data_6GS3 # _entry.id 6GS3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GS3 pdb_00006gs3 10.2210/pdb6gs3/pdb WWPDB D_1200010475 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-26 2 'Structure model' 1 1 2019-12-25 3 'Structure model' 1 2 2021-01-13 4 'Structure model' 1 3 2021-01-20 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' reflns_shell 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 4 'Structure model' citation 7 4 'Structure model' citation_author 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_reflns_shell.percent_possible_all' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_ASTM' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.title' 8 3 'Structure model' '_citation.year' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 27 3 'Structure model' '_pdbx_struct_conn_angle.value' 28 3 'Structure model' '_struct_conn.pdbx_dist_value' 29 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 3 'Structure model' '_struct_conn.ptnr1_symmetry' 37 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 3 'Structure model' '_struct_conn.ptnr2_symmetry' 44 4 'Structure model' '_citation.journal_volume' 45 4 'Structure model' '_citation.pdbx_database_id_DOI' 46 4 'Structure model' '_citation.pdbx_database_id_PubMed' 47 4 'Structure model' '_citation.title' 48 4 'Structure model' '_citation_author.identifier_ORCID' 49 4 'Structure model' '_citation_author.name' 50 5 'Structure model' '_database_2.pdbx_DOI' 51 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GS3 _pdbx_database_status.recvd_initial_deposition_date 2018-06-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Landau, M.' 1 0000-0002-1743-3430 'Tayeb-Fligelman, E.' 2 0000-0001-9318-5400 'Uson, I.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The amphibian antimicrobial peptide uperin 3.5 is a cross-alpha /cross-beta chameleon functional amyloid.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2014442118 _citation.pdbx_database_id_PubMed 33431675 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salinas, N.' 1 0000-0002-3511-2243 primary 'Tayeb-Fligelman, E.' 2 0000-0001-9318-5400 primary 'Sammito, M.D.' 3 ? primary 'Bloch, D.' 4 ? primary 'Jelinek, R.' 5 ? primary 'Noy, D.' 6 0000-0001-7200-7453 primary 'Uson, I.' 7 0000-0003-2504-1696 primary 'Landau, M.' 8 0000-0002-1743-3430 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Uperin-3.5 1784.173 2 ? ? 'Uperin-3.5 full-length, UNP residues 1-17' ? 2 non-polymer syn 'THIOCYANATE ION' 58.082 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GVGDLIRKAVSVIKNIV _entity_poly.pdbx_seq_one_letter_code_can GVGDLIRKAVSVIKNIV _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'THIOCYANATE ION' SCN 3 'POTASSIUM ION' K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 GLY n 1 4 ASP n 1 5 LEU n 1 6 ILE n 1 7 ARG n 1 8 LYS n 1 9 ALA n 1 10 VAL n 1 11 SER n 1 12 VAL n 1 13 ILE n 1 14 LYS n 1 15 ASN n 1 16 ILE n 1 17 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Uperoleia mjobergii' _pdbx_entity_src_syn.organism_common_name ;Mjoberg's toadlet ; _pdbx_entity_src_syn.ncbi_taxonomy_id 104954 _pdbx_entity_src_syn.details 'Uperin-3.5 peptide, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 VAL 17 17 17 VAL VAL A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 ASP 4 4 4 ASP ASP B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 ARG 7 7 7 ARG ARG B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 ILE 16 16 16 ILE ILE B . n B 1 17 VAL 17 17 17 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SCN 1 101 2 SCN SCN A . D 3 K 1 101 1 K K B . E 3 K 1 102 2 K K B . F 4 HOH 1 201 14 HOH HOH A . F 4 HOH 2 202 6 HOH HOH A . F 4 HOH 3 203 20 HOH HOH A . F 4 HOH 4 204 11 HOH HOH A . F 4 HOH 5 205 12 HOH HOH A . F 4 HOH 6 206 5 HOH HOH A . F 4 HOH 7 207 3 HOH HOH A . F 4 HOH 8 208 18 HOH HOH A . F 4 HOH 9 209 13 HOH HOH A . F 4 HOH 10 210 17 HOH HOH A . F 4 HOH 11 211 19 HOH HOH A . G 4 HOH 1 201 9 HOH HOH B . G 4 HOH 2 202 10 HOH HOH B . G 4 HOH 3 203 15 HOH HOH B . G 4 HOH 4 204 8 HOH HOH B . G 4 HOH 5 205 16 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? Arcimboldo ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 106.950 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6GS3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 19.700 _cell.length_a_esd ? _cell.length_b 28.440 _cell.length_b_esd ? _cell.length_c 20.320 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GS3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.53 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 19.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Reservoir contained 0.1 M KSCN, 0.1 M MES 6.03 pH, 20 %v/v Jeff 600 with cryo-protection of 20% ethylene glycol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER R 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-04-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9677 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE MASSIF-3' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9677 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MASSIF-3 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 21.604 _reflns.entry_id 6GS3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.450 _reflns.d_resolution_low 19.440 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3777 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.636 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.987 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.089 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.450 1.490 ? 2.720 ? ? ? ? 266 94.700 ? ? ? ? 0.601 ? ? ? ? ? ? ? ? 7.568 ? ? ? ? 0.648 ? ? 1 1 0.908 ? 1.490 1.530 ? 3.750 ? ? ? ? 263 91.300 ? ? ? ? 0.518 ? ? ? ? ? ? ? ? 8.380 ? ? ? ? 0.554 ? ? 2 1 0.904 ? 1.530 1.570 ? 4.880 ? ? ? ? 266 99.300 ? ? ? ? 0.443 ? ? ? ? ? ? ? ? 9.992 ? ? ? ? 0.467 ? ? 3 1 0.950 ? 1.570 1.620 ? 6.950 ? ? ? ? 244 95.300 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? 11.279 ? ? ? ? 0.368 ? ? 4 1 0.973 ? 1.620 1.670 ? 8.130 ? ? ? ? 258 95.900 ? ? ? ? 0.300 ? ? ? ? ? ? ? ? 11.678 ? ? ? ? 0.314 ? ? 5 1 0.982 ? 1.670 1.730 ? 8.730 ? ? ? ? 227 98.700 ? ? ? ? 0.292 ? ? ? ? ? ? ? ? 11.771 ? ? ? ? 0.305 ? ? 6 1 0.977 ? 1.730 1.800 ? 9.650 ? ? ? ? 232 95.100 ? ? ? ? 0.259 ? ? ? ? ? ? ? ? 11.440 ? ? ? ? 0.271 ? ? 7 1 0.985 ? 1.800 1.870 ? 11.990 ? ? ? ? 223 98.700 ? ? ? ? 0.190 ? ? ? ? ? ? ? ? 11.628 ? ? ? ? 0.199 ? ? 8 1 0.991 ? 1.870 1.960 ? 13.210 ? ? ? ? 216 96.400 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 11.227 ? ? ? ? 0.187 ? ? 9 1 0.993 ? 1.960 2.050 ? 17.060 ? ? ? ? 210 97.700 ? ? ? ? 0.134 ? ? ? ? ? ? ? ? 11.238 ? ? ? ? 0.141 ? ? 10 1 0.997 ? 2.050 2.160 ? 20.120 ? ? ? ? 200 98.500 ? ? ? ? 0.105 ? ? ? ? ? ? ? ? 11.040 ? ? ? ? 0.110 ? ? 11 1 0.996 ? 2.160 2.290 ? 22.280 ? ? ? ? 177 98.300 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 10.768 ? ? ? ? 0.097 ? ? 12 1 0.997 ? 2.290 2.450 ? 25.990 ? ? ? ? 179 98.900 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 10.307 ? ? ? ? 0.083 ? ? 13 1 0.997 ? 2.450 2.650 ? 26.930 ? ? ? ? 164 98.800 ? ? ? ? 0.080 ? ? ? ? ? ? ? ? 10.171 ? ? ? ? 0.085 ? ? 14 1 0.994 ? 2.650 2.900 ? 27.940 ? ? ? ? 158 96.900 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 10.114 ? ? ? ? 0.072 ? ? 15 1 0.998 ? 2.900 3.240 ? 34.100 ? ? ? ? 136 100.000 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 11.779 ? ? ? ? 0.062 ? ? 16 1 1.000 ? 3.240 3.740 ? 37.290 ? ? ? ? 118 100 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 11.517 ? ? ? ? 0.052 ? ? 17 1 0.999 ? 3.740 4.590 ? 38.130 ? ? ? ? 106 97.200 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 11.292 ? ? ? ? 0.050 ? ? 18 1 0.999 ? 4.590 6.490 ? 35.840 ? ? ? ? 86 98.900 ? ? ? ? 0.040 ? ? ? ? ? ? ? ? 11.174 ? ? ? ? 0.042 ? ? 19 1 1.000 ? 6.490 19.440 ? 32.410 ? ? ? ? 48 96.000 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 10.104 ? ? ? ? 0.048 ? ? 20 1 0.999 ? # _refine.aniso_B[1][1] -0.2900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0300 _refine.aniso_B[2][2] -1.1000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 1.1900 _refine.B_iso_max 43.990 _refine.B_iso_mean 14.4610 _refine.B_iso_min 8.740 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9360 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GS3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4500 _refine.ls_d_res_low 19.4400 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3398 _refine.ls_number_reflns_R_free 378 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.2400 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1890 _refine.ls_R_factor_R_free 0.2288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1850 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0920 _refine.pdbx_overall_ESU_R_Free 0.0990 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.7600 _refine.overall_SU_ML 0.0660 _refine.overall_SU_R_Cruickshank_DPI 0.0917 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.4500 _refine_hist.d_res_low 19.4400 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 271 _refine_hist.pdbx_number_residues_total 34 _refine_hist.pdbx_B_iso_mean_ligand 28.10 _refine_hist.pdbx_B_iso_mean_solvent 21.55 _refine_hist.pdbx_number_atoms_protein 250 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.016 0.019 254 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 293 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.783 2.013 338 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.946 3.000 670 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.162 5.000 33 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 40.735 23.333 6 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.579 15.000 52 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 6.228 15.000 2 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.103 0.200 46 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 265 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 41 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.4500 _refine_ls_shell.d_res_low 1.4880 _refine_ls_shell.number_reflns_all 264 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_R_work 238 _refine_ls_shell.percent_reflns_obs 93.6200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2800 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2440 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6GS3 _struct.title 'Crystal Structure of the Uperin-3.5 peptide from Uperoleia mjobergii forming cross-alpha fibril' _struct.pdbx_model_details 'Uperoleia mjobergii' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GS3 _struct_keywords.text 'cross-alpha, fibril, amyloid-like, mating alpha-helical sheets, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UPE35_UPEMJ _struct_ref.pdbx_db_accession P82042 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GVGDLIRKAVSVIKNIV _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GS3 A 1 ? 17 ? P82042 1 ? 17 ? 1 17 2 1 6GS3 B 1 ? 17 ? P82042 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G 1 3 A,B,C,D,E,F,G 1 4 A,B,C,D,E,F,G 1 5 A,B,C,D,E,F,G 1 6 A,B,C,D,E,F,G 1 7 A,B,C,D,E,F,G 1 8 A,B,C,D,E,F,G 1 9 A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'The fibrils were visualized via TEM and fiber diffraction.' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_955 x+4,y,z 1.0000000000 0.0000000000 0.0000000000 78.8000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_855 x+3,y,z 1.0000000000 0.0000000000 0.0000000000 59.1000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 39.4000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 19.7000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -19.7000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -39.4000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_255 x-3,y,z 1.0000000000 0.0000000000 0.0000000000 -59.1000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_155 x-4,y,z 1.0000000000 0.0000000000 0.0000000000 -78.8000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 1 ? LYS A 14 ? GLY A 1 LYS A 14 1 ? 14 HELX_P HELX_P2 AA2 VAL B 2 ? LYS B 14 ? VAL B 2 LYS B 14 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASN 15 OD1 ? ? ? 1_555 E K . K ? ? A ASN 15 B K 102 1_556 ? ? ? ? ? ? ? 3.488 ? ? metalc2 metalc ? ? F HOH . O ? ? ? 1_554 E K . K ? ? A HOH 203 B K 102 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc3 metalc ? ? F HOH . O ? ? ? 1_554 E K . K ? ? A HOH 204 B K 102 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc4 metalc ? ? F HOH . O ? ? ? 1_554 E K . K ? ? A HOH 208 B K 102 1_555 ? ? ? ? ? ? ? 2.873 ? ? metalc5 metalc ? ? F HOH . O ? ? ? 2_645 D K . K ? ? A HOH 209 B K 101 1_555 ? ? ? ? ? ? ? 3.035 ? ? metalc6 metalc ? ? B LYS 14 O ? ? ? 1_555 D K . K ? ? B LYS 14 B K 101 1_555 ? ? ? ? ? ? ? 2.490 ? ? metalc7 metalc ? ? B VAL 17 O ? ? ? 1_555 D K . K ? ? B VAL 17 B K 101 1_555 ? ? ? ? ? ? ? 2.370 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 15 ? A ASN 15 ? 1_555 K ? E K . ? B K 102 ? 1_556 O ? F HOH . ? A HOH 203 ? 1_554 89.3 ? 2 OD1 ? A ASN 15 ? A ASN 15 ? 1_555 K ? E K . ? B K 102 ? 1_556 O ? F HOH . ? A HOH 204 ? 1_554 93.7 ? 3 O ? F HOH . ? A HOH 203 ? 1_554 K ? E K . ? B K 102 ? 1_556 O ? F HOH . ? A HOH 204 ? 1_554 10.9 ? 4 OD1 ? A ASN 15 ? A ASN 15 ? 1_555 K ? E K . ? B K 102 ? 1_556 O ? F HOH . ? A HOH 208 ? 1_554 93.7 ? 5 O ? F HOH . ? A HOH 203 ? 1_554 K ? E K . ? B K 102 ? 1_556 O ? F HOH . ? A HOH 208 ? 1_554 4.6 ? 6 O ? F HOH . ? A HOH 204 ? 1_554 K ? E K . ? B K 102 ? 1_556 O ? F HOH . ? A HOH 208 ? 1_554 11.2 ? 7 O ? F HOH . ? A HOH 209 ? 2_645 K ? D K . ? B K 101 ? 1_555 O ? B LYS 14 ? B LYS 14 ? 1_555 71.1 ? 8 O ? F HOH . ? A HOH 209 ? 2_645 K ? D K . ? B K 101 ? 1_555 O ? B VAL 17 ? B VAL 17 ? 1_555 105.0 ? 9 O ? B LYS 14 ? B LYS 14 ? 1_555 K ? D K . ? B K 101 ? 1_555 O ? B VAL 17 ? B VAL 17 ? 1_555 128.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SCN 101 ? 3 'binding site for residue SCN A 101' AC2 Software B K 101 ? 3 'binding site for residue K B 101' AC3 Software B K 102 ? 6 'binding site for residue K B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 11 ? SER A 11 . ? 1_555 ? 2 AC1 3 LYS A 14 ? LYS A 14 . ? 1_555 ? 3 AC1 3 SER B 11 ? SER B 11 . ? 1_556 ? 4 AC2 3 ARG A 7 ? ARG A 7 . ? 1_554 ? 5 AC2 3 LYS B 14 ? LYS B 14 . ? 1_555 ? 6 AC2 3 VAL B 17 ? VAL B 17 . ? 1_555 ? 7 AC3 6 ASN A 15 ? ASN A 15 . ? 1_554 ? 8 AC3 6 HOH F . ? HOH A 203 . ? 1_554 ? 9 AC3 6 HOH F . ? HOH A 204 . ? 1_554 ? 10 AC3 6 HOH F . ? HOH A 208 . ? 1_554 ? 11 AC3 6 ASP B 4 ? ASP B 4 . ? 1_555 ? 12 AC3 6 ARG B 7 ? ARG B 7 . ? 1_555 ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLY N N N N 74 GLY CA C N N 75 GLY C C N N 76 GLY O O N N 77 GLY OXT O N N 78 GLY H H N N 79 GLY H2 H N N 80 GLY HA2 H N N 81 GLY HA3 H N N 82 GLY HXT H N N 83 HOH O O N N 84 HOH H1 H N N 85 HOH H2 H N N 86 ILE N N N N 87 ILE CA C N S 88 ILE C C N N 89 ILE O O N N 90 ILE CB C N S 91 ILE CG1 C N N 92 ILE CG2 C N N 93 ILE CD1 C N N 94 ILE OXT O N N 95 ILE H H N N 96 ILE H2 H N N 97 ILE HA H N N 98 ILE HB H N N 99 ILE HG12 H N N 100 ILE HG13 H N N 101 ILE HG21 H N N 102 ILE HG22 H N N 103 ILE HG23 H N N 104 ILE HD11 H N N 105 ILE HD12 H N N 106 ILE HD13 H N N 107 ILE HXT H N N 108 K K K N N 109 LEU N N N N 110 LEU CA C N S 111 LEU C C N N 112 LEU O O N N 113 LEU CB C N N 114 LEU CG C N N 115 LEU CD1 C N N 116 LEU CD2 C N N 117 LEU OXT O N N 118 LEU H H N N 119 LEU H2 H N N 120 LEU HA H N N 121 LEU HB2 H N N 122 LEU HB3 H N N 123 LEU HG H N N 124 LEU HD11 H N N 125 LEU HD12 H N N 126 LEU HD13 H N N 127 LEU HD21 H N N 128 LEU HD22 H N N 129 LEU HD23 H N N 130 LEU HXT H N N 131 LYS N N N N 132 LYS CA C N S 133 LYS C C N N 134 LYS O O N N 135 LYS CB C N N 136 LYS CG C N N 137 LYS CD C N N 138 LYS CE C N N 139 LYS NZ N N N 140 LYS OXT O N N 141 LYS H H N N 142 LYS H2 H N N 143 LYS HA H N N 144 LYS HB2 H N N 145 LYS HB3 H N N 146 LYS HG2 H N N 147 LYS HG3 H N N 148 LYS HD2 H N N 149 LYS HD3 H N N 150 LYS HE2 H N N 151 LYS HE3 H N N 152 LYS HZ1 H N N 153 LYS HZ2 H N N 154 LYS HZ3 H N N 155 LYS HXT H N N 156 SCN S S N N 157 SCN C C N N 158 SCN N N N N 159 SER N N N N 160 SER CA C N S 161 SER C C N N 162 SER O O N N 163 SER CB C N N 164 SER OG O N N 165 SER OXT O N N 166 SER H H N N 167 SER H2 H N N 168 SER HA H N N 169 SER HB2 H N N 170 SER HB3 H N N 171 SER HG H N N 172 SER HXT H N N 173 VAL N N N N 174 VAL CA C N S 175 VAL C C N N 176 VAL O O N N 177 VAL CB C N N 178 VAL CG1 C N N 179 VAL CG2 C N N 180 VAL OXT O N N 181 VAL H H N N 182 VAL H2 H N N 183 VAL HA H N N 184 VAL HB H N N 185 VAL HG11 H N N 186 VAL HG12 H N N 187 VAL HG13 H N N 188 VAL HG21 H N N 189 VAL HG22 H N N 190 VAL HG23 H N N 191 VAL HXT H N N 192 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLY N CA sing N N 70 GLY N H sing N N 71 GLY N H2 sing N N 72 GLY CA C sing N N 73 GLY CA HA2 sing N N 74 GLY CA HA3 sing N N 75 GLY C O doub N N 76 GLY C OXT sing N N 77 GLY OXT HXT sing N N 78 HOH O H1 sing N N 79 HOH O H2 sing N N 80 ILE N CA sing N N 81 ILE N H sing N N 82 ILE N H2 sing N N 83 ILE CA C sing N N 84 ILE CA CB sing N N 85 ILE CA HA sing N N 86 ILE C O doub N N 87 ILE C OXT sing N N 88 ILE CB CG1 sing N N 89 ILE CB CG2 sing N N 90 ILE CB HB sing N N 91 ILE CG1 CD1 sing N N 92 ILE CG1 HG12 sing N N 93 ILE CG1 HG13 sing N N 94 ILE CG2 HG21 sing N N 95 ILE CG2 HG22 sing N N 96 ILE CG2 HG23 sing N N 97 ILE CD1 HD11 sing N N 98 ILE CD1 HD12 sing N N 99 ILE CD1 HD13 sing N N 100 ILE OXT HXT sing N N 101 LEU N CA sing N N 102 LEU N H sing N N 103 LEU N H2 sing N N 104 LEU CA C sing N N 105 LEU CA CB sing N N 106 LEU CA HA sing N N 107 LEU C O doub N N 108 LEU C OXT sing N N 109 LEU CB CG sing N N 110 LEU CB HB2 sing N N 111 LEU CB HB3 sing N N 112 LEU CG CD1 sing N N 113 LEU CG CD2 sing N N 114 LEU CG HG sing N N 115 LEU CD1 HD11 sing N N 116 LEU CD1 HD12 sing N N 117 LEU CD1 HD13 sing N N 118 LEU CD2 HD21 sing N N 119 LEU CD2 HD22 sing N N 120 LEU CD2 HD23 sing N N 121 LEU OXT HXT sing N N 122 LYS N CA sing N N 123 LYS N H sing N N 124 LYS N H2 sing N N 125 LYS CA C sing N N 126 LYS CA CB sing N N 127 LYS CA HA sing N N 128 LYS C O doub N N 129 LYS C OXT sing N N 130 LYS CB CG sing N N 131 LYS CB HB2 sing N N 132 LYS CB HB3 sing N N 133 LYS CG CD sing N N 134 LYS CG HG2 sing N N 135 LYS CG HG3 sing N N 136 LYS CD CE sing N N 137 LYS CD HD2 sing N N 138 LYS CD HD3 sing N N 139 LYS CE NZ sing N N 140 LYS CE HE2 sing N N 141 LYS CE HE3 sing N N 142 LYS NZ HZ1 sing N N 143 LYS NZ HZ2 sing N N 144 LYS NZ HZ3 sing N N 145 LYS OXT HXT sing N N 146 SCN S C sing N N 147 SCN C N trip N N 148 SER N CA sing N N 149 SER N H sing N N 150 SER N H2 sing N N 151 SER CA C sing N N 152 SER CA CB sing N N 153 SER CA HA sing N N 154 SER C O doub N N 155 SER C OXT sing N N 156 SER CB OG sing N N 157 SER CB HB2 sing N N 158 SER CB HB3 sing N N 159 SER OG HG sing N N 160 SER OXT HXT sing N N 161 VAL N CA sing N N 162 VAL N H sing N N 163 VAL N H2 sing N N 164 VAL CA C sing N N 165 VAL CA CB sing N N 166 VAL CA HA sing N N 167 VAL C O doub N N 168 VAL C OXT sing N N 169 VAL CB CG1 sing N N 170 VAL CB CG2 sing N N 171 VAL CB HB sing N N 172 VAL CG1 HG11 sing N N 173 VAL CG1 HG12 sing N N 174 VAL CG1 HG13 sing N N 175 VAL CG2 HG21 sing N N 176 VAL CG2 HG22 sing N N 177 VAL CG2 HG23 sing N N 178 VAL OXT HXT sing N N 179 # _atom_sites.entry_id 6GS3 _atom_sites.fract_transf_matrix[1][1] 0.050761 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.015468 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035162 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.051447 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O S # loop_