HEADER TRANSPORT PROTEIN 20-JUN-18 6GV1 TITLE CRYSTAL STRUCTURE OF E.COLI MULTIDRUG/H+ ANTIPORTER MDFA IN OUTWARD TITLE 2 OPEN CONFORMATION WITH BOUND FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR FACILITATOR SUPERFAMILY MULTIDRUG/H+ ANTIPORTER MDFA COMPND 3 FROM E.COLI; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB FRAGMENT YN1074 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FAB FRAGMENT YN1074 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: C43 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PWALDO-GFPE; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS MAJOR FACILITATOR SUPERFAMILY, MULTIDRUG RESISTANCE, PROTON KEYWDS 2 TRANSPORT, MFS TRANSPORTER, DRUG PROTON ANTIPORTER, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.NAGARATHINAM,C.PARTHIER,M.T.STUBBS,M.TANABE REVDAT 3 17-JAN-24 6GV1 1 COMPND REVDAT 2 10-OCT-18 6GV1 1 COMPND JRNL REVDAT 1 03-OCT-18 6GV1 0 JRNL AUTH K.NAGARATHINAM,Y.NAKADA-NAKURA,C.PARTHIER,T.TERADA,N.JUGE, JRNL AUTH 2 F.JAENECKE,K.LIU,Y.HOTTA,T.MIYAJI,H.OMOTE,S.IWATA,N.NOMURA, JRNL AUTH 3 M.T.STUBBS,M.TANABE JRNL TITL OUTWARD OPEN CONFORMATION OF A MAJOR FACILITATOR SUPERFAMILY JRNL TITL 2 MULTIDRUG/H+ANTIPORTER PROVIDES INSIGHTS INTO SWITCHING JRNL TITL 3 MECHANISM. JRNL REF NAT COMMUN V. 9 4005 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30275448 JRNL DOI 10.1038/S41467-018-06306-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.NAGARATHINAM,F.JAENECKE,Y.NAKADA-NAKURA,Y.HOTTA,K.LIU, REMARK 1 AUTH 2 S.IWATA,M.T.STUBBS,N.NOMURA,M.TANABE REMARK 1 TITL THE MULTIDRUG-RESISTANCE TRANSPORTER MDFA FROM ESCHERICHIA REMARK 1 TITL 2 COLI: CRYSTALLIZATION AND X-RAY DIFFRACTION ANALYSIS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 73 423 2017 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 28695852 REMARK 1 DOI 10.1107/S2053230X17008500 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0527 - 6.7957 1.00 2977 157 0.2402 0.2583 REMARK 3 2 6.7957 - 5.3961 1.00 2701 140 0.2497 0.3082 REMARK 3 3 5.3961 - 4.7146 1.00 2635 142 0.2347 0.2527 REMARK 3 4 4.7146 - 4.2839 1.00 2594 133 0.2323 0.2633 REMARK 3 5 4.2839 - 3.9770 1.00 2582 137 0.2692 0.2731 REMARK 3 6 3.9770 - 3.7426 1.00 2538 135 0.2975 0.3221 REMARK 3 7 3.7426 - 3.5552 1.00 2568 132 0.3127 0.3697 REMARK 3 8 3.5552 - 3.4005 1.00 2509 136 0.3566 0.3758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 109.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6283 REMARK 3 ANGLE : 0.596 8551 REMARK 3 CHIRALITY : 0.040 994 REMARK 3 PLANARITY : 0.004 1059 REMARK 3 DIHEDRAL : 11.123 3698 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8259 88.0966 -0.1866 REMARK 3 T TENSOR REMARK 3 T11: 1.3099 T22: 0.9433 REMARK 3 T33: 0.5269 T12: 0.0238 REMARK 3 T13: -0.0450 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.7532 L22: 1.9133 REMARK 3 L33: 0.0381 L12: -0.1270 REMARK 3 L13: -0.2292 L23: -0.1047 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: 0.3410 S13: -0.0635 REMARK 3 S21: -0.1958 S22: -0.0118 S23: 0.0719 REMARK 3 S31: -0.0562 S32: 0.0899 S33: -0.0054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5211 68.7993 16.2221 REMARK 3 T TENSOR REMARK 3 T11: 1.5147 T22: 1.0539 REMARK 3 T33: 0.5988 T12: -0.0275 REMARK 3 T13: -0.1256 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.7878 L22: 3.3501 REMARK 3 L33: 2.3033 L12: 1.0151 REMARK 3 L13: 0.4037 L23: 1.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.1868 S12: -0.3714 S13: -0.0131 REMARK 3 S21: 1.2001 S22: -0.1311 S23: -0.2245 REMARK 3 S31: 0.1939 S32: -0.0242 S33: -0.2125 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5383 76.9829 -0.2051 REMARK 3 T TENSOR REMARK 3 T11: 1.2265 T22: 0.8996 REMARK 3 T33: 0.5604 T12: -0.0355 REMARK 3 T13: 0.0173 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 2.6617 L22: 3.4591 REMARK 3 L33: 0.6872 L12: -0.9870 REMARK 3 L13: 0.1714 L23: -0.0392 REMARK 3 S TENSOR REMARK 3 S11: 0.2322 S12: 0.2199 S13: 0.2008 REMARK 3 S21: -0.3482 S22: -0.0381 S23: 0.0258 REMARK 3 S31: 0.1312 S32: -0.1958 S33: -0.0260 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 4 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2573 84.0642 38.5783 REMARK 3 T TENSOR REMARK 3 T11: 1.6088 T22: 1.4412 REMARK 3 T33: 0.6940 T12: 0.0436 REMARK 3 T13: -0.1053 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 4.5882 L22: 2.8019 REMARK 3 L33: 2.9640 L12: -1.3001 REMARK 3 L13: 0.0489 L23: 0.1617 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.8066 S13: 0.4696 REMARK 3 S21: 0.1309 S22: 0.1637 S23: 0.1695 REMARK 3 S31: -0.2122 S32: -0.1205 S33: -0.0892 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 111 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0999 85.8280 60.2634 REMARK 3 T TENSOR REMARK 3 T11: 2.3270 T22: 2.4406 REMARK 3 T33: 0.7314 T12: -0.2258 REMARK 3 T13: 0.0233 T23: 0.1615 REMARK 3 L TENSOR REMARK 3 L11: 0.0974 L22: 0.1412 REMARK 3 L33: 3.3175 L12: 0.1167 REMARK 3 L13: 0.5663 L23: 0.6824 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.8117 S13: 0.0963 REMARK 3 S21: 0.8101 S22: 0.0423 S23: 0.1653 REMARK 3 S31: -0.2595 S32: -0.1674 S33: -0.2751 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 124 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1362 79.8444 73.9501 REMARK 3 T TENSOR REMARK 3 T11: 2.3054 T22: 2.5767 REMARK 3 T33: 0.9389 T12: 0.1669 REMARK 3 T13: -0.0905 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 0.7424 L22: 3.4150 REMARK 3 L33: 0.8440 L12: -0.9863 REMARK 3 L13: -0.5249 L23: 1.5756 REMARK 3 S TENSOR REMARK 3 S11: 0.3927 S12: -0.1064 S13: 0.3321 REMARK 3 S21: -0.4552 S22: -0.0081 S23: -0.3179 REMARK 3 S31: -0.4528 S32: -0.2354 S33: -0.2329 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9438 68.6852 36.9226 REMARK 3 T TENSOR REMARK 3 T11: 1.6143 T22: 1.4303 REMARK 3 T33: 0.9381 T12: 0.1151 REMARK 3 T13: -0.0811 T23: 0.1498 REMARK 3 L TENSOR REMARK 3 L11: 3.4181 L22: 2.9908 REMARK 3 L33: 1.1210 L12: -1.4734 REMARK 3 L13: -1.6574 L23: 1.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: -0.8898 S13: -0.5365 REMARK 3 S21: -0.0347 S22: 0.1018 S23: 0.4661 REMARK 3 S31: 0.5664 S32: 0.1740 S33: -0.0455 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 103 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1131 63.8927 56.5492 REMARK 3 T TENSOR REMARK 3 T11: 1.9873 T22: 1.9307 REMARK 3 T33: 0.6732 T12: 0.1620 REMARK 3 T13: -0.2711 T23: 0.3455 REMARK 3 L TENSOR REMARK 3 L11: 0.3604 L22: 0.5103 REMARK 3 L33: 0.5694 L12: -0.4300 REMARK 3 L13: 0.4536 L23: -0.5380 REMARK 3 S TENSOR REMARK 3 S11: 0.2354 S12: -0.4970 S13: -0.3458 REMARK 3 S21: 0.5447 S22: -0.1939 S23: -0.1631 REMARK 3 S31: -0.0515 S32: 0.2448 S33: -0.2338 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8481 63.7589 72.9327 REMARK 3 T TENSOR REMARK 3 T11: 2.1057 T22: 2.5902 REMARK 3 T33: 0.9214 T12: -0.2236 REMARK 3 T13: -0.0958 T23: 0.1739 REMARK 3 L TENSOR REMARK 3 L11: 1.8582 L22: 3.9133 REMARK 3 L33: 0.0307 L12: -1.6145 REMARK 3 L13: -0.0794 L23: -0.2167 REMARK 3 S TENSOR REMARK 3 S11: -0.3406 S12: 0.0287 S13: 0.2144 REMARK 3 S21: 0.4295 S22: 0.0157 S23: 0.0704 REMARK 3 S31: 0.2898 S32: 0.1044 S33: 0.0944 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22224 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.048 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.25400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 16.04 REMARK 200 R MERGE FOR SHELL (I) : 1.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZP0, 1IBG REMARK 200 REMARK 200 REMARK: HEXAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM ADA PH 6.5 100 MM NACL 100 MM REMARK 280 LI2SO4 32-36% PEG 300 8.8 MAG, PH 6.4, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 309.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 618.61333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 463.96000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 773.26667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 154.65333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 309.30667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 618.61333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 773.26667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 463.96000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 154.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 401 REMARK 465 LYS A 402 REMARK 465 GLN A 403 REMARK 465 MET A 404 REMARK 465 GLY A 405 REMARK 465 ASN A 406 REMARK 465 SER A 407 REMARK 465 HIS A 408 REMARK 465 GLU A 409 REMARK 465 GLY A 410 REMARK 465 GLU H 1 REMARK 465 VAL H 2 REMARK 465 GLN H 3 REMARK 465 GLY H 131 REMARK 465 CYS H 132 REMARK 465 GLY H 133 REMARK 465 ASP H 134 REMARK 465 THR H 135 REMARK 465 SER H 217 REMARK 465 GLY H 218 REMARK 465 PRO H 219 REMARK 465 ILE H 220 REMARK 465 SER H 221 REMARK 465 THR H 222 REMARK 465 ILE H 223 REMARK 465 ASN H 224 REMARK 465 PRO H 225 REMARK 465 CYS H 226 REMARK 465 PRO H 227 REMARK 465 PRO H 228 REMARK 465 CYS H 229 REMARK 465 LYS H 230 REMARK 465 GLU H 231 REMARK 465 CYS H 232 REMARK 465 HIS H 233 REMARK 465 LYS H 234 REMARK 465 CYS H 235 REMARK 465 PRO H 236 REMARK 465 ASN L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 45.97 -90.05 REMARK 500 LEU A 16 40.60 -94.02 REMARK 500 PHE A 67 -71.91 -90.10 REMARK 500 ARG A 198 30.02 -94.11 REMARK 500 LYS H 64 90.98 -63.76 REMARK 500 SER H 65 -33.30 179.68 REMARK 500 SER H 84 78.69 53.89 REMARK 500 TYR H 101 60.21 -116.61 REMARK 500 SER H 116 -156.19 -159.39 REMARK 500 ALA H 117 -35.42 -139.40 REMARK 500 THR H 120 60.76 32.20 REMARK 500 CYS H 144 98.00 -160.17 REMARK 500 GLU H 152 74.09 -68.53 REMARK 500 SER H 153 103.05 -164.65 REMARK 500 SER H 166 65.97 -114.96 REMARK 500 LEU H 178 164.15 63.09 REMARK 500 THR L 51 -60.47 64.21 REMARK 500 LYS L 107 -162.80 52.15 REMARK 500 ASN L 138 83.71 55.70 REMARK 500 ASP L 151 -140.37 -154.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 DBREF 6GV1 A 1 410 UNP P0AEY8 MDFA_ECOLI 1 410 DBREF 6GV1 H 1 236 PDB 6GV1 6GV1 1 236 DBREF 6GV1 L 1 214 PDB 6GV1 6GV1 1 214 SEQRES 1 A 410 MET GLN ASN LYS LEU ALA SER GLY ALA ARG LEU GLY ARG SEQRES 2 A 410 GLN ALA LEU LEU PHE PRO LEU CYS LEU VAL LEU TYR GLU SEQRES 3 A 410 PHE SER THR TYR ILE GLY ASN ASP MET ILE GLN PRO GLY SEQRES 4 A 410 MET LEU ALA VAL VAL GLU GLN TYR GLN ALA GLY ILE ASP SEQRES 5 A 410 TRP VAL PRO THR SER MET THR ALA TYR LEU ALA GLY GLY SEQRES 6 A 410 MET PHE LEU GLN TRP LEU LEU GLY PRO LEU SER ASP ARG SEQRES 7 A 410 ILE GLY ARG ARG PRO VAL MET LEU ALA GLY VAL VAL TRP SEQRES 8 A 410 PHE ILE VAL THR CYS LEU ALA ILE LEU LEU ALA GLN ASN SEQRES 9 A 410 ILE GLU GLN PHE THR LEU LEU ARG PHE LEU GLN GLY ILE SEQRES 10 A 410 SER LEU CYS PHE ILE GLY ALA VAL GLY TYR ALA ALA ILE SEQRES 11 A 410 GLN GLU SER PHE GLU GLU ALA VAL CYS ILE LYS ILE THR SEQRES 12 A 410 ALA LEU MET ALA ASN VAL ALA LEU ILE ALA PRO LEU LEU SEQRES 13 A 410 GLY PRO LEU VAL GLY ALA ALA TRP ILE HIS VAL LEU PRO SEQRES 14 A 410 TRP GLU GLY MET PHE VAL LEU PHE ALA ALA LEU ALA ALA SEQRES 15 A 410 ILE SER PHE PHE GLY LEU GLN ARG ALA MET PRO GLU THR SEQRES 16 A 410 ALA THR ARG ILE GLY GLU LYS LEU SER LEU LYS GLU LEU SEQRES 17 A 410 GLY ARG ASP TYR LYS LEU VAL LEU LYS ASN GLY ARG PHE SEQRES 18 A 410 VAL ALA GLY ALA LEU ALA LEU GLY PHE VAL SER LEU PRO SEQRES 19 A 410 LEU LEU ALA TRP ILE ALA GLN SER PRO ILE ILE ILE ILE SEQRES 20 A 410 THR GLY GLU GLN LEU SER SER TYR GLU TYR GLY LEU LEU SEQRES 21 A 410 GLN VAL PRO ILE PHE GLY ALA LEU ILE ALA GLY ASN LEU SEQRES 22 A 410 LEU LEU ALA ARG LEU THR SER ARG ARG THR VAL ARG SER SEQRES 23 A 410 LEU ILE ILE MET GLY GLY TRP PRO ILE MET ILE GLY LEU SEQRES 24 A 410 LEU VAL ALA ALA ALA ALA THR VAL ILE SER SER HIS ALA SEQRES 25 A 410 TYR LEU TRP MET THR ALA GLY LEU SER ILE TYR ALA PHE SEQRES 26 A 410 GLY ILE GLY LEU ALA ASN ALA GLY LEU VAL ARG LEU THR SEQRES 27 A 410 LEU PHE ALA SER ASP MET SER LYS GLY THR VAL SER ALA SEQRES 28 A 410 ALA MET GLY MET LEU GLN MET LEU ILE PHE THR VAL GLY SEQRES 29 A 410 ILE GLU ILE SER LYS HIS ALA TRP LEU ASN GLY GLY ASN SEQRES 30 A 410 GLY LEU PHE ASN LEU PHE ASN LEU VAL ASN GLY ILE LEU SEQRES 31 A 410 TRP LEU SER LEU MET VAL ILE PHE LEU LYS ASP LYS GLN SEQRES 32 A 410 MET GLY ASN SER HIS GLU GLY SEQRES 1 H 236 GLU VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 236 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 236 PHE SER PHE SER ILE TYR GLY LEU HIS TRP VAL ARG GLN SEQRES 4 H 236 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY MET ILE TRP SEQRES 5 H 236 GLY GLY GLY ARG THR ASP TYR ASN SER ALA LEU LYS SER SEQRES 6 H 236 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 236 PHE LEU LYS MET LYS SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 236 MET TYR TYR CYS ALA ARG ASN SER GLY TYR GLY ASN LEU SEQRES 9 H 236 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA SEQRES 10 H 236 ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 236 GLY CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 236 CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL THR VAL SEQRES 13 H 236 THR TRP ASN SER GLY SER LEU SER SER SER VAL HIS THR SEQRES 14 H 236 PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR MET SER SEQRES 15 H 236 SER SER VAL THR VAL PRO SER SER THR TRP PRO SER GLN SEQRES 16 H 236 THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 236 THR VAL ASP LYS LYS LEU GLU PRO SER GLY PRO ILE SER SEQRES 18 H 236 THR ILE ASN PRO CYS PRO PRO CYS LYS GLU CYS HIS LYS SEQRES 19 H 236 CYS PRO SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER LEU GLY GLU ARG VAL SER LEU THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE GLY TYR SER LEU ASN TRP LEU GLN GLN GLU SEQRES 4 L 214 PRO ASP GLY THR ILE LYS ARG LEU ILE TYR ALA THR SER SEQRES 5 L 214 ASN LEU ASP SER GLY VAL PRO LYS ARG PHE SER GLY SER SEQRES 6 L 214 ARG SER GLY SER ASP TYR SER LEU THR ILE SER SER LEU SEQRES 7 L 214 GLU SER GLU ASP PHE VAL ASP TYR TYR CYS LEU GLN TYR SEQRES 8 L 214 ALA SER SER PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS HET SO4 A 501 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 O4 S 2- HELIX 1 AA1 LEU A 16 MET A 35 1 20 HELIX 2 AA2 ILE A 36 PRO A 38 5 3 HELIX 3 AA3 GLY A 39 TYR A 47 1 9 HELIX 4 AA4 GLY A 50 VAL A 54 5 5 HELIX 5 AA5 PRO A 55 MET A 66 1 12 HELIX 6 AA6 LEU A 68 GLY A 80 1 13 HELIX 7 AA7 GLY A 80 ILE A 99 1 20 HELIX 8 AA8 LEU A 100 ALA A 102 5 3 HELIX 9 AA9 ASN A 104 ILE A 117 1 14 HELIX 10 AB1 LEU A 119 VAL A 125 1 7 HELIX 11 AB2 VAL A 125 PHE A 134 1 10 HELIX 12 AB3 GLU A 135 LEU A 168 1 34 HELIX 13 AB4 GLU A 171 MET A 192 1 22 HELIX 14 AB5 SER A 204 ASN A 218 1 15 HELIX 15 AB6 ASN A 218 GLN A 251 1 34 HELIX 16 AB7 SER A 253 THR A 279 1 27 HELIX 17 AB8 THR A 283 SER A 309 1 27 HELIX 18 AB9 ALA A 312 ALA A 341 1 30 HELIX 19 AC1 SER A 345 ASN A 374 1 30 HELIX 20 AC2 GLY A 376 LYS A 400 1 25 HELIX 21 AC3 GLN H 86 THR H 90 5 5 HELIX 22 AC4 SER H 160 SER H 162 5 3 HELIX 23 AC5 GLU L 79 PHE L 83 5 5 HELIX 24 AC6 GLU L 123 SER L 127 5 5 HELIX 25 AC7 LYS L 183 ARG L 188 1 6 SHEET 1 AA1 4 LYS H 5 SER H 7 0 SHEET 2 AA1 4 LEU H 18 THR H 23 -1 O THR H 23 N LYS H 5 SHEET 3 AA1 4 GLN H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 AA1 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA2 6 ALA H 91 SER H 99 -1 N TYR H 93 O THR H 111 SHEET 4 AA2 6 LEU H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASP H 58 N MET H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA3 4 ALA H 91 SER H 99 -1 N TYR H 93 O THR H 111 SHEET 4 AA3 4 GLY H 102 TYR H 106 -1 O GLY H 102 N SER H 99 SHEET 1 AA4 4 SER H 124 LEU H 128 0 SHEET 2 AA4 4 SER H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AA4 4 TYR H 179 PRO H 188 -1 O VAL H 185 N LEU H 142 SHEET 4 AA4 4 VAL H 167 PHE H 170 -1 N PHE H 170 O SER H 182 SHEET 1 AA5 3 THR H 155 TRP H 158 0 SHEET 2 AA5 3 THR H 198 HIS H 203 -1 O SER H 200 N THR H 157 SHEET 3 AA5 3 THR H 208 LYS H 213 -1 O VAL H 210 N VAL H 201 SHEET 1 AA6 4 MET L 4 SER L 7 0 SHEET 2 AA6 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA6 4 ASP L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 AA6 4 PHE L 62 SER L 67 -1 N SER L 67 O ASP L 70 SHEET 1 AA7 6 SER L 10 ALA L 13 0 SHEET 2 AA7 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA7 6 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N LEU L 36 O TYR L 87 SHEET 5 AA7 6 ILE L 44 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA7 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA8 4 SER L 10 ALA L 13 0 SHEET 2 AA8 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 4 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 THR L 114 PHE L 118 0 SHEET 2 AA9 4 GLY L 129 ASN L 137 -1 O ASN L 137 N THR L 114 SHEET 3 AA9 4 SER L 174 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA9 4 VAL L 159 LEU L 160 -1 N LEU L 160 O THR L 178 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 GLY L 129 ASN L 137 -1 O ASN L 137 N THR L 114 SHEET 3 AB1 4 SER L 174 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB1 4 TRP L 163 THR L 164 -1 N THR L 164 O SER L 174 SHEET 1 AB2 3 ASN L 145 LYS L 149 0 SHEET 2 AB2 3 SER L 191 HIS L 198 -1 O THR L 197 N ASN L 145 SHEET 3 AB2 3 SER L 201 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 2 CYS H 144 CYS H 199 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 TRP H 192 PRO H 193 0 4.27 CISPEP 2 SER L 7 PRO L 8 0 -6.35 CISPEP 3 SER L 94 PRO L 95 0 2.51 CISPEP 4 TYR L 140 PRO L 141 0 9.49 SITE 1 AC1 2 ARG A 281 ARG A 282 CRYST1 73.258 73.258 927.920 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013650 0.007881 0.000000 0.00000 SCALE2 0.000000 0.015762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001078 0.00000