HEADER CELL CYCLE 21-JUN-18 6GVM
TITLE TUBULIN:F3II DARPIN COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TUBULIN ALPHA CHAIN;
COMPND 3 CHAIN: A;
COMPND 4 MOL_ID: 2;
COMPND 5 MOLECULE: TUBULIN BETA CHAIN;
COMPND 6 CHAIN: B;
COMPND 7 MOL_ID: 3;
COMPND 8 MOLECULE: STATHMIN-LIKE DOMAIN R1;
COMPND 9 CHAIN: C;
COMPND 10 ENGINEERED: YES;
COMPND 11 MOL_ID: 4;
COMPND 12 MOLECULE: F3II DARPIN;
COMPND 13 CHAIN: D;
COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: OVIS ARIES;
SOURCE 3 ORGANISM_COMMON: SHEEP;
SOURCE 4 ORGANISM_TAXID: 9940;
SOURCE 5 MOL_ID: 2;
SOURCE 6 ORGANISM_SCIENTIFIC: OVIS ARIES;
SOURCE 7 ORGANISM_COMMON: SHEEP;
SOURCE 8 ORGANISM_TAXID: 9940;
SOURCE 9 MOL_ID: 3;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 12 ORGANISM_TAXID: 32630;
SOURCE 13 MOL_ID: 4;
SOURCE 14 SYNTHETIC: YES;
SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 16 ORGANISM_TAXID: 32630
KEYWDS MICROTUBULE, DARPIN, STATHMIN-LIKE PROTEIN, CELL CYCLE
EXPDTA X-RAY DIFFRACTION
AUTHOR B.GIGANT,V.CAMPANACCI,S.CANTOS FERNANDES
REVDAT 5 17-JAN-24 6GVM 1 REMARK
REVDAT 4 22-MAY-19 6GVM 1 JRNL
REVDAT 3 08-MAY-19 6GVM 1 JRNL
REVDAT 2 01-MAY-19 6GVM 1 JRNL
REVDAT 1 24-APR-19 6GVM 0
JRNL AUTH V.CAMPANACCI,A.URVOAS,S.CANTOS-FERNANDES,M.AUMONT-NICAISE,
JRNL AUTH 2 A.A.ARTENI,C.VELOURS,M.VALERIO-LEPINIEC,B.DREIER,
JRNL AUTH 3 A.PLUCKTHUN,A.PILON,C.POUS,P.MINARD,B.GIGANT
JRNL TITL INSIGHT INTO MICROTUBULE NUCLEATION FROM TUBULIN-CAPPING
JRNL TITL 2 PROTEINS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 9859 2019
JRNL REFN ESSN 1091-6490
JRNL PMID 31036638
JRNL DOI 10.1073/PNAS.1813559116
REMARK 2
REMARK 2 RESOLUTION. 3.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.28
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 50.0
REMARK 3 NUMBER OF REFLECTIONS : 7763
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.248
REMARK 3 R VALUE (WORKING SET) : 0.245
REMARK 3 FREE R VALUE : 0.270
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.510
REMARK 3 FREE R VALUE TEST SET COUNT : 738
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.91
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 17.72
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 771
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2476
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 698
REMARK 3 BIN R VALUE (WORKING SET) : 0.2439
REMARK 3 BIN FREE R VALUE : 0.2843
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.47
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 8335
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 61
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 46.67
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.48
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 7.40870
REMARK 3 B22 (A**2) : -14.52180
REMARK 3 B33 (A**2) : 7.11300
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 1.62350
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.650
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 1.204
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.745
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.716
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 8570 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 11637 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 2944 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 231 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 1272 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 8570 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 1129 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 9605 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 1.07
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.40
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* C|6 - C|62 }
REMARK 3 ORIGIN FOR THE GROUP (A): -9.5936 -27.7245 48.6187
REMARK 3 T TENSOR
REMARK 3 T11: 0.2137 T22: -0.3261
REMARK 3 T33: -0.0082 T12: -0.0313
REMARK 3 T13: 0.5081 T23: 0.0772
REMARK 3 L TENSOR
REMARK 3 L11: 1.8564 L22: 3.4609
REMARK 3 L33: 0.9414 L12: -1.4286
REMARK 3 L13: 0.8088 L23: 0.6127
REMARK 3 S TENSOR
REMARK 3 S11: 0.0613 S12: 0.0245 S13: -0.1256
REMARK 3 S21: 0.4972 S22: 0.1542 S23: 0.5179
REMARK 3 S31: -0.3028 S32: -0.4269 S33: -0.2155
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* C|63 - C|85 }
REMARK 3 ORIGIN FOR THE GROUP (A): 22.8632 -32.9643 22.7274
REMARK 3 T TENSOR
REMARK 3 T11: 0.1268 T22: -0.6839
REMARK 3 T33: -0.0897 T12: -0.1199
REMARK 3 T13: 0.4613 T23: 0.0517
REMARK 3 L TENSOR
REMARK 3 L11: 3.1928 L22: 2.8028
REMARK 3 L33: 3.6481 L12: -1.0896
REMARK 3 L13: 0.0591 L23: 0.5907
REMARK 3 S TENSOR
REMARK 3 S11: 0.2110 S12: -0.0537 S13: 0.0921
REMARK 3 S21: -0.2522 S22: 0.0828 S23: -0.1162
REMARK 3 S31: -0.3364 S32: 0.2767 S33: -0.2938
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { D|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 37.0287 -38.6272 -12.7517
REMARK 3 T TENSOR
REMARK 3 T11: -0.0087 T22: -0.4335
REMARK 3 T33: -0.2973 T12: -0.2278
REMARK 3 T13: -0.2766 T23: -0.2461
REMARK 3 L TENSOR
REMARK 3 L11: 1.7732 L22: 8.5380
REMARK 3 L33: 7.3220 L12: 5.9651
REMARK 3 L13: -1.7117 L23: 0.5224
REMARK 3 S TENSOR
REMARK 3 S11: -0.0324 S12: -0.3322 S13: -0.3236
REMARK 3 S21: -0.4793 S22: -0.0395 S23: 0.1055
REMARK 3 S31: 0.3006 S32: -0.9072 S33: 0.0719
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6GVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-18.
REMARK 100 THE DEPOSITION ID IS D_1200010617.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-SEP-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15398
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500
REMARK 200 RESOLUTION RANGE LOW (A) : 49.300
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0
REMARK 200 DATA REDUNDANCY : 3.400
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5EYP, 4F6R
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.68
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG5000MME, MES PH 6.0, 150 MM
REMARK 280 AMMONIUM SULFATE, 50 MM KCL, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.63350
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.86050
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.63350
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.86050
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 10120 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 39130 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 38
REMARK 465 ASP A 39
REMARK 465 LYS A 40
REMARK 465 THR A 41
REMARK 465 ILE A 42
REMARK 465 GLY A 43
REMARK 465 GLY A 44
REMARK 465 GLY A 45
REMARK 465 ASP A 46
REMARK 465 ASP A 438
REMARK 465 SER A 439
REMARK 465 VAL A 440
REMARK 465 GLU A 441
REMARK 465 GLY A 442
REMARK 465 GLU A 443
REMARK 465 GLY A 444
REMARK 465 GLU A 445
REMARK 465 GLU A 446
REMARK 465 GLU A 447
REMARK 465 GLY A 448
REMARK 465 GLU A 449
REMARK 465 GLU A 450
REMARK 465 TYR A 451
REMARK 465 GLY B 279
REMARK 465 SER B 280
REMARK 465 GLN B 281
REMARK 465 GLN B 282
REMARK 465 TYR B 283
REMARK 465 ARG B 284
REMARK 465 GLU B 442
REMARK 465 GLN B 443
REMARK 465 GLY B 444
REMARK 465 GLU B 445
REMARK 465 PHE B 446
REMARK 465 GLU B 447
REMARK 465 GLU B 448
REMARK 465 GLU B 449
REMARK 465 GLU B 450
REMARK 465 GLY B 451
REMARK 465 GLU B 452
REMARK 465 ASP B 453
REMARK 465 GLU B 454
REMARK 465 ALA B 455
REMARK 465 ALA C 4
REMARK 465 ASP C 5
REMARK 465 ASP C 30
REMARK 465 GLY C 31
REMARK 465 VAL C 32
REMARK 465 PRO C 33
REMARK 465 GLU C 34
REMARK 465 PHE C 35
REMARK 465 ASN C 36
REMARK 465 ALA C 37
REMARK 465 SER C 38
REMARK 465 LEU C 39
REMARK 465 PRO C 40
REMARK 465 ARG C 41
REMARK 465 ARG C 42
REMARK 465 ARG C 43
REMARK 465 ASP C 44
REMARK 465 LYS C 86
REMARK 465 GLU C 87
REMARK 465 LEU C 88
REMARK 465 LYS C 89
REMARK 465 GLU C 90
REMARK 465 MET D 1
REMARK 465 ARG D 2
REMARK 465 GLY D 3
REMARK 465 SER D 4
REMARK 465 HIS D 5
REMARK 465 HIS D 6
REMARK 465 HIS D 7
REMARK 465 HIS D 8
REMARK 465 HIS D 9
REMARK 465 HIS D 10
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 MET A 1 CG SD CE
REMARK 470 HIS A 88 CG ND1 CD2 CE1 NE2
REMARK 470 LYS A 163 CG CD CE NZ
REMARK 470 GLU A 220 CG CD OE1 OE2
REMARK 470 TYR A 262 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 TYR A 282 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 HIS A 309 CG ND1 CD2 CE1 NE2
REMARK 470 MET B 1 CG SD CE
REMARK 470 GLN B 96 CG CD OE1 NE2
REMARK 470 LYS C 25 CG CD CE NZ
REMARK 470 SER C 28 OG
REMARK 470 PHE C 29 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLU C 48 CG CD OE1 OE2
REMARK 470 GLU C 59 CG CD OE1 OE2
REMARK 470 GLU C 74 CG CD OE1 OE2
REMARK 470 LYS C 77 CG CD CE NZ
REMARK 470 GLU C 80 CG CD OE1 OE2
REMARK 470 SER D 12 OG
REMARK 470 LEU D 78 CG CD1 CD2
REMARK 470 ARG D 79 CG CD NE CZ NH1 NH2
REMARK 470 PHE D 123 CG CD1 CD2 CE1 CE2 CZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 2 65.99 26.99
REMARK 500 TYR A 108 -87.92 -99.82
REMARK 500 ASP A 245 74.34 54.71
REMARK 500 GLU A 279 40.63 -95.48
REMARK 500 THR A 337 -75.44 -95.59
REMARK 500 PRO A 348 -8.59 -56.54
REMARK 500 THR A 349 -12.14 70.78
REMARK 500 PHE A 404 -8.70 69.99
REMARK 500 HIS B 37 18.58 -143.31
REMARK 500 THR B 109 -97.25 -107.52
REMARK 500 CYS B 131 86.68 -158.15
REMARK 500 THR B 276 -156.38 -92.86
REMARK 500 LEU C 11 84.26 -68.48
REMARK 500 ARG C 83 39.47 -75.25
REMARK 500 SER D 12 -134.09 43.92
REMARK 500 ASP D 77 -169.29 -79.09
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 502 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GTP A 501 O2G
REMARK 620 2 GTP A 501 O2B 59.8
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 501
DBREF 6GVM A 1 451 UNP D0VWZ0 D0VWZ0_SHEEP 1 451
DBREF 6GVM B 1 455 UNP D0VWY9 D0VWY9_SHEEP 1 445
DBREF 6GVM C 4 90 PDB 6GVM 6GVM 4 90
DBREF 6GVM D 1 169 PDB 6GVM 6GVM 1 169
SEQADV 6GVM SER A 232 UNP D0VWZ0 GLY 232 CONFLICT
SEQADV 6GVM SER A 340 UNP D0VWZ0 THR 340 CONFLICT
SEQADV 6GVM CYS B 203 UNP D0VWY9 SER 201 CONFLICT
SEQADV 6GVM ILE B 318 UNP D0VWY9 VAL 316 CONFLICT
SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY
SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU
SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP
SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE
SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA
SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL
SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN
SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA
SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU
SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR
SEQRES 11 A 451 GLY LEU GLN GLY PHE LEU VAL PHE HIS SER PHE GLY GLY
SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG
SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE
SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL
SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU
SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA
SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG
SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE SER GLN ILE
SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA
SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL
SEQRES 21 A 451 PRO TYR PRO ARG ILE HIS PHE PRO LEU ALA THR TYR ALA
SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU
SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA
SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR
SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO
SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS
SEQRES 27 A 451 ARG SER ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE
SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLN PRO PRO THR VAL VAL PRO
SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET
SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG
SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA
SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY
SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU
SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY
SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR
SEQRES 1 B 445 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY
SEQRES 2 B 445 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP
SEQRES 3 B 445 GLU HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP
SEQRES 4 B 445 SER ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN
SEQRES 5 B 445 GLU ALA THR GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU
SEQRES 6 B 445 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER
SEQRES 7 B 445 GLY PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL
SEQRES 8 B 445 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY
SEQRES 9 B 445 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU
SEQRES 10 B 445 ASP VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU
SEQRES 11 B 445 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR
SEQRES 12 B 445 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG
SEQRES 13 B 445 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL
SEQRES 14 B 445 MET PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO
SEQRES 15 B 445 TYR ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN
SEQRES 16 B 445 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR
SEQRES 17 B 445 ASP ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR
SEQRES 18 B 445 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER
SEQRES 19 B 445 GLY VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN
SEQRES 20 B 445 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE
SEQRES 21 B 445 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU
SEQRES 22 B 445 THR SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL
SEQRES 23 B 445 PRO GLU LEU THR GLN GLN MET PHE ASP SER LYS ASN MET
SEQRES 24 B 445 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR
SEQRES 25 B 445 VAL ALA ALA ILE PHE ARG GLY ARG MET SER MET LYS GLU
SEQRES 26 B 445 VAL ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER
SEQRES 27 B 445 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR
SEQRES 28 B 445 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER
SEQRES 29 B 445 ALA THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU
SEQRES 30 B 445 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG
SEQRES 31 B 445 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET
SEQRES 32 B 445 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN
SEQRES 33 B 445 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR
SEQRES 34 B 445 ALA ASP GLU GLN GLY GLU PHE GLU GLU GLU GLU GLY GLU
SEQRES 35 B 445 ASP GLU ALA
SEQRES 1 C 87 ALA ASP MET GLU VAL ILE GLU LEU ASN LYS ALA THR SER
SEQRES 2 C 87 GLY GLN SER TRP GLU VAL ILE LEU LYS PRO PRO SER PHE
SEQRES 3 C 87 ASP GLY VAL PRO GLU PHE ASN ALA SER LEU PRO ARG ARG
SEQRES 4 C 87 ARG ASP PRO SER LEU GLU GLU ILE GLN LYS LYS LEU GLU
SEQRES 5 C 87 ALA ALA GLU GLU ARG ARG LYS ALA HIS PHE ALA ALA MET
SEQRES 6 C 87 LEU GLU ARG LEU GLN GLU LYS ASP LYS HIS ALA GLU GLU
SEQRES 7 C 87 VAL ARG LYS ASN LYS GLU LEU LYS GLU
SEQRES 1 D 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP
SEQRES 2 D 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN
SEQRES 3 D 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP
SEQRES 4 D 169 VAL ASN ALA TRP ASP THR SER GLY LEU THR PRO LEU HIS
SEQRES 5 D 169 LEU ALA ALA THR PHE GLY HIS LEU GLU ILE VAL GLU VAL
SEQRES 6 D 169 LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA THR ASP LEU
SEQRES 7 D 169 ARG GLY ASP THR PRO LEU HIS LEU ALA ALA GLU VAL GLY
SEQRES 8 D 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS HIS GLY ALA
SEQRES 9 D 169 ASP VAL ASN ALA HIS ASP THR PHE GLY TYR THR PRO LEU
SEQRES 10 D 169 HIS LEU ALA ALA LEU PHE GLY HIS LEU GLU ILE VAL GLU
SEQRES 11 D 169 VAL LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA GLN ASP
SEQRES 12 D 169 LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN
SEQRES 13 D 169 GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN
HET GTP A 501 32
HET MG A 502 1
HET GDP B 501 28
HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE
HETNAM MG MAGNESIUM ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
FORMUL 5 GTP C10 H16 N5 O14 P3
FORMUL 6 MG MG 2+
FORMUL 7 GDP C10 H15 N5 O11 P2
HELIX 1 AA1 GLY A 10 GLY A 29 1 20
HELIX 2 AA2 ASP A 47 THR A 51 5 5
HELIX 3 AA3 PRO A 72 GLY A 81 1 10
HELIX 4 AA4 HIS A 88 GLU A 90 5 3
HELIX 5 AA5 ASN A 102 TYR A 108 1 7
HELIX 6 AA6 ILE A 110 GLU A 113 5 4
HELIX 7 AA7 ILE A 114 GLN A 128 1 15
HELIX 8 AA8 GLY A 143 TYR A 161 1 19
HELIX 9 AA9 VAL A 182 LEU A 195 1 14
HELIX 10 AB1 GLU A 196 SER A 198 5 3
HELIX 11 AB2 ASN A 206 ASN A 216 1 11
HELIX 12 AB3 THR A 223 ASP A 245 1 23
HELIX 13 AB4 ASP A 251 VAL A 260 1 10
HELIX 14 AB5 SER A 287 ALA A 294 1 8
HELIX 15 AB6 CYS A 295 GLN A 301 5 7
HELIX 16 AB7 ASP A 306 GLY A 310 5 5
HELIX 17 AB8 VAL A 324 ARG A 339 1 16
HELIX 18 AB9 ILE A 384 ALA A 400 1 17
HELIX 19 AC1 PHE A 404 GLY A 410 1 7
HELIX 20 AC2 GLU A 415 GLY A 436 1 22
HELIX 21 AC3 GLY B 10 GLY B 29 1 20
HELIX 22 AC4 ASP B 41 ARG B 48 1 6
HELIX 23 AC5 ILE B 49 VAL B 51 5 3
HELIX 24 AC6 PRO B 72 GLY B 81 1 10
HELIX 25 AC7 PHE B 83 PHE B 87 5 5
HELIX 26 AC8 ARG B 88 ASP B 90 5 3
HELIX 27 AC9 ASN B 102 THR B 109 1 8
HELIX 28 AD1 THR B 109 CYS B 129 1 21
HELIX 29 AD2 GLY B 144 TYR B 161 1 18
HELIX 30 AD3 SER B 174 SER B 178 5 5
HELIX 31 AD4 VAL B 182 THR B 198 1 17
HELIX 32 AD5 ASN B 206 LYS B 218 1 13
HELIX 33 AD6 THR B 223 THR B 239 1 17
HELIX 34 AD7 THR B 239 PHE B 244 1 6
HELIX 35 AD8 ASP B 251 VAL B 260 1 10
HELIX 36 AD9 THR B 287 PHE B 296 1 10
HELIX 37 AE1 ASP B 297 MET B 301 5 5
HELIX 38 AE2 ASP B 306 GLY B 310 5 5
HELIX 39 AE3 SER B 324 ASN B 339 1 16
HELIX 40 AE4 SER B 340 PHE B 343 5 4
HELIX 41 AE5 ILE B 384 ARG B 401 1 18
HELIX 42 AE6 LEU B 405 GLY B 410 1 6
HELIX 43 AE7 ASP B 414 ALA B 438 1 25
HELIX 44 AE8 SER C 46 GLU C 81 1 36
HELIX 45 AE9 SER D 12 GLY D 25 1 14
HELIX 46 AF1 GLN D 26 ASN D 36 1 11
HELIX 47 AF2 THR D 49 GLY D 58 1 10
HELIX 48 AF3 HIS D 59 HIS D 69 1 11
HELIX 49 AF4 THR D 82 GLY D 91 1 10
HELIX 50 AF5 HIS D 92 HIS D 102 1 11
HELIX 51 AF6 THR D 115 GLY D 124 1 10
HELIX 52 AF7 HIS D 125 ASN D 135 1 11
HELIX 53 AF8 THR D 148 GLY D 157 1 10
HELIX 54 AF9 ASN D 158 LYS D 167 1 10
SHEET 1 AA1 6 LEU A 92 THR A 94 0
SHEET 2 AA1 6 ALA A 65 ASP A 69 1 N PHE A 67 O ILE A 93
SHEET 3 AA1 6 CYS A 4 VAL A 9 1 N HIS A 8 O VAL A 68
SHEET 4 AA1 6 GLY A 134 SER A 140 1 O LEU A 136 N ILE A 7
SHEET 5 AA1 6 SER A 165 TYR A 172 1 O LEU A 167 N VAL A 137
SHEET 6 AA1 6 CYS A 200 ASP A 205 1 O PHE A 202 N GLU A 168
SHEET 1 AA2 2 PHE A 53 GLU A 55 0
SHEET 2 AA2 2 HIS A 61 PRO A 63 -1 O VAL A 62 N SER A 54
SHEET 1 AA3 6 LEU A 269 ALA A 273 0
SHEET 2 AA3 6 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269
SHEET 3 AA3 6 TYR A 312 GLY A 321 -1 N MET A 313 O ASN A 380
SHEET 4 AA3 6 PHE A 351 ASN A 356 1 O LYS A 352 N LEU A 317
SHEET 5 AA3 6 GLY C 17 VAL C 22 -1 O TRP C 20 N VAL A 353
SHEET 6 AA3 6 VAL C 8 ALA C 14 -1 N ILE C 9 O GLU C 21
SHEET 1 AA410 PHE B 92 PHE B 94 0
SHEET 2 AA410 ALA B 65 ASP B 69 1 N LEU B 67 O VAL B 93
SHEET 3 AA410 GLU B 3 ALA B 9 1 N GLN B 8 O VAL B 68
SHEET 4 AA410 LEU B 132 SER B 140 1 O GLN B 136 N ILE B 7
SHEET 5 AA410 ILE B 165 MET B 172 1 O ILE B 165 N PHE B 135
SHEET 6 AA410 GLU B 200 ASP B 205 1 O TYR B 202 N THR B 168
SHEET 7 AA410 PHE B 267 ALA B 273 1 O PHE B 268 N THR B 201
SHEET 8 AA410 MET B 373 SER B 381 -1 O GLY B 379 N MET B 269
SHEET 9 AA410 TYR B 312 GLY B 321 -1 N LEU B 313 O ASN B 380
SHEET 10 AA410 VAL B 351 CYS B 356 1 O CYS B 356 N PHE B 319
SHEET 1 AA5 2 TYR B 53 ALA B 56 0
SHEET 2 AA5 2 LYS B 60 PRO B 63 -1 O LYS B 60 N ALA B 56
LINK O2G GTP A 501 MG MG A 502 1555 1555 2.44
LINK O2B GTP A 501 MG MG A 502 1555 1555 2.96
CISPEP 1 ALA A 273 PRO A 274 0 -1.07
CISPEP 2 ALA B 273 PRO B 274 0 -2.19
SITE 1 AC1 23 GLY A 10 GLN A 11 ALA A 12 GLN A 15
SITE 2 AC1 23 ASP A 69 ASP A 98 ALA A 99 ALA A 100
SITE 3 AC1 23 SER A 140 GLY A 143 THR A 145 GLY A 146
SITE 4 AC1 23 ILE A 171 VAL A 177 SER A 178 THR A 179
SITE 5 AC1 23 GLU A 183 ASN A 206 TYR A 224 ASN A 228
SITE 6 AC1 23 ILE A 231 MG A 502 LYS B 254
SITE 1 AC2 3 ASP A 69 GLU A 71 GTP A 501
SITE 1 AC3 16 GLY B 10 GLN B 11 CYS B 12 SER B 140
SITE 2 AC3 16 GLY B 143 GLY B 144 THR B 145 GLY B 146
SITE 3 AC3 16 VAL B 171 PRO B 173 VAL B 177 ASP B 179
SITE 4 AC3 16 GLU B 183 ASN B 206 TYR B 224 ASN B 228
CRYST1 189.267 51.721 144.137 90.00 121.03 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005284 0.000000 0.003178 0.00000
SCALE2 0.000000 0.019335 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008096 0.00000