HEADER TRANSCRIPTION 18-JUN-18 6GTQ TITLE STRUCTURE OF THE ATAT Y144F MUTANT TOXIN BOUND TO THE C-TERMINUS OF TITLE 2 THE ANTITOXIN ATAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DUF1778 DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: TOXIN-ANTITOXIN SYSTEM,ANTITOXIN COMPONENT,RIBBON-HELIX- COMPND 9 HELIX FOLD PROTEIN,YBL13; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BWP17_00640, CVH05_12355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562 KEYWDS TA TOXIN, ANTITOXIN, N-ACETYL TRANSFERASE, RIBBON-HELIX-HELIX, RHH, KEYWDS 2 BACTERIAL REPRESSOR, TRANSCRIPTION, TOXIN-ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO,D.JURENAS REVDAT 2 17-JAN-24 6GTQ 1 REMARK REVDAT 1 06-MAR-19 6GTQ 0 JRNL AUTH D.JURENAS,L.VAN MELDEREN,A.GARCIA-PINO JRNL TITL MECHANISM OF REGULATION AND NEUTRALIZATION OF THE ATAR-ATAT JRNL TITL 2 TOXIN-ANTITOXIN SYSTEM. JRNL REF NAT. CHEM. BIOL. V. 15 285 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 30718814 JRNL DOI 10.1038/S41589-018-0216-Z REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2814 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2488 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2673 REMARK 3 BIN R VALUE (WORKING SET) : 0.2476 REMARK 3 BIN FREE R VALUE : 0.2714 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.21590 REMARK 3 B22 (A**2) : -5.21590 REMARK 3 B33 (A**2) : 10.43190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.377 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.243 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.343 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.239 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3144 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4256 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1067 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 536 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3144 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 416 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3625 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.7695 2.5968 0.0354 REMARK 3 T TENSOR REMARK 3 T11: 0.0573 T22: -0.2089 REMARK 3 T33: -0.1479 T12: 0.0654 REMARK 3 T13: 0.0706 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.1779 L22: 4.3975 REMARK 3 L33: 3.0834 L12: -0.9348 REMARK 3 L13: -0.8746 L23: 2.1306 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: 0.1372 S13: 0.0891 REMARK 3 S21: -0.5461 S22: 0.0464 S23: -0.1543 REMARK 3 S31: -0.3571 S32: 0.1525 S33: -0.1096 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -49.8908 -8.7399 25.2609 REMARK 3 T TENSOR REMARK 3 T11: -0.0115 T22: -0.2438 REMARK 3 T33: -0.1461 T12: 0.0382 REMARK 3 T13: 0.0791 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.1126 L22: 5.0917 REMARK 3 L33: 3.9416 L12: 0.0110 REMARK 3 L13: -1.3247 L23: -1.6535 REMARK 3 S TENSOR REMARK 3 S11: 0.2563 S12: -0.0876 S13: 0.1396 REMARK 3 S21: 0.4891 S22: -0.0005 S23: 0.2711 REMARK 3 S31: -0.5036 S32: -0.1021 S33: -0.2557 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -43.5758 12.5535 7.1675 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: -0.2138 REMARK 3 T33: -0.0622 T12: 0.1139 REMARK 3 T13: 0.0410 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 3.8400 L22: 4.6443 REMARK 3 L33: 2.5900 L12: 0.1339 REMARK 3 L13: 0.3738 L23: 2.6589 REMARK 3 S TENSOR REMARK 3 S11: 0.1515 S12: 0.0666 S13: 0.1664 REMARK 3 S21: -0.3022 S22: -0.0720 S23: 0.0296 REMARK 3 S31: -0.0358 S32: -0.0902 S33: -0.0795 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.2550 -15.7923 22.4036 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: -0.1730 REMARK 3 T33: -0.0589 T12: 0.0629 REMARK 3 T13: 0.0367 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.9207 L22: 3.2602 REMARK 3 L33: 4.2762 L12: -1.2396 REMARK 3 L13: 1.6281 L23: -0.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0576 S13: -0.0457 REMARK 3 S21: -0.0042 S22: -0.0739 S23: -0.1168 REMARK 3 S31: -0.0237 S32: 0.1189 S33: 0.0798 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GTP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE, 20%(W/V) PEG 6000, PH REMARK 280 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.82667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.65333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.65333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.82667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 ALA A 72 REMARK 465 LEU A 73 REMARK 465 PRO A 74 REMARK 465 SER A 75 REMARK 465 LYS A 76 REMARK 465 SER A 77 REMARK 465 LYS A 78 REMARK 465 GLN A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 ILE A 82 REMARK 465 PRO A 83 REMARK 465 SER A 173 REMARK 465 ASP A 174 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 ASN B 51 REMARK 465 THR B 52 REMARK 465 PRO B 53 REMARK 465 ALA B 72 REMARK 465 LEU B 73 REMARK 465 PRO B 74 REMARK 465 SER B 75 REMARK 465 LYS B 76 REMARK 465 SER B 77 REMARK 465 LYS B 78 REMARK 465 GLN B 79 REMARK 465 LYS B 80 REMARK 465 LYS B 81 REMARK 465 ILE B 82 REMARK 465 PRO B 83 REMARK 465 TYR B 84 REMARK 465 MET C 42 REMARK 465 ALA C 43 REMARK 465 ALA C 44 REMARK 465 GLU C 45 REMARK 465 VAL C 46 REMARK 465 ILE C 47 REMARK 465 GLU C 48 REMARK 465 GLN C 49 REMARK 465 MET D 42 REMARK 465 ALA D 43 REMARK 465 ALA D 44 REMARK 465 GLU D 45 REMARK 465 VAL D 46 REMARK 465 ILE D 47 REMARK 465 GLU D 48 REMARK 465 GLN D 49 REMARK 465 HIS D 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG A 50 CD NE CZ NH1 NH2 REMARK 470 CYS A 67 SG REMARK 470 PHE A 68 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 TYR A 84 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LEU A 135 CG CD1 CD2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 154 CD OE1 OE2 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 ASP B 11 CG OD1 OD2 REMARK 470 GLN B 17 CG CD OE1 NE2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 56 CG CD OE1 NE2 REMARK 470 CYS B 67 SG REMARK 470 ASN B 86 OD1 ND2 REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 470 LYS B 164 CD CE NZ REMARK 470 HIS C 50 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 52 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 55 CD1 CD2 REMARK 470 ARG D 51 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 53 CG1 CG2 REMARK 470 LYS D 82 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 173 65.56 -165.99 REMARK 500 GLU C 57 -78.56 -130.11 REMARK 500 GLU D 57 -60.26 -142.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 379 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 380 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH B 379 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 380 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 381 DISTANCE = 9.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 209 DBREF1 6GTQ A 1 174 UNP A0A1V3CQ74_ECOLX DBREF2 6GTQ A A0A1V3CQ74 2 175 DBREF1 6GTQ B 1 174 UNP A0A1V3CQ74_ECOLX DBREF2 6GTQ B A0A1V3CQ74 2 175 DBREF 6GTQ C 43 87 UNP J7QA90 J7QA90_ECOLX 44 88 DBREF 6GTQ D 43 87 UNP J7QA90 J7QA90_ECOLX 44 88 SEQADV 6GTQ MET A -3 UNP A0A1V3CQ7 INITIATING METHIONINE SEQADV 6GTQ GLY A -2 UNP A0A1V3CQ7 EXPRESSION TAG SEQADV 6GTQ ALA A -1 UNP A0A1V3CQ7 EXPRESSION TAG SEQADV 6GTQ SER A 0 UNP A0A1V3CQ7 EXPRESSION TAG SEQADV 6GTQ PHE A 143 UNP A0A1V3CQ7 TYR 144 ENGINEERED MUTATION SEQADV 6GTQ MET B -3 UNP A0A1V3CQ7 INITIATING METHIONINE SEQADV 6GTQ GLY B -2 UNP A0A1V3CQ7 EXPRESSION TAG SEQADV 6GTQ ALA B -1 UNP A0A1V3CQ7 EXPRESSION TAG SEQADV 6GTQ SER B 0 UNP A0A1V3CQ7 EXPRESSION TAG SEQADV 6GTQ PHE B 143 UNP A0A1V3CQ7 TYR 144 ENGINEERED MUTATION SEQADV 6GTQ MET C 42 UNP J7QA90 INITIATING METHIONINE SEQADV 6GTQ MET D 42 UNP J7QA90 INITIATING METHIONINE SEQRES 1 A 178 MET GLY ALA SER ASP ASP LEU THR ILE GLU ILE LEU THR SEQRES 2 A 178 ASP ASP ALA ASP TYR ASP LEU GLN ARG PHE ASP CYS GLY SEQRES 3 A 178 GLU GLU ALA LEU ASN LEU PHE LEU THR THR HIS LEU VAL SEQRES 4 A 178 ARG GLN HIS ARG ASN LYS ILE LEU ARG ALA TYR ILE LEU SEQRES 5 A 178 CYS ARG ASN THR PRO GLU ARG GLN VAL LEU GLY TYR TYR SEQRES 6 A 178 THR LEU CYS GLY SER CYS PHE GLU ARG ALA ALA LEU PRO SEQRES 7 A 178 SER LYS SER LYS GLN LYS LYS ILE PRO TYR LYS ASN ILE SEQRES 8 A 178 PRO SER VAL THR LEU GLY ARG LEU ALA ILE ASP ARG SER SEQRES 9 A 178 LEU GLN GLY GLN GLY TRP GLY ALA THR LEU VAL ALA HIS SEQRES 10 A 178 ALA MET ASN VAL VAL TRP SER ALA SER LEU ALA VAL GLY SEQRES 11 A 178 ILE HIS GLY LEU PHE VAL GLU ALA LEU ASN GLU LYS ALA SEQRES 12 A 178 HIS THR PHE PHE LYS SER LEU GLY PHE ILE PRO LEU VAL SEQRES 13 A 178 GLY GLU ASN GLU ASN ALA LEU PHE PHE PRO THR LYS SER SEQRES 14 A 178 ILE GLU LEU LEU PHE THR GLN SER ASP SEQRES 1 B 178 MET GLY ALA SER ASP ASP LEU THR ILE GLU ILE LEU THR SEQRES 2 B 178 ASP ASP ALA ASP TYR ASP LEU GLN ARG PHE ASP CYS GLY SEQRES 3 B 178 GLU GLU ALA LEU ASN LEU PHE LEU THR THR HIS LEU VAL SEQRES 4 B 178 ARG GLN HIS ARG ASN LYS ILE LEU ARG ALA TYR ILE LEU SEQRES 5 B 178 CYS ARG ASN THR PRO GLU ARG GLN VAL LEU GLY TYR TYR SEQRES 6 B 178 THR LEU CYS GLY SER CYS PHE GLU ARG ALA ALA LEU PRO SEQRES 7 B 178 SER LYS SER LYS GLN LYS LYS ILE PRO TYR LYS ASN ILE SEQRES 8 B 178 PRO SER VAL THR LEU GLY ARG LEU ALA ILE ASP ARG SER SEQRES 9 B 178 LEU GLN GLY GLN GLY TRP GLY ALA THR LEU VAL ALA HIS SEQRES 10 B 178 ALA MET ASN VAL VAL TRP SER ALA SER LEU ALA VAL GLY SEQRES 11 B 178 ILE HIS GLY LEU PHE VAL GLU ALA LEU ASN GLU LYS ALA SEQRES 12 B 178 HIS THR PHE PHE LYS SER LEU GLY PHE ILE PRO LEU VAL SEQRES 13 B 178 GLY GLU ASN GLU ASN ALA LEU PHE PHE PRO THR LYS SER SEQRES 14 B 178 ILE GLU LEU LEU PHE THR GLN SER ASP SEQRES 1 C 46 MET ALA ALA GLU VAL ILE GLU GLN HIS ARG ARG VAL ILE SEQRES 2 C 46 LEU ASN GLU GLU SER TRP THR ARG VAL MET ASP ALA LEU SEQRES 3 C 46 SER ASN PRO PRO SER PRO GLY GLU LYS LEU LYS ARG ALA SEQRES 4 C 46 ALA LYS ARG LEU GLN GLY MET SEQRES 1 D 46 MET ALA ALA GLU VAL ILE GLU GLN HIS ARG ARG VAL ILE SEQRES 2 D 46 LEU ASN GLU GLU SER TRP THR ARG VAL MET ASP ALA LEU SEQRES 3 D 46 SER ASN PRO PRO SER PRO GLY GLU LYS LEU LYS ARG ALA SEQRES 4 D 46 ALA LYS ARG LEU GLN GLY MET HET CL A 201 1 HET GOL A 202 6 HET PO4 A 203 5 HET ACT A 204 4 HET ACT A 205 4 HET CL B 201 1 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HET FLC B 205 13 HET ACT B 206 4 HET ACT B 207 4 HET ACT B 208 4 HET IOD B 209 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM FLC CITRATE ANION HETNAM IOD IODIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL 2(CL 1-) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 7 PO4 O4 P 3- FORMUL 8 ACT 5(C2 H3 O2 1-) FORMUL 14 FLC C6 H5 O7 3- FORMUL 18 IOD I 1- FORMUL 19 HOH *214(H2 O) HELIX 1 AA1 GLU A 23 HIS A 33 1 11 HELIX 2 AA2 HIS A 33 ASN A 40 1 8 HELIX 3 AA3 GLY A 105 GLY A 126 1 22 HELIX 4 AA4 ASN A 136 LEU A 146 1 11 HELIX 5 AA5 VAL A 152 GLU A 156 5 5 HELIX 6 AA6 THR A 163 GLN A 172 1 10 HELIX 7 AA7 GLU B 23 HIS B 33 1 11 HELIX 8 AA8 HIS B 33 ASN B 40 1 8 HELIX 9 AA9 ARG B 99 GLN B 102 5 4 HELIX 10 AB1 GLY B 105 GLY B 126 1 22 HELIX 11 AB2 ASN B 136 SER B 145 1 10 HELIX 12 AB3 VAL B 152 GLU B 156 5 5 HELIX 13 AB4 THR B 163 GLN B 172 1 10 HELIX 14 AB5 GLU C 58 ASN C 69 1 12 HELIX 15 AB6 GLY C 74 GLY C 86 1 13 HELIX 16 AB7 GLU D 58 ASN D 69 1 12 HELIX 17 AB8 GLY D 74 GLY D 86 1 13 SHEET 1 AA1 7 THR A 4 ILE A 7 0 SHEET 2 AA1 7 ARG A 44 CYS A 49 -1 O ILE A 47 N GLU A 6 SHEET 3 AA1 7 VAL A 57 ARG A 70 -1 O GLY A 59 N LEU A 48 SHEET 4 AA1 7 ASN A 86 ILE A 97 -1 O THR A 91 N CYS A 64 SHEET 5 AA1 7 GLY A 129 GLU A 133 1 O PHE A 131 N LEU A 92 SHEET 6 AA1 7 ALA A 158 PRO A 162 -1 O PHE A 161 N LEU A 130 SHEET 7 AA1 7 ILE A 149 PRO A 150 -1 N ILE A 149 O PHE A 160 SHEET 1 AA2 4 THR A 4 ILE A 7 0 SHEET 2 AA2 4 ARG A 44 CYS A 49 -1 O ILE A 47 N GLU A 6 SHEET 3 AA2 4 VAL A 57 ARG A 70 -1 O GLY A 59 N LEU A 48 SHEET 4 AA2 4 VAL C 53 ASN C 56 1 O ILE C 54 N GLU A 69 SHEET 1 AA3 7 THR B 4 ILE B 7 0 SHEET 2 AA3 7 ARG B 44 CYS B 49 -1 O ILE B 47 N GLU B 6 SHEET 3 AA3 7 GLY B 59 ARG B 70 -1 O GLY B 59 N LEU B 48 SHEET 4 AA3 7 ASN B 86 ILE B 97 -1 O THR B 91 N CYS B 64 SHEET 5 AA3 7 GLY B 129 GLU B 133 1 O PHE B 131 N LEU B 92 SHEET 6 AA3 7 ALA B 158 PRO B 162 -1 O PHE B 161 N LEU B 130 SHEET 7 AA3 7 ILE B 149 PRO B 150 -1 N ILE B 149 O PHE B 160 SHEET 1 AA4 4 THR B 4 ILE B 7 0 SHEET 2 AA4 4 ARG B 44 CYS B 49 -1 O ILE B 47 N GLU B 6 SHEET 3 AA4 4 GLY B 59 ARG B 70 -1 O GLY B 59 N LEU B 48 SHEET 4 AA4 4 VAL D 53 ASN D 56 1 O ILE D 54 N GLU B 69 SITE 1 AC1 5 GLY A 105 GLY A 107 ALA A 108 PHE A 142 SITE 2 AC1 5 GOL A 202 SITE 1 AC2 3 CL A 201 HOH A 326 HOH A 331 SITE 1 AC3 5 ARG A 36 GLN A 37 ASN A 40 ILE A 42 SITE 2 AC3 5 HOH A 301 SITE 1 AC4 7 THR A 62 LEU A 63 CYS A 64 THR A 91 SITE 2 AC4 7 GLY A 93 HOH A 307 HIS C 50 SITE 1 AC5 5 ALA A 121 HOH A 312 HOH A 330 ALA B 121 SITE 2 AC5 5 HOH B 329 SITE 1 AC6 3 ASN A 40 ARG B 99 GLN B 102 SITE 1 AC7 5 ILE B 127 HIS B 128 THR B 163 LYS B 164 SITE 2 AC7 5 HOH B 333 SITE 1 AC8 5 ASP A 13 GLY B 103 GLY B 105 GLY B 107 SITE 2 AC8 5 HOH B 323 SITE 1 AC9 2 HIS B 128 HOH B 312 SITE 1 AD1 4 ASN B 116 SER B 120 PHE B 170 HOH B 317 SITE 1 AD2 2 HIS B 33 ARG B 36 SITE 1 AD3 9 LEU B 43 THR B 62 LEU B 63 CYS B 64 SITE 2 AD3 9 THR B 91 GLY B 93 ARG B 94 HOH B 331 SITE 3 AD3 9 ARG D 52 SITE 1 AD4 5 ARG B 94 HOH B 311 HOH B 321 ARG D 51 SITE 2 AD4 5 ARG D 52 SITE 1 AD5 2 ARG B 36 ILE B 42 CRYST1 87.580 87.580 125.480 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011418 0.006592 0.000000 0.00000 SCALE2 0.000000 0.013185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007969 0.00000