HEADER OXIDOREDUCTASE 13-JUN-18 6GSB TITLE SPHINGOBACTERIUM SP. T2 MANGANESE SUPEROXIDE DISMUTASE CATALYSES THE TITLE 2 OXIDATIVE DEMETHYLATION OF POLYMERIC LIGNIN VIA GENERATION OF TITLE 3 HYDROXYL RADICAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBACTERIUM SPIRITIVORUM; SOURCE 3 ORGANISM_TAXID: 258; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, LIGNIN VALORISATION, LIGNIN OXIDATION, MANGANESE KEYWDS 2 KEYWDS 2 SUPEROXIDE DISMUTASE, SPHINGOBACTERIUM EXPDTA X-RAY DIFFRACTION AUTHOR G.M.RASHID,X.ZHANG,R.C.WILKINSON,V.FULOP,B.COTTYN,S.BAUMBERGER, AUTHOR 2 D.H.BUGG REVDAT 3 17-JAN-24 6GSB 1 LINK REVDAT 2 31-OCT-18 6GSB 1 JRNL REVDAT 1 03-OCT-18 6GSB 0 JRNL AUTH G.M.M.RASHID,X.ZHANG,R.C.WILKINSON,V.FULOP,B.COTTYN, JRNL AUTH 2 S.BAUMBERGER,T.D.H.BUGG JRNL TITL SPHINGOBACTERIUM SP. T2 MANGANESE SUPEROXIDE DISMUTASE JRNL TITL 2 CATALYZES THE OXIDATIVE DEMETHYLATION OF POLYMERIC LIGNIN JRNL TITL 3 VIA GENERATION OF HYDROXYL RADICAL. JRNL REF ACS CHEM. BIOL. V. 13 2920 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 30247873 JRNL DOI 10.1021/ACSCHEMBIO.8B00557 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.M.RASHID,C.R.TAYLOR,Y.LIU,X.ZHANG,D.REA,V.FULOP,T.D.BUGG REMARK 1 TITL IDENTIFICATION OF MANGANESE SUPEROXIDE DISMUTASE FROM REMARK 1 TITL 2 SPHINGOBACTERIUM SP. T2 AS A NOVEL BACTERIAL ENZYME FOR REMARK 1 TITL 3 LIGNIN OXIDATION. REMARK 1 REF ACS CHEM. BIOL. V. 10 2286 2015 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 26198187 REMARK 1 DOI 10.1021/ACSCHEMBIO.5B00298 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 68524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 626 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.050 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3328 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3098 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4524 ; 1.610 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7140 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;30.674 ;25.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;12.019 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3814 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 772 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2410 50.9840 10.7780 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.1089 REMARK 3 T33: 0.0580 T12: -0.0164 REMARK 3 T13: -0.0047 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.9697 L22: 0.9836 REMARK 3 L33: 1.1773 L12: -0.5019 REMARK 3 L13: -0.5729 L23: 0.4618 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: -0.0302 S13: 0.2104 REMARK 3 S21: -0.0626 S22: -0.0150 S23: -0.1238 REMARK 3 S31: -0.1226 S32: 0.0702 S33: -0.0587 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0290 45.8760 6.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.1256 REMARK 3 T33: 0.0355 T12: -0.0057 REMARK 3 T13: -0.0134 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.2593 L22: 1.4788 REMARK 3 L33: 0.2721 L12: -0.9749 REMARK 3 L13: 0.3792 L23: -0.3845 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.0744 S13: -0.0543 REMARK 3 S21: -0.0783 S22: -0.0173 S23: 0.1633 REMARK 3 S31: 0.0246 S32: -0.0429 S33: -0.0550 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8330 48.6010 13.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.1124 REMARK 3 T33: 0.0303 T12: -0.0127 REMARK 3 T13: -0.0001 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.3280 L22: 1.1481 REMARK 3 L33: 1.4699 L12: -0.4492 REMARK 3 L13: 0.3062 L23: -0.5445 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.0115 S13: 0.0790 REMARK 3 S21: -0.0408 S22: -0.0044 S23: 0.0314 REMARK 3 S31: -0.0153 S32: -0.0396 S33: -0.0324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5900 23.1830 29.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.1858 REMARK 3 T33: 0.0615 T12: -0.0058 REMARK 3 T13: -0.0079 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 2.4365 L22: 1.6087 REMARK 3 L33: 1.5978 L12: 0.2775 REMARK 3 L13: 0.5190 L23: 0.3787 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: -0.2089 S13: -0.2728 REMARK 3 S21: 0.0548 S22: -0.0536 S23: 0.1512 REMARK 3 S31: 0.0759 S32: -0.0287 S33: -0.0165 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7280 21.3120 23.0290 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.1978 REMARK 3 T33: 0.1304 T12: 0.0110 REMARK 3 T13: -0.0112 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.6138 L22: 1.1303 REMARK 3 L33: 0.9105 L12: -0.6624 REMARK 3 L13: 0.6444 L23: -0.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: -0.0002 S13: -0.2956 REMARK 3 S21: -0.0688 S22: -0.1107 S23: -0.1998 REMARK 3 S31: 0.0757 S32: 0.1403 S33: 0.0408 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 151 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9950 26.1720 27.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.2280 REMARK 3 T33: 0.0611 T12: -0.0137 REMARK 3 T13: -0.0180 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.5560 L22: 1.6056 REMARK 3 L33: 0.8046 L12: -0.4611 REMARK 3 L13: -0.0551 L23: -0.5027 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.2196 S13: -0.2098 REMARK 3 S21: -0.0006 S22: -0.0624 S23: -0.1192 REMARK 3 S31: 0.0428 S32: 0.0930 S33: 0.0355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: 5A9G REMARK 200 REMARK 200 REMARK: ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 160 MM AMMONIUM CITRATE DIBASIC, 26% REMARK 280 PEG 3350, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.54500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 404 O HOH B 554 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 -31.12 -139.44 REMARK 500 ASN A 143 -124.93 55.21 REMARK 500 TYR A 169 -4.27 -141.18 REMARK 500 GLN A 174 -127.24 48.35 REMARK 500 ALA B 17 -36.49 -132.67 REMARK 500 ASN B 143 -125.58 53.79 REMARK 500 GLN B 174 -128.77 48.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 76 NE2 95.6 REMARK 620 3 ASP A 163 OD2 87.7 111.0 REMARK 620 4 HIS A 167 NE2 91.1 132.9 115.9 REMARK 620 5 HOH A 302 O 173.3 87.9 85.7 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 76 NE2 89.9 REMARK 620 3 ASP B 163 OD2 85.8 111.1 REMARK 620 4 HIS B 167 NE2 94.5 131.8 117.1 REMARK 620 5 HOH B 302 O 172.7 91.6 86.9 89.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 DBREF1 6GSB A 23 202 UNP A0A0M3KL50_9SPHI DBREF2 6GSB A A0A0M3KL50 1 180 DBREF1 6GSB B 23 202 UNP A0A0M3KL50_9SPHI DBREF2 6GSB B A0A0M3KL50 1 180 SEQADV 6GSB ASP A -3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PRO A -2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PHE A -1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB THR A 0 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLN A 1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PHE A 2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LYS A 3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLN A 4 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB THR A 5 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PRO A 6 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LEU A 7 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PRO A 8 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB TYR A 9 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA A 10 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB TYR A 11 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ASP A 12 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA A 13 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LEU A 14 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLU A 15 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLY A 16 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA A 17 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ILE A 18 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ASP A 19 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA A 20 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LYS A 21 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB THR A 22 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB HIS A 27 UNP A0A0M3KL5 TYR 5 ENGINEERED MUTATION SEQADV 6GSB ASP B -3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PRO B -2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PHE B -1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB THR B 0 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLN B 1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PHE B 2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LYS B 3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLN B 4 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB THR B 5 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PRO B 6 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LEU B 7 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB PRO B 8 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB TYR B 9 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA B 10 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB TYR B 11 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ASP B 12 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA B 13 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LEU B 14 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLU B 15 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB GLY B 16 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA B 17 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ILE B 18 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ASP B 19 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB ALA B 20 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB LYS B 21 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB THR B 22 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSB HIS B 27 UNP A0A0M3KL5 TYR 5 ENGINEERED MUTATION SEQRES 1 A 206 ASP PRO PHE THR GLN PHE LYS GLN THR PRO LEU PRO TYR SEQRES 2 A 206 ALA TYR ASP ALA LEU GLU GLY ALA ILE ASP ALA LYS THR SEQRES 3 A 206 MET GLU ILE HIS HIS SER LYS HIS ALA ALA GLY TYR THR SEQRES 4 A 206 ALA ASN LEU ASN LYS ALA ILE ALA GLY THR PRO ALA GLU SEQRES 5 A 206 LYS GLU SER ILE GLU ASN ILE LEU ALA LYS VAL SER GLN SEQRES 6 A 206 TYR SER ASP ALA VAL ARG ASN ASN ALA GLY GLY HIS TYR SEQRES 7 A 206 ASN HIS GLU LEU PHE TRP SER ILE LEU THR PRO ASN LYS SEQRES 8 A 206 GLY THR LYS PRO SER ALA ALA LEU GLN LYS ALA ILE ASP SEQRES 9 A 206 GLU THR PHE GLY SER LEU ASP ALA LEU LYS GLU LYS ILE SEQRES 10 A 206 ASN ALA ALA GLY ALA ALA ARG PHE GLY SER GLY TRP ALA SEQRES 11 A 206 TRP LEU ILE VAL ASP ASN GLY GLY LYS LEU GLN VAL THR SEQRES 12 A 206 SER THR PRO ASN GLN ASP ASN PRO LEU MET ASP PHE THR SEQRES 13 A 206 LYS GLU LYS GLY THR PRO ILE LEU GLY ILE ASP VAL TRP SEQRES 14 A 206 GLU HIS ALA TYR TYR LEU ARG TYR GLN ASN LYS ARG ALA SEQRES 15 A 206 ASP TYR LEU THR THR ILE TRP ASP VAL ILE ASN TRP GLU SEQRES 16 A 206 GLU VAL SER ALA ARG TYR GLU LYS ALA LEU LYS SEQRES 1 B 206 ASP PRO PHE THR GLN PHE LYS GLN THR PRO LEU PRO TYR SEQRES 2 B 206 ALA TYR ASP ALA LEU GLU GLY ALA ILE ASP ALA LYS THR SEQRES 3 B 206 MET GLU ILE HIS HIS SER LYS HIS ALA ALA GLY TYR THR SEQRES 4 B 206 ALA ASN LEU ASN LYS ALA ILE ALA GLY THR PRO ALA GLU SEQRES 5 B 206 LYS GLU SER ILE GLU ASN ILE LEU ALA LYS VAL SER GLN SEQRES 6 B 206 TYR SER ASP ALA VAL ARG ASN ASN ALA GLY GLY HIS TYR SEQRES 7 B 206 ASN HIS GLU LEU PHE TRP SER ILE LEU THR PRO ASN LYS SEQRES 8 B 206 GLY THR LYS PRO SER ALA ALA LEU GLN LYS ALA ILE ASP SEQRES 9 B 206 GLU THR PHE GLY SER LEU ASP ALA LEU LYS GLU LYS ILE SEQRES 10 B 206 ASN ALA ALA GLY ALA ALA ARG PHE GLY SER GLY TRP ALA SEQRES 11 B 206 TRP LEU ILE VAL ASP ASN GLY GLY LYS LEU GLN VAL THR SEQRES 12 B 206 SER THR PRO ASN GLN ASP ASN PRO LEU MET ASP PHE THR SEQRES 13 B 206 LYS GLU LYS GLY THR PRO ILE LEU GLY ILE ASP VAL TRP SEQRES 14 B 206 GLU HIS ALA TYR TYR LEU ARG TYR GLN ASN LYS ARG ALA SEQRES 15 B 206 ASP TYR LEU THR THR ILE TRP ASP VAL ILE ASN TRP GLU SEQRES 16 B 206 GLU VAL SER ALA ARG TYR GLU LYS ALA LEU LYS HET MN A 301 1 HET MN B 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *626(H2 O) HELIX 1 AA1 ASP A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 ALA A 43 1 15 HELIX 3 AA3 SER A 51 LYS A 58 1 8 HELIX 4 AA4 VAL A 59 TYR A 62 5 4 HELIX 5 AA5 SER A 63 ILE A 82 1 20 HELIX 6 AA6 SER A 92 GLY A 104 1 13 HELIX 7 AA7 SER A 105 ARG A 120 1 16 HELIX 8 AA8 TRP A 165 ALA A 168 5 4 HELIX 9 AA9 TYR A 169 GLN A 174 1 6 HELIX 10 AB1 LYS A 176 TRP A 185 1 10 HELIX 11 AB2 ASP A 186 ILE A 188 5 3 HELIX 12 AB3 ASN A 189 LYS A 202 1 14 HELIX 13 AB4 ASP B 19 LYS B 29 1 11 HELIX 14 AB5 LYS B 29 ALA B 43 1 15 HELIX 15 AB6 THR B 45 GLU B 50 5 6 HELIX 16 AB7 SER B 51 LYS B 58 1 8 HELIX 17 AB8 VAL B 59 TYR B 62 5 4 HELIX 18 AB9 SER B 63 ILE B 82 1 20 HELIX 19 AC1 SER B 92 GLY B 104 1 13 HELIX 20 AC2 SER B 105 ARG B 120 1 16 HELIX 21 AC3 TRP B 165 ALA B 168 5 4 HELIX 22 AC4 TYR B 169 GLN B 174 1 6 HELIX 23 AC5 LYS B 176 TRP B 185 1 10 HELIX 24 AC6 ASP B 186 ILE B 188 5 3 HELIX 25 AC7 ASN B 189 LYS B 202 1 14 SHEET 1 AA1 3 LEU A 136 PRO A 142 0 SHEET 2 AA1 3 GLY A 124 VAL A 130 -1 N TRP A 127 O THR A 139 SHEET 3 AA1 3 THR A 157 ASP A 163 -1 O ILE A 159 N LEU A 128 SHEET 1 AA2 3 LEU B 136 PRO B 142 0 SHEET 2 AA2 3 GLY B 124 ASP B 131 -1 N TRP B 127 O THR B 139 SHEET 3 AA2 3 GLY B 156 ASP B 163 -1 O ILE B 159 N LEU B 128 LINK NE2 HIS A 26 MN MN A 301 1555 1555 2.15 LINK NE2 HIS A 76 MN MN A 301 1555 1555 2.11 LINK OD2 ASP A 163 MN MN A 301 1555 1555 2.03 LINK NE2 HIS A 167 MN MN A 301 1555 1555 2.12 LINK MN MN A 301 O HOH A 302 1555 1555 2.30 LINK NE2 HIS B 26 MN MN B 301 1555 1555 2.16 LINK NE2 HIS B 76 MN MN B 301 1555 1555 2.18 LINK OD2 ASP B 163 MN MN B 301 1555 1555 2.03 LINK NE2 HIS B 167 MN MN B 301 1555 1555 2.17 LINK MN MN B 301 O HOH B 302 1555 1555 2.23 SITE 1 AC1 5 HIS A 26 HIS A 76 ASP A 163 HIS A 167 SITE 2 AC1 5 HOH A 302 SITE 1 AC2 5 HIS B 26 HIS B 76 ASP B 163 HIS B 167 SITE 2 AC2 5 HOH B 302 CRYST1 46.680 59.090 75.210 90.00 90.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021422 0.000000 0.000176 0.00000 SCALE2 0.000000 0.016923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013297 0.00000