HEADER HYDROLASE 20-JUN-18 6GV2 TITLE SULFOLOBUS SOLFATARICUS 2-KETO-3-DEOXYGLUCONATE ALDOLASE Y103F,Y130F, TITLE 2 A198F VARIANT IN COMPLEX WITH L-2-KETO, 3-DEOXY-GALACTONATE CAVEAT 6GV2 SSH A 301 HAS WRONG CHIRALITY AT ATOM C5 SSH B 301 HAS WRONG CAVEAT 2 6GV2 CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE/2-DEHYDRO-3-DEOXY-6- COMPND 3 PHOSPHOGALACTONATE ALDOLASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 4.1.2.55; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS 2-KETO-3-DEOXYGALACTONATE, ALDOLASE, SULFOLOBUS SOLFATARICUS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.CRENNELL,M.J.DANSON,S.ROYER REVDAT 3 17-JAN-24 6GV2 1 REMARK REVDAT 2 29-NOV-23 6GV2 1 CAVEAT COMPND SOURCE REMARK REVDAT 2 2 1 HETSYN LINK ATOM REVDAT 1 03-JUL-19 6GV2 0 JRNL AUTH S.J.CRENNELL,M.J.DANSON,S.ROYER JRNL TITL SULFOLOBUS SOLFATARICUS 2-KETO-3-DEOXYGLUCONATE ALDOLASE JRNL TITL 2 Y132V,T157C VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1002 - 5.3990 1.00 2828 171 0.1670 0.2000 REMARK 3 2 5.3990 - 4.2867 1.00 2647 154 0.1266 0.1598 REMARK 3 3 4.2867 - 3.7452 1.00 2648 132 0.1306 0.1677 REMARK 3 4 3.7452 - 3.4029 1.00 2618 130 0.1519 0.2060 REMARK 3 5 3.4029 - 3.1591 1.00 2573 145 0.1641 0.2254 REMARK 3 6 3.1591 - 2.9729 1.00 2563 150 0.1776 0.2263 REMARK 3 7 2.9729 - 2.8240 1.00 2570 123 0.1788 0.2279 REMARK 3 8 2.8240 - 2.7011 1.00 2552 147 0.1749 0.2228 REMARK 3 9 2.7011 - 2.5972 1.00 2533 149 0.1718 0.2313 REMARK 3 10 2.5972 - 2.5076 1.00 2528 152 0.1733 0.2401 REMARK 3 11 2.5076 - 2.4292 1.00 2534 135 0.1899 0.2731 REMARK 3 12 2.4292 - 2.3597 1.00 2511 136 0.1915 0.2580 REMARK 3 13 2.3597 - 2.2976 1.00 2561 120 0.1920 0.2433 REMARK 3 14 2.2976 - 2.2416 1.00 2540 127 0.2063 0.3106 REMARK 3 15 2.2416 - 2.1906 1.00 2535 129 0.2019 0.2471 REMARK 3 16 2.1906 - 2.1440 1.00 2538 119 0.2060 0.2394 REMARK 3 17 2.1440 - 2.1011 1.00 2519 127 0.2125 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4969 REMARK 3 ANGLE : 0.873 6710 REMARK 3 CHIRALITY : 0.049 757 REMARK 3 PLANARITY : 0.006 851 REMARK 3 DIHEDRAL : 12.261 3025 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1W37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 6.8, 13% PEG 4000, 8% REMARK 280 ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 163.70067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.85033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.77550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.92517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 204.62583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 163.70067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.85033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.92517 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 122.77550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 204.62583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 51.73900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.61458 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -40.92517 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 44 O2 KPI A 155 1.54 REMARK 500 HD22 ASN B 173 O HOH B 405 1.58 REMARK 500 HH11 ARG B 83 O HOH B 403 1.59 REMARK 500 O HOH A 436 O HOH A 488 2.09 REMARK 500 OE1 GLU B 221 O HOH B 401 2.09 REMARK 500 O HOH B 523 O HOH B 527 2.14 REMARK 500 O HOH A 555 O HOH A 578 2.17 REMARK 500 O HOH A 494 O HOH A 558 2.19 REMARK 500 OD2 ASP B 15 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH B 531 12544 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 33.84 76.74 REMARK 500 ASN A 16 32.90 76.74 REMARK 500 PHE A 103 -66.65 75.87 REMARK 500 ILE A 158 142.25 -170.87 REMARK 500 PHE B 103 -63.95 66.38 REMARK 500 ASN B 160 96.26 -174.61 REMARK 500 LYS B 218 65.04 -103.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 575 DISTANCE = 5.90 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SSH A 301 REMARK 610 SSH B 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GXV A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SSH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GXV B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VAL B 154 and KPI B REMARK 800 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide KPI B 155 and ASP B REMARK 800 156 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YDA RELATED DB: PDB REMARK 900 2YDA CONTAINS THE SAME PROTEIN WITHOUT LIGANDS DBREF 6GV2 A 1 294 UNP O54288 KDGA_SULSF 1 294 DBREF 6GV2 B 1 294 UNP O54288 KDGA_SULSF 1 294 SEQADV 6GV2 PHE A 103 UNP O54288 TYR 103 ENGINEERED MUTATION SEQADV 6GV2 PHE A 130 UNP O54288 TYR 130 ENGINEERED MUTATION SEQADV 6GV2 PHE A 198 UNP O54288 ALA 198 ENGINEERED MUTATION SEQADV 6GV2 PHE B 103 UNP O54288 TYR 103 ENGINEERED MUTATION SEQADV 6GV2 PHE B 130 UNP O54288 TYR 130 ENGINEERED MUTATION SEQADV 6GV2 PHE B 198 UNP O54288 ALA 198 ENGINEERED MUTATION SEQRES 1 A 294 MET PRO GLU ILE ILE THR PRO ILE ILE THR PRO PHE THR SEQRES 2 A 294 LYS ASP ASN ARG ILE ASP LYS GLU LYS LEU LYS ILE HIS SEQRES 3 A 294 ALA GLU ASN LEU ILE ARG LYS GLY ILE ASP LYS LEU PHE SEQRES 4 A 294 VAL ASN GLY THR THR GLY LEU GLY PRO SER LEU SER PRO SEQRES 5 A 294 GLU GLU LYS LEU GLU ASN LEU LYS ALA VAL TYR ASP VAL SEQRES 6 A 294 THR ASN LYS ILE ILE PHE GLN VAL GLY GLY LEU ASN LEU SEQRES 7 A 294 ASP ASP ALA ILE ARG LEU ALA LYS LEU SER LYS ASP PHE SEQRES 8 A 294 ASP ILE VAL GLY ILE ALA SER TYR ALA PRO TYR PHE TYR SEQRES 9 A 294 PRO ARG MET SER GLU LYS HIS LEU VAL LYS TYR PHE LYS SEQRES 10 A 294 THR LEU CYS GLU VAL SER PRO HIS PRO VAL TYR LEU PHE SEQRES 11 A 294 ASN TYR PRO THR ALA THR GLY LYS ASP ILE ASP ALA LYS SEQRES 12 A 294 VAL ALA LYS GLU ILE GLY CYS PHE THR GLY VAL LYS ASP SEQRES 13 A 294 THR ILE GLU ASN ILE ILE HIS THR LEU ASP TYR LYS ARG SEQRES 14 A 294 LEU ASN PRO ASN MET LEU VAL TYR SER GLY SER ASP MET SEQRES 15 A 294 LEU ILE ALA THR VAL ALA SER THR GLY LEU ASP GLY ASN SEQRES 16 A 294 VAL ALA PHE GLY SER ASN TYR LEU PRO GLU VAL THR VAL SEQRES 17 A 294 THR ILE LYS LYS LEU ALA MET GLU ARG LYS ILE ASP GLU SEQRES 18 A 294 ALA LEU LYS LEU GLN PHE LEU HIS ASP GLU VAL ILE GLU SEQRES 19 A 294 ALA SER ARG ILE PHE GLY SER LEU SER SER ASN TYR VAL SEQRES 20 A 294 LEU THR LYS TYR PHE GLN GLY TYR ASP LEU GLY TYR PRO SEQRES 21 A 294 ARG PRO PRO ILE PHE PRO LEU ASP ASP GLU GLU GLU ARG SEQRES 22 A 294 GLN LEU ILE LYS LYS VAL GLU GLY ILE ARG ALA LYS LEU SEQRES 23 A 294 VAL GLU LEU LYS ILE LEU LYS GLU SEQRES 1 B 294 MET PRO GLU ILE ILE THR PRO ILE ILE THR PRO PHE THR SEQRES 2 B 294 LYS ASP ASN ARG ILE ASP LYS GLU LYS LEU LYS ILE HIS SEQRES 3 B 294 ALA GLU ASN LEU ILE ARG LYS GLY ILE ASP LYS LEU PHE SEQRES 4 B 294 VAL ASN GLY THR THR GLY LEU GLY PRO SER LEU SER PRO SEQRES 5 B 294 GLU GLU LYS LEU GLU ASN LEU LYS ALA VAL TYR ASP VAL SEQRES 6 B 294 THR ASN LYS ILE ILE PHE GLN VAL GLY GLY LEU ASN LEU SEQRES 7 B 294 ASP ASP ALA ILE ARG LEU ALA LYS LEU SER LYS ASP PHE SEQRES 8 B 294 ASP ILE VAL GLY ILE ALA SER TYR ALA PRO TYR PHE TYR SEQRES 9 B 294 PRO ARG MET SER GLU LYS HIS LEU VAL LYS TYR PHE LYS SEQRES 10 B 294 THR LEU CYS GLU VAL SER PRO HIS PRO VAL TYR LEU PHE SEQRES 11 B 294 ASN TYR PRO THR ALA THR GLY LYS ASP ILE ASP ALA LYS SEQRES 12 B 294 VAL ALA LYS GLU ILE GLY CYS PHE THR GLY VAL LYS ASP SEQRES 13 B 294 THR ILE GLU ASN ILE ILE HIS THR LEU ASP TYR LYS ARG SEQRES 14 B 294 LEU ASN PRO ASN MET LEU VAL TYR SER GLY SER ASP MET SEQRES 15 B 294 LEU ILE ALA THR VAL ALA SER THR GLY LEU ASP GLY ASN SEQRES 16 B 294 VAL ALA PHE GLY SER ASN TYR LEU PRO GLU VAL THR VAL SEQRES 17 B 294 THR ILE LYS LYS LEU ALA MET GLU ARG LYS ILE ASP GLU SEQRES 18 B 294 ALA LEU LYS LEU GLN PHE LEU HIS ASP GLU VAL ILE GLU SEQRES 19 B 294 ALA SER ARG ILE PHE GLY SER LEU SER SER ASN TYR VAL SEQRES 20 B 294 LEU THR LYS TYR PHE GLN GLY TYR ASP LEU GLY TYR PRO SEQRES 21 B 294 ARG PRO PRO ILE PHE PRO LEU ASP ASP GLU GLU GLU ARG SEQRES 22 B 294 GLN LEU ILE LYS LYS VAL GLU GLY ILE ARG ALA LYS LEU SEQRES 23 B 294 VAL GLU LEU LYS ILE LEU LYS GLU HET KPI A 155 27 HET KPI B 155 27 HET SSH A 301 20 HET GXV A 302 12 HET EDO A 303 10 HET GOL A 304 14 HET GOL A 305 12 HET GOL A 306 14 HET SSH B 301 20 HET GXV B 302 12 HET EDO B 303 10 HET GOL B 304 12 HET GOL B 305 14 HET GOL B 306 14 HET GOL B 307 13 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM SSH 3-DEOXY-D-ARABINO-HEXONIC ACID HETNAM GXV L-GLYCERALDEHYDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN SSH D-2-KETO-3-DEOXYGLUCONATE HETSYN GXV GLYCERALDEHYDE; (2S)-2,3-DIHYDROXYPROPANAL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KPI 2(C9 H16 N2 O4) FORMUL 3 SSH 2(C6 H12 O6) FORMUL 4 GXV 2(C3 H6 O3) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 16 HOH *361(H2 O) HELIX 1 AA1 ASP A 19 LYS A 33 1 15 HELIX 2 AA2 LEU A 46 LEU A 50 5 5 HELIX 3 AA3 SER A 51 ASP A 64 1 14 HELIX 4 AA4 ASN A 77 SER A 88 1 12 HELIX 5 AA5 LYS A 89 PHE A 91 5 3 HELIX 6 AA6 SER A 108 SER A 123 1 16 HELIX 7 AA7 TYR A 132 GLY A 137 1 6 HELIX 8 AA8 ASP A 141 GLY A 149 1 9 HELIX 9 AA9 ASN A 160 ASN A 171 1 12 HELIX 10 AB1 SER A 180 MET A 182 5 3 HELIX 11 AB2 LEU A 183 THR A 190 1 8 HELIX 12 AB3 PHE A 198 TYR A 202 5 5 HELIX 13 AB4 LEU A 203 GLU A 216 1 14 HELIX 14 AB5 LYS A 218 ILE A 238 1 21 HELIX 15 AB6 GLY A 240 GLY A 254 1 15 HELIX 16 AB7 ASP A 268 LEU A 289 1 22 HELIX 17 AB8 ASP B 19 LYS B 33 1 15 HELIX 18 AB9 LEU B 46 LEU B 50 5 5 HELIX 19 AC1 SER B 51 ASP B 64 1 14 HELIX 20 AC2 ASN B 77 SER B 88 1 12 HELIX 21 AC3 LYS B 89 PHE B 91 5 3 HELIX 22 AC4 SER B 108 SER B 123 1 16 HELIX 23 AC5 TYR B 132 GLY B 137 1 6 HELIX 24 AC6 ASP B 141 GLY B 149 1 9 HELIX 25 AC7 ASN B 160 ASN B 171 1 12 HELIX 26 AC8 SER B 180 MET B 182 5 3 HELIX 27 AC9 LEU B 183 THR B 190 1 8 HELIX 28 AD1 PHE B 198 TYR B 202 5 5 HELIX 29 AD2 LEU B 203 GLU B 216 1 14 HELIX 30 AD3 LYS B 218 ILE B 238 1 21 HELIX 31 AD4 GLY B 240 GLY B 254 1 15 HELIX 32 AD5 ASP B 268 LEU B 289 1 22 SHEET 1 AA1 9 GLU A 3 PRO A 7 0 SHEET 2 AA1 9 LYS A 37 VAL A 40 1 O PHE A 39 N THR A 6 SHEET 3 AA1 9 ILE A 69 GLN A 72 1 O ILE A 70 N VAL A 40 SHEET 4 AA1 9 GLY A 95 TYR A 99 1 O GLY A 95 N PHE A 71 SHEET 5 AA1 9 VAL A 127 ASN A 131 1 O TYR A 128 N ILE A 96 SHEET 6 AA1 9 PHE A 151 ASP A 156 1 O LYS A 155 N ASN A 131 SHEET 7 AA1 9 LEU A 175 SER A 178 1 O TYR A 177 N VAL A 154 SHEET 8 AA1 9 GLY A 194 VAL A 196 1 O VAL A 196 N SER A 178 SHEET 9 AA1 9 GLU A 3 PRO A 7 1 N ILE A 5 O ASN A 195 SHEET 1 AA2 9 GLU B 3 PRO B 7 0 SHEET 2 AA2 9 LYS B 37 VAL B 40 1 O PHE B 39 N THR B 6 SHEET 3 AA2 9 ILE B 69 GLN B 72 1 O ILE B 70 N VAL B 40 SHEET 4 AA2 9 GLY B 95 TYR B 99 1 O GLY B 95 N PHE B 71 SHEET 5 AA2 9 VAL B 127 ASN B 131 1 O TYR B 128 N ILE B 96 SHEET 6 AA2 9 PHE B 151 ASP B 156 1 O LYS B 155 N ASN B 131 SHEET 7 AA2 9 LEU B 175 SER B 178 1 O TYR B 177 N VAL B 154 SHEET 8 AA2 9 GLY B 194 VAL B 196 1 O VAL B 196 N SER B 178 SHEET 9 AA2 9 GLU B 3 PRO B 7 1 N ILE B 5 O ASN B 195 SSBOND 1 CYS A 120 CYS A 150 1555 1555 2.02 SSBOND 2 CYS B 120 CYS B 150 1555 1555 2.04 LINK C VAL A 154 N AKPI A 155 1555 1555 1.34 LINK C AKPI A 155 N ASP A 156 1555 1555 1.33 LINK O5 BSSH A 301 C1 BGXV A 302 1555 1555 1.42 LINK O6 BSSH A 301 C2 BGXV A 302 1555 1555 1.11 LINK C VAL B 154 N AKPI B 155 1555 1555 1.33 LINK C AKPI B 155 N ASP B 156 1555 1555 1.33 LINK O5 BSSH B 301 C1 BGXV B 302 1555 1555 1.13 LINK O6 BSSH B 301 C2 BGXV B 302 1555 1555 1.40 CISPEP 1 PRO A 262 PRO A 263 0 10.50 CISPEP 2 PRO B 262 PRO B 263 0 13.51 SITE 1 AC1 13 PRO A 7 PHE A 39 THR A 43 THR A 44 SITE 2 AC1 13 TYR A 99 PHE A 130 TYR A 132 LYS A 155 SITE 3 AC1 13 KPI A 155 THR A 157 GLY A 179 PHE A 198 SITE 4 AC1 13 GXV A 302 SITE 1 AC2 5 THR A 44 TYR A 132 PHE A 198 SER A 241 SITE 2 AC2 5 SSH A 301 SITE 1 AC3 4 LYS A 114 THR A 118 GLU A 121 HOH A 401 SITE 1 AC4 7 GLY A 240 SER A 241 LEU A 242 SER A 243 SITE 2 AC4 7 ARG B 106 SER B 108 HIS B 111 SITE 1 AC5 4 SER A 123 HIS A 125 HOH A 440 HOH A 450 SITE 1 AC6 3 GLU A 121 VAL A 122 SER A 123 SITE 1 AC7 13 PRO B 7 PHE B 39 GLY B 42 THR B 43 SITE 2 AC7 13 THR B 44 TYR B 99 PHE B 130 TYR B 132 SITE 3 AC7 13 LYS B 155 KPI B 155 THR B 157 PHE B 198 SITE 4 AC7 13 GXV B 302 SITE 1 AC8 6 TYR B 132 PHE B 198 SER B 241 LEU B 242 SITE 2 AC8 6 ASN B 245 SSH B 301 SITE 1 AC9 6 ARG A 106 HOH A 462 GLY B 240 SER B 241 SITE 2 AC9 6 LEU B 242 SER B 243 SITE 1 AD1 7 ASN B 171 PRO B 172 ASN B 173 MET B 174 SITE 2 AD1 7 GOL B 305 HOH B 414 HOH B 436 SITE 1 AD2 3 GLY B 149 THR B 152 GOL B 304 SITE 1 AD3 5 TYR B 63 ASP B 90 PHE B 91 GLU B 216 SITE 2 AD3 5 LYS B 218 SITE 1 AD4 7 CYS B 120 SER B 123 HIS B 125 PRO B 126 SITE 2 AD4 7 HOH B 432 HOH B 506 HOH B 512 SITE 1 AD5 17 PRO B 7 PHE B 39 THR B 44 TYR B 99 SITE 2 AD5 17 LEU B 129 PHE B 130 ASN B 131 GLY B 153 SITE 3 AD5 17 ASP B 156 THR B 157 MET B 174 LEU B 175 SITE 4 AD5 17 VAL B 176 TYR B 177 GLY B 179 VAL B 196 SITE 5 AD5 17 SSH B 301 SITE 1 AD6 19 PRO B 7 PHE B 39 THR B 44 TYR B 99 SITE 2 AD6 19 LEU B 129 PHE B 130 ASN B 131 VAL B 154 SITE 3 AD6 19 THR B 157 ILE B 158 HIS B 163 THR B 164 SITE 4 AD6 19 TYR B 167 TYR B 177 SER B 178 GLY B 179 SITE 5 AD6 19 VAL B 196 SSH B 301 HOH B 420 CRYST1 103.478 103.478 245.551 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009664 0.005579 0.000000 0.00000 SCALE2 0.000000 0.011159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004072 0.00000