HEADER OXIDOREDUCTASE 13-JUN-18 6GSC TITLE SPHINGOBACTERIUM SP. T2 MANGANESE SUPEROXIDE DISMUTASE CATALYSES THE TITLE 2 OXIDATIVE DEMETHYLATION OF POLYMERIC LIGNIN VIA GENERATION OF TITLE 3 HYDROXYL RADICAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 9 CHAIN: B; COMPND 10 EC: 1.15.1.1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBACTERIUM SPIRITIVORUM; SOURCE 3 ORGANISM_TAXID: 258; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SPHINGOBACTERIUM SPIRITIVORUM; SOURCE 8 ORGANISM_TAXID: 258; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, LIGNIN VALORISATION, LIGNIN OXIDATION, MANGANESE KEYWDS 2 KEYWDS 2 SUPEROXIDE DISMUTASE, SPHINGOBACTERIUM EXPDTA X-RAY DIFFRACTION AUTHOR G.M.M.RASHID,X.ZHANG,R.C.WILKINSON,V.FULOP,B.COTTYN,S.BAUMBERGER, AUTHOR 2 T.D.H.BUGG REVDAT 4 17-JAN-24 6GSC 1 LINK REVDAT 3 12-JUN-19 6GSC 1 AUTHOR REVDAT 2 31-OCT-18 6GSC 1 JRNL REVDAT 1 03-OCT-18 6GSC 0 JRNL AUTH G.M.M.RASHID,X.ZHANG,R.C.WILKINSON,V.FULOP,B.COTTYN, JRNL AUTH 2 S.BAUMBERGER,T.D.H.BUGG JRNL TITL SPHINGOBACTERIUM SP. T2 MANGANESE SUPEROXIDE DISMUTASE JRNL TITL 2 CATALYZES THE OXIDATIVE DEMETHYLATION OF POLYMERIC LIGNIN JRNL TITL 3 VIA GENERATION OF HYDROXYL RADICAL. JRNL REF ACS CHEM. BIOL. V. 13 2920 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 30247873 JRNL DOI 10.1021/ACSCHEMBIO.8B00557 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.M.RASHID,C.R.TAYLOR,Y.LIU,X.ZHANG,D.REA,V.FULOP,T.D.BUGG REMARK 1 TITL IDENTIFICATION OF MANGANESE SUPEROXIDE DISMUTASE FROM REMARK 1 TITL 2 SPHINGOBACTERIUM SP. T2 AS A NOVEL BACTERIAL ENZYME FOR REMARK 1 TITL 3 LIGNIN OXIDATION. REMARK 1 REF ACS CHEM. BIOL. V. 10 2286 2015 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 26198187 REMARK 1 DOI 10.1021/ACSCHEMBIO.5B00298 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 90988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 275 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 588 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.756 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3335 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3091 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4535 ; 1.583 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7123 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;32.119 ;25.063 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;11.451 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3823 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 779 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GSC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.95100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: 5A9G REMARK 200 REMARK 200 REMARK: ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 130 MM AMMONIUM CITRATE, 26% PEG 3350, REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.30500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 628 O HOH B 550 2655 2.16 REMARK 500 O HOH A 550 O HOH B 458 1565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 120 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 -28.19 -140.71 REMARK 500 ASN A 143 -127.63 58.93 REMARK 500 TYR A 169 -3.79 -140.61 REMARK 500 GLN A 174 -128.88 45.75 REMARK 500 ALA B 17 -38.92 -132.92 REMARK 500 ASN B 143 -128.62 56.47 REMARK 500 TYR B 169 -4.70 -142.69 REMARK 500 GLN B 174 -127.70 45.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 707 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 708 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 709 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 76 NE2 81.5 REMARK 620 3 ASP A 163 OD2 85.4 108.9 REMARK 620 4 HIS A 167 NE2 95.7 132.3 118.3 REMARK 620 5 HOH A 302 O 174.7 97.8 89.8 88.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 76 NE2 79.1 REMARK 620 3 ASP B 163 OD2 86.7 109.4 REMARK 620 4 HIS B 167 NE2 97.2 130.9 119.3 REMARK 620 5 HOH B 302 O 174.9 99.2 89.3 87.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 DBREF1 6GSC A 23 201 UNP A0A0M3KL50_9SPHI DBREF2 6GSC A A0A0M3KL50 1 179 DBREF1 6GSC B 23 202 UNP A0A0M3KL50_9SPHI DBREF2 6GSC B A0A0M3KL50 1 180 SEQADV 6GSC ASP A -3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PRO A -2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PHE A -1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC THR A 0 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLN A 1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PHE A 2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LYS A 3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLN A 4 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC THR A 5 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PRO A 6 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LEU A 7 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PRO A 8 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC TYR A 9 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA A 10 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC TYR A 11 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ASP A 12 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA A 13 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LEU A 14 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLU A 15 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLY A 16 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA A 17 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ILE A 18 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ASP A 19 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA A 20 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LYS A 21 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC THR A 22 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC HIS A 31 UNP A0A0M3KL5 ALA 9 ENGINEERED MUTATION SEQADV 6GSC ASP B -3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PRO B -2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PHE B -1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC THR B 0 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLN B 1 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PHE B 2 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LYS B 3 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLN B 4 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC THR B 5 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PRO B 6 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LEU B 7 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC PRO B 8 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC TYR B 9 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA B 10 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC TYR B 11 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ASP B 12 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA B 13 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LEU B 14 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLU B 15 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC GLY B 16 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA B 17 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ILE B 18 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ASP B 19 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC ALA B 20 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC LYS B 21 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC THR B 22 UNP A0A0M3KL5 EXPRESSION TAG SEQADV 6GSC HIS B 31 UNP A0A0M3KL5 ALA 9 ENGINEERED MUTATION SEQRES 1 A 205 ASP PRO PHE THR GLN PHE LYS GLN THR PRO LEU PRO TYR SEQRES 2 A 205 ALA TYR ASP ALA LEU GLU GLY ALA ILE ASP ALA LYS THR SEQRES 3 A 205 MET GLU ILE HIS TYR SER LYS HIS HIS ALA GLY TYR THR SEQRES 4 A 205 ALA ASN LEU ASN LYS ALA ILE ALA GLY THR PRO ALA GLU SEQRES 5 A 205 LYS GLU SER ILE GLU ASN ILE LEU ALA LYS VAL SER GLN SEQRES 6 A 205 TYR SER ASP ALA VAL ARG ASN ASN ALA GLY GLY HIS TYR SEQRES 7 A 205 ASN HIS GLU LEU PHE TRP SER ILE LEU THR PRO ASN LYS SEQRES 8 A 205 GLY THR LYS PRO SER ALA ALA LEU GLN LYS ALA ILE ASP SEQRES 9 A 205 GLU THR PHE GLY SER LEU ASP ALA LEU LYS GLU LYS ILE SEQRES 10 A 205 ASN ALA ALA GLY ALA ALA ARG PHE GLY SER GLY TRP ALA SEQRES 11 A 205 TRP LEU ILE VAL ASP ASN GLY GLY LYS LEU GLN VAL THR SEQRES 12 A 205 SER THR PRO ASN GLN ASP ASN PRO LEU MET ASP PHE THR SEQRES 13 A 205 LYS GLU LYS GLY THR PRO ILE LEU GLY ILE ASP VAL TRP SEQRES 14 A 205 GLU HIS ALA TYR TYR LEU ARG TYR GLN ASN LYS ARG ALA SEQRES 15 A 205 ASP TYR LEU THR THR ILE TRP ASP VAL ILE ASN TRP GLU SEQRES 16 A 205 GLU VAL SER ALA ARG TYR GLU LYS ALA LEU SEQRES 1 B 206 ASP PRO PHE THR GLN PHE LYS GLN THR PRO LEU PRO TYR SEQRES 2 B 206 ALA TYR ASP ALA LEU GLU GLY ALA ILE ASP ALA LYS THR SEQRES 3 B 206 MET GLU ILE HIS TYR SER LYS HIS HIS ALA GLY TYR THR SEQRES 4 B 206 ALA ASN LEU ASN LYS ALA ILE ALA GLY THR PRO ALA GLU SEQRES 5 B 206 LYS GLU SER ILE GLU ASN ILE LEU ALA LYS VAL SER GLN SEQRES 6 B 206 TYR SER ASP ALA VAL ARG ASN ASN ALA GLY GLY HIS TYR SEQRES 7 B 206 ASN HIS GLU LEU PHE TRP SER ILE LEU THR PRO ASN LYS SEQRES 8 B 206 GLY THR LYS PRO SER ALA ALA LEU GLN LYS ALA ILE ASP SEQRES 9 B 206 GLU THR PHE GLY SER LEU ASP ALA LEU LYS GLU LYS ILE SEQRES 10 B 206 ASN ALA ALA GLY ALA ALA ARG PHE GLY SER GLY TRP ALA SEQRES 11 B 206 TRP LEU ILE VAL ASP ASN GLY GLY LYS LEU GLN VAL THR SEQRES 12 B 206 SER THR PRO ASN GLN ASP ASN PRO LEU MET ASP PHE THR SEQRES 13 B 206 LYS GLU LYS GLY THR PRO ILE LEU GLY ILE ASP VAL TRP SEQRES 14 B 206 GLU HIS ALA TYR TYR LEU ARG TYR GLN ASN LYS ARG ALA SEQRES 15 B 206 ASP TYR LEU THR THR ILE TRP ASP VAL ILE ASN TRP GLU SEQRES 16 B 206 GLU VAL SER ALA ARG TYR GLU LYS ALA LEU LYS HET MN A 301 1 HET MN B 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *588(H2 O) HELIX 1 AA1 ASP A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 ALA A 43 1 15 HELIX 3 AA3 SER A 51 LYS A 58 1 8 HELIX 4 AA4 VAL A 59 TYR A 62 5 4 HELIX 5 AA5 SER A 63 ILE A 82 1 20 HELIX 6 AA6 SER A 92 GLY A 104 1 13 HELIX 7 AA7 SER A 105 ARG A 120 1 16 HELIX 8 AA8 TRP A 165 ALA A 168 5 4 HELIX 9 AA9 TYR A 169 GLN A 174 1 6 HELIX 10 AB1 LYS A 176 TRP A 185 1 10 HELIX 11 AB2 ASP A 186 ILE A 188 5 3 HELIX 12 AB3 ASN A 189 LEU A 201 1 13 HELIX 13 AB4 ASP B 19 LYS B 29 1 11 HELIX 14 AB5 LYS B 29 ALA B 43 1 15 HELIX 15 AB6 SER B 51 LYS B 58 1 8 HELIX 16 AB7 VAL B 59 TYR B 62 5 4 HELIX 17 AB8 SER B 63 ILE B 82 1 20 HELIX 18 AB9 SER B 92 GLY B 104 1 13 HELIX 19 AC1 SER B 105 ARG B 120 1 16 HELIX 20 AC2 TRP B 165 ALA B 168 5 4 HELIX 21 AC3 TYR B 169 GLN B 174 1 6 HELIX 22 AC4 LYS B 176 TRP B 185 1 10 HELIX 23 AC5 ASP B 186 ILE B 188 5 3 HELIX 24 AC6 ASN B 189 LYS B 202 1 14 SHEET 1 AA1 3 LEU A 136 PRO A 142 0 SHEET 2 AA1 3 GLY A 124 VAL A 130 -1 N TRP A 127 O THR A 139 SHEET 3 AA1 3 THR A 157 ASP A 163 -1 O ILE A 159 N LEU A 128 SHEET 1 AA2 3 LEU B 136 PRO B 142 0 SHEET 2 AA2 3 GLY B 124 VAL B 130 -1 N TRP B 127 O THR B 139 SHEET 3 AA2 3 THR B 157 ASP B 163 -1 O ILE B 159 N LEU B 128 LINK NE2 HIS A 26 MN MN A 301 1555 1555 2.18 LINK NE2 HIS A 76 MN MN A 301 1555 1555 2.32 LINK OD2 ASP A 163 MN MN A 301 1555 1555 1.89 LINK NE2 HIS A 167 MN MN A 301 1555 1555 2.25 LINK MN MN A 301 O HOH A 302 1555 1555 1.96 LINK NE2 HIS B 26 MN MN B 301 1555 1555 2.21 LINK NE2 HIS B 76 MN MN B 301 1555 1555 2.32 LINK OD2 ASP B 163 MN MN B 301 1555 1555 1.85 LINK NE2 HIS B 167 MN MN B 301 1555 1555 2.30 LINK MN MN B 301 O HOH B 302 1555 1555 1.97 SITE 1 AC1 5 HIS A 26 HIS A 76 ASP A 163 HIS A 167 SITE 2 AC1 5 HOH A 302 SITE 1 AC2 5 HIS B 26 HIS B 76 ASP B 163 HIS B 167 SITE 2 AC2 5 HOH B 302 CRYST1 46.530 58.610 75.070 90.00 90.37 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021492 0.000000 0.000139 0.00000 SCALE2 0.000000 0.017062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013321 0.00000