP A 89 ALA A 93 5 5 HELIX 2 AA2 THR A 286 ALA A 290 5 5 HELIX 3 AA3 THR A 386 THR A 390 5 5 SHEET 1 AA1 3 ILE A 30 GLN A 34 0 SHEET 2 AA1 3 VAL A 45 GLU A 50 -1 O PHE A 48 N ARG A 32 SHEET 3 AA1 3 LYS A 80 LEU A 85 -1 O LEU A 85 N VAL A 45 SHEET 1 AA2 4 VAL A 38 SER A 40 0 SHEET 2 AA2 4 LEU A 113 THR A 118 1 O VAL A 116 N VAL A 39 SHEET 3 AA2 4 GLY A 94 THR A 102 -1 N GLY A 94 O LEU A 115 SHEET 4 AA2 4 LYS A 105 SER A 107 -1 O LYS A 105 N THR A 102 SHEET 1 AA3 5 LYS A 65 THR A 71 0 SHEET 2 AA3 5 GLU A 57 LYS A 62 -1 N LYS A 62 O LYS A 65 SHEET 3 AA3 5 GLY A 94 THR A 102 -1 O SER A 99 N ARG A 59 SHEET 4 AA3 5 LEU A 113 THR A 118 -1 O LEU A 115 N GLY A 94 SHEET 5 AA3 5 VAL A 207 TRP A 208 1 O TRP A 208 N VAL A 117 SHEET 1 AA4 4 SER A 125 ALA A 128 0 SHEET 2 AA4 4 VAL A 140 SER A 146 -1 O GLN A 143 N LEU A 127 SHEET 3 AA4 4 LYS A 177 VAL A 184 -1 O PHE A 182 N LEU A 142 SHEET 4 AA4 4 GLN A 170 ASN A 172 -1 N ASN A 172 O LYS A 177 SHEET 1 AA5 2 VAL A 133 THR A 135 0 SHEET 2 AA5 2 LEU A 218 SER A 220 1 O LEU A 218 N VAL A 134 SHEET 1 AA6 4 LEU A 163 ASP A 168 0 SHEET 2 AA6 4 LYS A 152 VAL A 157 -1 N PHE A 153 O GLN A 167 SHEET 3 AA6 4 ILE A 194 TYR A 200 -1 O TYR A 200 N LYS A 152 SHEET 4 AA6 4 VAL A 215 GLU A 216 -1 O VAL A 215 N CYS A 195 SHEET 1 AA7 3 THR A 227 ALA A 230 0 SHEET 2 AA7 3 MET A 242 GLN A 247 -1 O GLN A 247 N THR A 227 SHEET 3 AA7 3 LYS A 277 ILE A 282 -1 O ILE A 282 N MET A 242 SHEET 1 AA8 5 VAL A 235 THR A 237 0 SHEET 2 AA8 5 LEU A 310 THR A 315 1 O VAL A 313 N ILE A 236 SHEET 3 AA8 5 GLY A 291 GLY A 299 -1 N TYR A 293 O LEU A 310 SHEET 4 AA8 5 ALA A 252 ASN A 259 -1 N PHE A 256 O TYR A 296 SHEET 5 AA8 5 GLN A 263 SER A 267 -1 O SER A 267 N TYR A 255 SHEET 1 AA9 4 VAL A 235 THR A 237 0 SHEET 2 AA9 4 LEU A 310 THR A 315 1 O VAL A 313 N ILE A 236 SHEET 3 AA9 4 GLY A 291 GLY A 299 -1 N TYR A 293 O LEU A 310 SHEET 4 AA9 4 GLY A 302 TRP A 303 -1 O GLY A 302 N GLY A 299 SHEET 1 AB1 4 ARG A 324 LEU A 328 0 SHEET 2 AB1 4 MET A 339 SER A 345 -1 O HIS A 342 N SER A 326 SHEET 3 AB1 4 TYR A 376 ILE A 382 -1 O PHE A 380 N LEU A 341 SHEET 4 AB1 4 GLU A 368 HIS A 369 -1 N GLU A 368 O ARG A 377 SHEET 1 AB2 5 VAL A 332 THR A 334 0 SHEET 2 AB2 5 GLN A 413 SER A 418 1 O LEU A 416 N VAL A 333 SHEET 3 AB2 5 GLY A 391 PHE A 399 -1 N GLY A 391 O ILE A 415 SHEET 4 AB2 5 LYS A 351 LYS A 356 -1 N LYS A 351 O TYR A 398 SHEET 5 AB2 5 LYS A 359 ASP A 366 -1 O LYS A 359 N LYS A 356 SHEET 1 AB3 4 VAL A 332 THR A 334 0 SHEET 2 AB3 4 GLN A 413 SER A 418 1 O LEU A 416 N VAL A 333 SHEET 3 AB3 4 GLY A 391 PHE A 399 -1 N GLY A 391 O ILE A 415 SHEET 4 AB3 4 ALA A 402 TRP A 406 -1 O ALA A 402 N PHE A 399 SHEET 1 AB4 2 ILE A 433 LEU A 434 0 SHEET 2 AB4 2 LEU A 515 ILE A 516 1 O LEU A 515 N LEU A 434 SHEET 1 AB5 3 THR A 439 SER A 446 0 SHEET 2 AB5 3 SER A 476 TYR A 484 -1 O PHE A 480 N LEU A 442 SHEET 3 AB5 3 GLN A 469 GLN A 470 -1 N GLN A 469 O VAL A 477 SHEET 1 AB6 4 ILE A 463 SER A 467 0 SHEET 2 AB6 4 ARG A 452 LYS A 457 -1 N PHE A 453 O HIS A 466 SHEET 3 AB6 4 GLN A 492 ALA A 498 -1 O TYR A 496 N ALA A 454 SHEET 4 AB6 4 LEU A 512 ASP A 513 -1 O LEU A 512 N TYR A 493 SHEET 1 AB7 3 LEU A 565 ARG A 566 0 SHEET 2 AB7 3 PHE A 553 LEU A 555 -1 N LEU A 555 O LEU A 565 SHEET 3 AB7 3 CYS A 595 GLY A 597 -1 O TYR A 596 N ILE A 554 SSBOND 1 CYS A 49 CYS A 98 1555 1555 2.03 SSBOND 2 CYS A 144 CYS A 197 1555 1555 2.03 SSBOND 3 CYS A 246 CYS A 295 1555 1555 2.03 SSBOND 4 CYS A 343 CYS A 395 1555 1555 2.03 SSBOND 5 CYS A 444 CYS A 495 1555 1555 2.03 LINK ND2 ASN A 338 C1 NAG A 701 1555 1555 1.42 LINK ND2 ASN A 479 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 GLN A 34 PRO A 35 0 -0.52 CISPEP 2 GLY A 185 PRO A 186 0 -1.62 CISPEP 3 GLY A 261 SER A 262 0 -5.15 CISPEP 4 GLN A 273 PRO A 274 0 -7.71 CISPEP 5 LEU A 328 PRO A 329 0 3.38 CISPEP 6 GLY A 383 PRO A 384 0 -1.69 CISPEP 7 PRO A 436 GLY A 437 0 1.39 CRYST1 106.375 106.375 217.980 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004588 0.00000