data_6GVT # _entry.id 6GVT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6GVT WWPDB D_1200010628 BMRB 34290 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 34290 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6GVT _pdbx_database_status.recvd_initial_deposition_date 2018-06-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Boudet, J.' 1 ? 'Wiegand, T.' 2 ? 'Meier, B.H.' 3 ? 'Lipps, G.' 4 ? 'Allain, F.H.-T.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 176 _citation.language ? _citation.page_first 154 _citation.page_last 166.e13 _citation.title ;A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2018.11.031 _citation.pdbx_database_id_PubMed 30595448 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boudet, J.' 1 ? primary 'Devillier, J.C.' 2 ? primary 'Wiegand, T.' 3 ? primary 'Salmon, L.' 4 ? primary 'Meier, B.H.' 5 ? primary 'Lipps, G.' 6 ? primary 'Allain, F.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 2706.785 1 ? ? ? ? 2 polymer man 'functional pRN1 primase' 13528.738 1 ? ? ? 'The first stage of the hybrid structure determination includes structural data from the helix bundle domain quaternary structure' 3 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DT)(DG)(DC)(DT)(DC)(DA)' CTGTGCTCA A ? 2 'polypeptide(L)' no no ;TVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA ; ;TVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DC n 1 9 DA n 2 1 THR n 2 2 VAL n 2 3 VAL n 2 4 GLU n 2 5 PHE n 2 6 GLU n 2 7 GLU n 2 8 LEU n 2 9 ARG n 2 10 LYS n 2 11 GLU n 2 12 LEU n 2 13 VAL n 2 14 LYS n 2 15 ARG n 2 16 ASP n 2 17 SER n 2 18 GLY n 2 19 LYS n 2 20 PRO n 2 21 VAL n 2 22 GLU n 2 23 LYS n 2 24 ILE n 2 25 LYS n 2 26 GLU n 2 27 GLU n 2 28 ILE n 2 29 CYS n 2 30 THR n 2 31 LYS n 2 32 SER n 2 33 PRO n 2 34 PRO n 2 35 LYS n 2 36 LEU n 2 37 ILE n 2 38 LYS n 2 39 GLU n 2 40 ILE n 2 41 ILE n 2 42 CYS n 2 43 GLU n 2 44 ASN n 2 45 LYS n 2 46 THR n 2 47 TYR n 2 48 ALA n 2 49 ASP n 2 50 VAL n 2 51 ASN n 2 52 ILE n 2 53 ASP n 2 54 ARG n 2 55 SER n 2 56 ARG n 2 57 GLY n 2 58 ASP n 2 59 TRP n 2 60 HIS n 2 61 VAL n 2 62 ILE n 2 63 LEU n 2 64 TYR n 2 65 LEU n 2 66 MET n 2 67 LYS n 2 68 HIS n 2 69 GLY n 2 70 VAL n 2 71 THR n 2 72 ASP n 2 73 PRO n 2 74 ASP n 2 75 LYS n 2 76 ILE n 2 77 LEU n 2 78 GLU n 2 79 LEU n 2 80 LEU n 2 81 PRO n 2 82 ARG n 2 83 ASP n 2 84 SER n 2 85 LYS n 2 86 ALA n 2 87 LYS n 2 88 GLU n 2 89 ASN n 2 90 GLU n 2 91 LYS n 2 92 TRP n 2 93 ASN n 2 94 THR n 2 95 GLN n 2 96 LYS n 2 97 TYR n 2 98 PHE n 2 99 VAL n 2 100 ILE n 2 101 THR n 2 102 LEU n 2 103 SER n 2 104 LYS n 2 105 ALA n 2 106 TRP n 2 107 SER n 2 108 VAL n 2 109 VAL n 2 110 LYS n 2 111 LYS n 2 112 TYR n 2 113 LEU n 2 114 GLU n 2 115 ALA n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 115 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus islandicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 43080 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Sulfolobus islandicus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 43080 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6GVT 6GVT ? 1 ? 1 2 UNP Q54324_SULIS Q54324 ? 2 ;TVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA ; 256 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GVT A 1 ? 9 ? 6GVT 1 ? 9 ? 1 9 2 2 6GVT B 1 ? 115 ? Q54324 256 ? 370 ? 256 370 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 4 '3D HNCA' 2 isotropic 2 1 4 '3D HN(CO)CA' 2 isotropic 3 1 4 '3D HNCACB' 2 isotropic 4 1 4 '3D CBCA(CO)NH' 2 isotropic 5 1 4 '3D HNCO' 2 isotropic 6 1 4 '3D C(CO)NH' 2 isotropic 7 1 4 '3D H(CCO)NH' 2 isotropic 8 1 4 '3D 1H-15N NOESY' 1 isotropic 9 1 4 '3D 1H-13C NOESY aliphatic' 1 isotropic 10 1 4 '3D 1H-13C NOESY aromatic' 1 isotropic 11 1 5 '3D 1H-13C NOESY aromatic' 1 isotropic 12 2 6 '3D 1H-15N NOESY' 1 isotropic 13 1 9 '2D 1H-1H NOESY' 2 isotropic 14 1 9 '2D 1H-1H TOCSY' 2 isotropic 15 2 7 '2D 1H-1H NOESY' 2 isotropic 16 2 6 '2D 1H-1H TOCSY' 2 isotropic 17 1 5 '2D 1H-13C HSQC aromatic' 3 isotropic 18 1 5 '2D 1H-13C HSQC aliphatic' 3 isotropic 19 1 5 2D-F1fF2f-NOESY 2 isotropic 20 1 5 2D-F2f-NOESY 2 isotropic 21 1 5 3D-13C-aliphatic-HfilteredHedited-NOESY 2 isotropic 22 1 5 3D-13C-aliphatic-HfilteredHedited-NOESY 2 isotropic 23 2 10 3D-13C-aromatic-HfilteredHedited-NOESY 2 isotropic 24 2 10 3D-13C-aromatic-HfilteredHedited-NOESY 2 isotropic 25 3 7 2D-imino-NOESY 2 isotropic 26 1 7 2D-natural-abundance-Chsqc 3 isotropic 27 4 8 DARR 4 isotropic 28 4 8 'NCX(R)' 4 isotropic 29 4 8 'NCX(W)' 4 isotropic 30 4 8 CHHP 5 isotropic 31 4 8 NHHP 5 isotropic 32 4 8 '31P CPMAS' 5 isotropic 33 4 8 31P-31P-DARR 5 isotropic 34 4 8 '31P CPMAS' 4 isotropic 35 1 4 '2D 1H-15N HSQC' 1 isotropic 36 2 4 '2D 1H-15N HSQC' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm ambient 7.0 '50 mM NaCl 10mM MgCl2' '25mM phosphate buffer, NaCl 50mM' ? mM NMR-solution-pH7 ? pH ? ? K 2 298 atm ambient 5.0 '100 mM NaCl 10mM MgCl2' '25mM acetate buffer, NaCl 100mM' ? mM NMR-solution-pH5-25C ? pH ? ? K 3 278 atm ambient 5.0 '100 mM NaCl 10mM MgCl2' ? ? mM NMR-solution-pH5-5C ? pH ? ? K 4 278 atm ambient 7.0 '50 mM NaCl 10mM MgCl2' ? ? mM NMR-solid-state ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 4 ;1.0 mM [U-99% 13C; U-99% 15N] pRN1 helix bundle domain in complex with DNA and ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10 mM magnesium, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C-15N-hbd-hybrid-H2O-pH7 solution ? 5 ;0.7 mM [U-100% 13C] pRN1 helix bundle domain in complex with DNA and ATP, 0.7 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10.0 mM magnesium, 100% D2O ; '100% D2O' 13C-hbd-hybrid-D2O-pH7 solution ? 6 ;1.0 mM [U-99% 15N] pRN1 helix bundle domain in complex with DNA and ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10.0 mM magnesium, 90% H2O/10% D2O ; '90% H2O/10% D2O' 15N-hbd-hybrid-H2O-pH5 solution ? 7 ;1.0 mM pRN1 the helix bundle domain in complex with DNA and ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10.0 mM magnesium, 90% H2O/10% D2O ; '90% H2O/10% D2O' 1H-hbd-hybrid-H2O-pH5 solution ? 9 ;1.0 mM pRN1 helix bundle domain in complex with DNA and ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10.0 mM magnesium, 90% H2O/10% D2O ; '90% H2O/10% D2O' 1H-hbd-hybrid-H2O-pH7 solution ? 8 ;4.0 mM [U-99% 13C; U-99% 15N] functional-pRN1-primase, 4.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 10.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10.0 mM magnesium, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C-15N-pRN1-primase-solid-state solid ? 10 ;1.0 mM [U-100% 13C] pRN1 helix bundle domain in complex with DNA and ATP, 1.0 mM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 mM ADENOSINE-5'-TRIPHOSPHATE, 10 mM magnesium, 100% D2O ; '100% D2O' 13C-hbd-hybrid-D2O-pH5 solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III HD' ? Bruker 900 ? 2 'AVANCE III' ? Bruker 700 ? 3 'AVANCE III' ? Bruker 600 ? 4 'AVANCE III' ? Bruker 850 ? 5 'AVANCE III' ? Bruker 500 ? # _pdbx_nmr_refine.entry_id 6GVT _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 6GVT _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6GVT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' CYANA ? 'Guntert P.' 2 'data analysis' Sparky ? Goddard 3 'chemical shift assignment' MARS ? 'Jung and Zweckstetter' 4 'peak picking' CANDID ? 'Herrmann, Guntert and Wuthrich' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 processing TopSpin ? 'Bruker Biospin' 7 'chemical shift assignment' Sparky ? Goddard 8 'data analysis' 'CcpNmr Analysis' ? CCPN 9 collection TopSpin ? 'Bruker Biospin' # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.entry_id _exptl.crystals_number _exptl.details _exptl.method _exptl.method_details ? ? ? ? ? 6GVT ? ? 'SOLUTION NMR' ? ? ? ? ? ? 6GVT ? ? 'SOLID-STATE NMR' ? # _struct.entry_id 6GVT _struct.title 'Hybrid structure of the pRN1 helix bundle domain in complex with DNA and 2 ATP molecules' _struct.pdbx_descriptor 'functional pRN1 primase/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GVT _struct_keywords.text 'pRN1 primase, dinucleotide formation, quaternary structure of the helix bundle domain, synergistic effect, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR B 1 ? LYS B 14 ? THR B 256 LYS B 269 1 ? 14 HELX_P HELX_P2 AA2 PRO B 20 ? CYS B 29 ? PRO B 275 CYS B 284 1 ? 10 HELX_P HELX_P3 AA3 PRO B 34 ? CYS B 42 ? PRO B 289 CYS B 297 1 ? 9 HELX_P HELX_P4 AA4 ASP B 53 ? HIS B 68 ? ASP B 308 HIS B 323 1 ? 16 HELX_P HELX_P5 AA5 ASP B 72 ? LEU B 79 ? ASP B 327 LEU B 334 1 ? 8 HELX_P HELX_P6 AA6 SER B 84 ? GLU B 88 ? SER B 339 GLU B 343 5 ? 5 HELX_P HELX_P7 AA7 ASN B 93 ? LEU B 113 ? ASN B 348 LEU B 368 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 29 SG ? ? ? 1_555 B CYS 42 SG ? ? B CYS 284 B CYS 297 1_555 ? ? ? ? ? ? ? 2.033 ? metalc1 metalc ? ? B ASP 53 OD2 ? ? ? 1_555 E MG . MG ? ? B ASP 308 B MG 403 1_555 ? ? ? ? ? ? ? 1.838 ? metalc2 metalc ? ? B GLU 88 OE2 ? ? ? 1_555 F MG . MG ? ? B GLU 343 B MG 404 1_555 ? ? ? ? ? ? ? 1.854 ? metalc3 metalc ? ? C ATP . O2G ? ? ? 1_555 E MG . MG ? ? B ATP 401 B MG 403 1_555 ? ? ? ? ? ? ? 1.816 ? metalc4 metalc ? ? C ATP . O2B ? ? ? 1_555 E MG . MG ? ? B ATP 401 B MG 403 1_555 ? ? ? ? ? ? ? 1.859 ? metalc5 metalc ? ? C ATP . O1A ? ? ? 1_555 E MG . MG ? ? B ATP 401 B MG 403 1_555 ? ? ? ? ? ? ? 1.839 ? metalc6 metalc ? ? D ATP . O1G ? ? ? 1_555 F MG . MG ? ? B ATP 402 B MG 404 1_555 ? ? ? ? ? ? ? 1.798 ? metalc7 metalc ? ? D ATP . O1B ? ? ? 1_555 F MG . MG ? ? B ATP 402 B MG 404 1_555 ? ? ? ? ? ? ? 1.910 ? metalc8 metalc ? ? D ATP . O1A ? ? ? 1_555 F MG . MG ? ? B ATP 402 B MG 404 1_555 ? ? ? ? ? ? ? 1.836 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ATP 401 ? 7 'binding site for residue ATP B 401' AC2 Software B ATP 402 ? 11 'binding site for residue ATP B 402' AC3 Software B MG 403 ? 2 'binding site for residue MG B 403' AC4 Software B MG 404 ? 3 'binding site for residue MG B 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 7 ASN B 51 ? ASN B 306 . ? 1_555 ? 3 AC1 7 ILE B 52 ? ILE B 307 . ? 1_555 ? 4 AC1 7 ASP B 53 ? ASP B 308 . ? 1_555 ? 5 AC1 7 ARG B 54 ? ARG B 309 . ? 1_555 ? 6 AC1 7 SER B 55 ? SER B 310 . ? 1_555 ? 7 AC1 7 MG E . ? MG B 403 . ? 1_555 ? 8 AC2 11 DG A 3 ? DG A 3 . ? 1_555 ? 9 AC2 11 ARG B 54 ? ARG B 309 . ? 1_555 ? 10 AC2 11 SER B 84 ? SER B 339 . ? 1_555 ? 11 AC2 11 LYS B 85 ? LYS B 340 . ? 1_555 ? 12 AC2 11 LYS B 87 ? LYS B 342 . ? 1_555 ? 13 AC2 11 GLU B 88 ? GLU B 343 . ? 1_555 ? 14 AC2 11 ASN B 89 ? ASN B 344 . ? 1_555 ? 15 AC2 11 GLU B 90 ? GLU B 345 . ? 1_555 ? 16 AC2 11 LYS B 91 ? LYS B 346 . ? 1_555 ? 17 AC2 11 TRP B 92 ? TRP B 347 . ? 1_555 ? 18 AC2 11 MG F . ? MG B 404 . ? 1_555 ? 19 AC3 2 ASP B 53 ? ASP B 308 . ? 1_555 ? 20 AC3 2 ATP C . ? ATP B 401 . ? 1_555 ? 21 AC4 3 GLU B 88 ? GLU B 343 . ? 1_555 ? 22 AC4 3 GLU B 90 ? GLU B 345 . ? 1_555 ? 23 AC4 3 ATP D . ? ATP B 402 . ? 1_555 ? # _atom_sites.entry_id 6GVT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DA 9 9 9 DA DA A . n B 2 1 THR 1 256 256 THR THR B . n B 2 2 VAL 2 257 257 VAL VAL B . n B 2 3 VAL 3 258 258 VAL VAL B . n B 2 4 GLU 4 259 259 GLU GLU B . n B 2 5 PHE 5 260 260 PHE PHE B . n B 2 6 GLU 6 261 261 GLU GLU B . n B 2 7 GLU 7 262 262 GLU GLU B . n B 2 8 LEU 8 263 263 LEU LEU B . n B 2 9 ARG 9 264 264 ARG ARG B . n B 2 10 LYS 10 265 265 LYS LYS B . n B 2 11 GLU 11 266 266 GLU GLU B . n B 2 12 LEU 12 267 267 LEU LEU B . n B 2 13 VAL 13 268 268 VAL VAL B . n B 2 14 LYS 14 269 269 LYS LYS B . n B 2 15 ARG 15 270 270 ARG ARG B . n B 2 16 ASP 16 271 271 ASP ASP B . n B 2 17 SER 17 272 272 SER SER B . n B 2 18 GLY 18 273 273 GLY GLY B . n B 2 19 LYS 19 274 274 LYS LYS B . n B 2 20 PRO 20 275 275 PRO PRO B . n B 2 21 VAL 21 276 276 VAL VAL B . n B 2 22 GLU 22 277 277 GLU GLU B . n B 2 23 LYS 23 278 278 LYS LYS B . n B 2 24 ILE 24 279 279 ILE ILE B . n B 2 25 LYS 25 280 280 LYS LYS B . n B 2 26 GLU 26 281 281 GLU GLU B . n B 2 27 GLU 27 282 282 GLU GLU B . n B 2 28 ILE 28 283 283 ILE ILE B . n B 2 29 CYS 29 284 284 CYS CYS B . n B 2 30 THR 30 285 285 THR THR B . n B 2 31 LYS 31 286 286 LYS LYS B . n B 2 32 SER 32 287 287 SER SER B . n B 2 33 PRO 33 288 288 PRO PRO B . n B 2 34 PRO 34 289 289 PRO PRO B . n B 2 35 LYS 35 290 290 LYS LYS B . n B 2 36 LEU 36 291 291 LEU LEU B . n B 2 37 ILE 37 292 292 ILE ILE B . n B 2 38 LYS 38 293 293 LYS LYS B . n B 2 39 GLU 39 294 294 GLU GLU B . n B 2 40 ILE 40 295 295 ILE ILE B . n B 2 41 ILE 41 296 296 ILE ILE B . n B 2 42 CYS 42 297 297 CYS CYS B . n B 2 43 GLU 43 298 298 GLU GLU B . n B 2 44 ASN 44 299 299 ASN ASN B . n B 2 45 LYS 45 300 300 LYS LYS B . n B 2 46 THR 46 301 301 THR THR B . n B 2 47 TYR 47 302 302 TYR TYR B . n B 2 48 ALA 48 303 303 ALA ALA B . n B 2 49 ASP 49 304 304 ASP ASP B . n B 2 50 VAL 50 305 305 VAL VAL B . n B 2 51 ASN 51 306 306 ASN ASN B . n B 2 52 ILE 52 307 307 ILE ILE B . n B 2 53 ASP 53 308 308 ASP ASP B . n B 2 54 ARG 54 309 309 ARG ARG B . n B 2 55 SER 55 310 310 SER SER B . n B 2 56 ARG 56 311 311 ARG ARG B . n B 2 57 GLY 57 312 312 GLY GLY B . n B 2 58 ASP 58 313 313 ASP ASP B . n B 2 59 TRP 59 314 314 TRP TRP B . n B 2 60 HIS 60 315 315 HIS HIS B . n B 2 61 VAL 61 316 316 VAL VAL B . n B 2 62 ILE 62 317 317 ILE ILE B . n B 2 63 LEU 63 318 318 LEU LEU B . n B 2 64 TYR 64 319 319 TYR TYR B . n B 2 65 LEU 65 320 320 LEU LEU B . n B 2 66 MET 66 321 321 MET MET B . n B 2 67 LYS 67 322 322 LYS LYS B . n B 2 68 HIS 68 323 323 HIS HIS B . n B 2 69 GLY 69 324 324 GLY GLY B . n B 2 70 VAL 70 325 325 VAL VAL B . n B 2 71 THR 71 326 326 THR THR B . n B 2 72 ASP 72 327 327 ASP ASP B . n B 2 73 PRO 73 328 328 PRO PRO B . n B 2 74 ASP 74 329 329 ASP ASP B . n B 2 75 LYS 75 330 330 LYS LYS B . n B 2 76 ILE 76 331 331 ILE ILE B . n B 2 77 LEU 77 332 332 LEU LEU B . n B 2 78 GLU 78 333 333 GLU GLU B . n B 2 79 LEU 79 334 334 LEU LEU B . n B 2 80 LEU 80 335 335 LEU LEU B . n B 2 81 PRO 81 336 336 PRO PRO B . n B 2 82 ARG 82 337 337 ARG ARG B . n B 2 83 ASP 83 338 338 ASP ASP B . n B 2 84 SER 84 339 339 SER SER B . n B 2 85 LYS 85 340 340 LYS LYS B . n B 2 86 ALA 86 341 341 ALA ALA B . n B 2 87 LYS 87 342 342 LYS LYS B . n B 2 88 GLU 88 343 343 GLU GLU B . n B 2 89 ASN 89 344 344 ASN ASN B . n B 2 90 GLU 90 345 345 GLU GLU B . n B 2 91 LYS 91 346 346 LYS LYS B . n B 2 92 TRP 92 347 347 TRP TRP B . n B 2 93 ASN 93 348 348 ASN ASN B . n B 2 94 THR 94 349 349 THR THR B . n B 2 95 GLN 95 350 350 GLN GLN B . n B 2 96 LYS 96 351 351 LYS LYS B . n B 2 97 TYR 97 352 352 TYR TYR B . n B 2 98 PHE 98 353 353 PHE PHE B . n B 2 99 VAL 99 354 354 VAL VAL B . n B 2 100 ILE 100 355 355 ILE ILE B . n B 2 101 THR 101 356 356 THR THR B . n B 2 102 LEU 102 357 357 LEU LEU B . n B 2 103 SER 103 358 358 SER SER B . n B 2 104 LYS 104 359 359 LYS LYS B . n B 2 105 ALA 105 360 360 ALA ALA B . n B 2 106 TRP 106 361 361 TRP TRP B . n B 2 107 SER 107 362 362 SER SER B . n B 2 108 VAL 108 363 363 VAL VAL B . n B 2 109 VAL 109 364 364 VAL VAL B . n B 2 110 LYS 110 365 365 LYS LYS B . n B 2 111 LYS 111 366 366 LYS LYS B . n B 2 112 TYR 112 367 367 TYR TYR B . n B 2 113 LEU 113 368 368 LEU LEU B . n B 2 114 GLU 114 369 369 GLU GLU B . n B 2 115 ALA 115 370 370 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP 1 401 400 ATP ATP B . D 3 ATP 1 402 410 ATP ATP B . E 4 MG 1 403 401 MG MG2 B . F 4 MG 1 404 411 MG MG2 B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2680 ? 1 MORE -31 ? 1 'SSA (A^2)' 8380 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? B ASP 53 ? B ASP 308 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 O2G ? C ATP . ? B ATP 401 ? 1_555 104.7 ? 2 OD2 ? B ASP 53 ? B ASP 308 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 O2B ? C ATP . ? B ATP 401 ? 1_555 104.2 ? 3 O2G ? C ATP . ? B ATP 401 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 O2B ? C ATP . ? B ATP 401 ? 1_555 97.3 ? 4 OD2 ? B ASP 53 ? B ASP 308 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 O1A ? C ATP . ? B ATP 401 ? 1_555 141.1 ? 5 O2G ? C ATP . ? B ATP 401 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 O1A ? C ATP . ? B ATP 401 ? 1_555 104.7 ? 6 O2B ? C ATP . ? B ATP 401 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 O1A ? C ATP . ? B ATP 401 ? 1_555 96.5 ? 7 OE2 ? B GLU 88 ? B GLU 343 ? 1_555 MG ? F MG . ? B MG 404 ? 1_555 O1G ? D ATP . ? B ATP 402 ? 1_555 95.1 ? 8 OE2 ? B GLU 88 ? B GLU 343 ? 1_555 MG ? F MG . ? B MG 404 ? 1_555 O1B ? D ATP . ? B ATP 402 ? 1_555 138.6 ? 9 O1G ? D ATP . ? B ATP 402 ? 1_555 MG ? F MG . ? B MG 404 ? 1_555 O1B ? D ATP . ? B ATP 402 ? 1_555 97.6 ? 10 OE2 ? B GLU 88 ? B GLU 343 ? 1_555 MG ? F MG . ? B MG 404 ? 1_555 O1A ? D ATP . ? B ATP 402 ? 1_555 124.1 ? 11 O1G ? D ATP . ? B ATP 402 ? 1_555 MG ? F MG . ? B MG 404 ? 1_555 O1A ? D ATP . ? B ATP 402 ? 1_555 101.1 ? 12 O1B ? D ATP . ? B ATP 402 ? 1_555 MG ? F MG . ? B MG 404 ? 1_555 O1A ? D ATP . ? B ATP 402 ? 1_555 91.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-26 2 'Structure model' 1 1 2019-01-09 3 'Structure model' 1 2 2019-01-23 4 'Structure model' 1 3 2019-08-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.name' 11 3 'Structure model' '_citation.journal_volume' 12 3 'Structure model' '_citation.page_first' 13 3 'Structure model' '_citation.page_last' 14 3 'Structure model' '_citation.year' 15 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 4 'pRN1 helix bundle domain in complex with DNA and ATP' 1.0 ? mM '[U-99% 13C; U-99% 15N]' 4 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 1.0 ? mM 'natural abundance' 4 "ADENOSINE-5'-TRIPHOSPHATE" 4.0 ? mM 'natural abundance' 4 magnesium 10 ? mM 'natural abundance' 5 'pRN1 helix bundle domain in complex with DNA and ATP' 0.7 ? mM '[U-100% 13C]' 5 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 0.7 ? mM 'natural abundance' 5 "ADENOSINE-5'-TRIPHOSPHATE" 4.0 ? mM 'natural abundance' 5 magnesium 10.0 ? mM 'natural abundance' 6 'pRN1 helix bundle domain in complex with DNA and ATP' 1.0 ? mM '[U-99% 15N]' 6 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 1.0 ? mM 'natural abundance' 6 "ADENOSINE-5'-TRIPHOSPHATE" 4.0 ? mM 'natural abundance' 6 magnesium 10.0 ? mM 'natural abundance' 7 'pRN1 the helix bundle domain in complex with DNA and ATP' 1.0 ? mM 'natural abundance' 7 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 1.0 ? mM 'natural abundance' 7 "ADENOSINE-5'-TRIPHOSPHATE" 4.0 ? mM 'natural abundance' 7 magnesium 10.0 ? mM 'natural abundance' 9 'pRN1 helix bundle domain in complex with DNA and ATP' 1.0 ? mM 'natural abundance' 9 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 1.0 ? mM 'natural abundance' 9 "ADENOSINE-5'-TRIPHOSPHATE" 4.0 ? mM 'natural abundance' 9 magnesium 10.0 ? mM 'natural abundance' 8 functional-pRN1-primase 4.0 ? mM '[U-99% 13C; U-99% 15N]' 8 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 4.0 ? mM 'natural abundance' 8 "ADENOSINE-5'-TRIPHOSPHATE" 10.0 ? mM 'natural abundance' 8 magnesium 10.0 ? mM 'natural abundance' 10 'pRN1 helix bundle domain in complex with DNA and ATP' 1.0 ? mM '[U-100% 13C]' 10 ;DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3') ; 1.0 ? mM 'natural abundance' 10 "ADENOSINE-5'-TRIPHOSPHATE" 4.0 ? mM 'natural abundance' 10 magnesium 10 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.19 108.30 1.89 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.89 108.30 2.59 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.51 108.30 2.21 0.30 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.04 108.30 2.74 0.30 N 5 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.78 108.30 2.48 0.30 N 6 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.40 108.30 3.10 0.30 N 7 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.49 108.30 2.19 0.30 N 8 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.83 108.30 2.53 0.30 N 9 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.17 108.30 2.87 0.30 N 10 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.97 108.30 2.67 0.30 N 11 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.26 108.30 2.96 0.30 N 12 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.62 108.30 2.32 0.30 N 13 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.73 108.30 2.43 0.30 N 14 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.34 108.30 3.04 0.30 N 15 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.20 108.30 1.90 0.30 N 16 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.96 108.30 2.66 0.30 N 17 2 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.73 108.30 2.43 0.30 N 18 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.64 108.30 2.34 0.30 N 19 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.23 108.30 2.93 0.30 N 20 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.61 108.30 3.31 0.30 N 21 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.52 108.30 2.22 0.30 N 22 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.48 108.30 2.18 0.30 N 23 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.23 108.30 1.93 0.30 N 24 3 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.79 108.30 2.49 0.30 N 25 3 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.09 108.30 2.79 0.30 N 26 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.22 108.30 2.92 0.30 N 27 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.03 108.30 3.73 0.30 N 28 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.21 108.30 1.91 0.30 N 29 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.76 108.30 2.46 0.30 N 30 4 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.77 108.30 2.47 0.30 N 31 4 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.59 108.30 2.29 0.30 N 32 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.19 108.30 1.89 0.30 N 33 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.12 108.30 2.82 0.30 N 34 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.40 108.30 2.10 0.30 N 35 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.64 108.30 2.34 0.30 N 36 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.12 108.30 2.82 0.30 N 37 5 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.82 108.30 2.52 0.30 N 38 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.53 108.30 2.23 0.30 N 39 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.89 108.30 2.59 0.30 N 40 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.67 108.30 3.37 0.30 N 41 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.74 108.30 2.44 0.30 N 42 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.72 108.30 2.42 0.30 N 43 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.90 108.30 2.60 0.30 N 44 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.47 108.30 2.17 0.30 N 45 6 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.60 108.30 2.30 0.30 N 46 6 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.05 108.30 2.75 0.30 N 47 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.57 108.30 2.27 0.30 N 48 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.85 108.30 2.55 0.30 N 49 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.11 108.30 3.81 0.30 N 50 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.69 108.30 2.39 0.30 N 51 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.64 108.30 2.34 0.30 N 52 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.25 108.30 1.95 0.30 N 53 7 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.70 108.30 2.40 0.30 N 54 7 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.92 108.30 2.62 0.30 N 55 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.27 108.30 1.97 0.30 N 56 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.82 108.30 2.52 0.30 N 57 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.71 108.30 2.41 0.30 N 58 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.95 108.30 2.65 0.30 N 59 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.28 108.30 1.98 0.30 N 60 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.12 108.30 1.82 0.30 N 61 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.21 108.30 1.91 0.30 N 62 8 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.70 108.30 2.40 0.30 N 63 8 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.26 108.30 1.96 0.30 N 64 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.21 108.30 1.91 0.30 N 65 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.64 108.30 3.34 0.30 N 66 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.81 108.30 2.51 0.30 N 67 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.38 108.30 2.08 0.30 N 68 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.51 108.30 2.21 0.30 N 69 9 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.55 108.30 2.25 0.30 N 70 9 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.78 108.30 2.48 0.30 N 71 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.44 108.30 2.14 0.30 N 72 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.30 108.30 3.00 0.30 N 73 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.99 108.30 3.69 0.30 N 74 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.67 108.30 2.37 0.30 N 75 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.34 108.30 3.04 0.30 N 76 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.14 108.30 1.84 0.30 N 77 10 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.49 108.30 2.19 0.30 N 78 10 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.75 108.30 2.45 0.30 N 79 11 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.21 108.30 1.91 0.30 N 80 11 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.03 108.30 2.73 0.30 N 81 11 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.48 108.30 3.18 0.30 N 82 11 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.28 108.30 1.98 0.30 N 83 11 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.01 108.30 2.71 0.30 N 84 11 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.59 108.30 2.29 0.30 N 85 11 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.63 108.30 2.33 0.30 N 86 11 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.72 108.30 2.42 0.30 N 87 12 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.36 108.30 2.06 0.30 N 88 12 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.94 108.30 2.64 0.30 N 89 12 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.07 108.30 2.77 0.30 N 90 12 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.13 108.30 1.83 0.30 N 91 12 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.12 108.30 1.82 0.30 N 92 12 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.87 108.30 2.57 0.30 N 93 12 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.63 108.30 2.33 0.30 N 94 13 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.41 108.30 2.11 0.30 N 95 13 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.41 108.30 2.11 0.30 N 96 13 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.94 108.30 2.64 0.30 N 97 13 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.37 108.30 3.07 0.30 N 98 13 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.54 108.30 2.24 0.30 N 99 13 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.69 108.30 2.39 0.30 N 100 13 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.24 108.30 1.94 0.30 N 101 13 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.79 108.30 2.49 0.30 N 102 13 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.02 108.30 2.72 0.30 N 103 14 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.10 108.30 1.80 0.30 N 104 14 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.83 108.30 2.53 0.30 N 105 14 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.45 108.30 3.15 0.30 N 106 14 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.37 108.30 2.07 0.30 N 107 14 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.63 108.30 2.33 0.30 N 108 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.14 108.30 1.84 0.30 N 109 14 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.00 108.30 2.70 0.30 N 110 14 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.81 108.30 2.51 0.30 N 111 15 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.30 108.30 3.00 0.30 N 112 15 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.83 108.30 2.53 0.30 N 113 15 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.41 108.30 2.11 0.30 N 114 15 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.27 108.30 1.97 0.30 N 115 16 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.42 108.30 2.12 0.30 N 116 16 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.72 108.30 2.42 0.30 N 117 16 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.30 122.90 -3.60 0.60 N 118 16 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.04 108.30 3.74 0.30 N 119 16 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.74 108.30 2.44 0.30 N 120 16 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.90 108.30 2.60 0.30 N 121 16 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.68 108.30 2.38 0.30 N 122 16 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.94 108.30 2.64 0.30 N 123 17 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.30 108.30 2.00 0.30 N 124 17 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.77 108.30 2.47 0.30 N 125 17 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.07 108.30 2.77 0.30 N 126 17 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.11 108.30 1.81 0.30 N 127 17 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.19 108.30 2.89 0.30 N 128 17 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.57 108.30 2.27 0.30 N 129 18 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.15 108.30 2.85 0.30 N 130 18 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.48 108.30 3.18 0.30 N 131 18 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.98 108.30 2.68 0.30 N 132 18 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.23 108.30 1.93 0.30 N 133 18 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.88 108.30 2.58 0.30 N 134 18 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.24 108.30 1.94 0.30 N 135 18 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.72 108.30 2.42 0.30 N 136 18 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.69 108.30 2.39 0.30 N 137 19 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.12 108.30 1.82 0.30 N 138 19 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.84 108.30 2.54 0.30 N 139 19 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.70 108.30 2.40 0.30 N 140 19 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.47 108.30 2.17 0.30 N 141 19 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.40 108.30 2.10 0.30 N 142 19 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.05 108.30 2.75 0.30 N 143 19 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.70 108.30 2.40 0.30 N 144 20 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.41 108.30 2.11 0.30 N 145 20 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.86 108.30 2.56 0.30 N 146 20 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.14 108.30 3.84 0.30 N 147 20 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.57 108.30 2.27 0.30 N 148 20 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.39 108.30 2.09 0.30 N 149 20 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.26 108.30 1.96 0.30 N 150 20 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.36 108.30 2.06 0.30 N 151 20 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.92 108.30 2.62 0.30 N 152 20 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.73 108.30 2.43 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU B 298 ? ? 58.51 17.35 2 1 THR B 301 ? ? -149.17 -149.62 3 1 THR B 326 ? ? -142.09 -23.32 4 1 GLU B 343 ? ? -140.04 -42.00 5 2 THR B 301 ? ? -148.55 -37.65 6 2 TYR B 302 ? ? -162.94 -25.08 7 2 GLU B 343 ? ? -139.27 -38.61 8 3 GLU B 298 ? ? 59.05 13.40 9 3 THR B 301 ? ? -151.03 -36.87 10 3 TYR B 302 ? ? -163.39 -22.75 11 3 THR B 326 ? ? -143.72 -141.70 12 3 ASP B 327 ? ? 64.08 117.55 13 3 GLU B 343 ? ? -147.70 -34.99 14 3 ASN B 344 ? ? 49.21 78.97 15 4 GLU B 298 ? ? 57.74 19.13 16 4 THR B 301 ? ? -149.39 -38.69 17 4 TYR B 302 ? ? -159.81 -25.66 18 4 THR B 326 ? ? -140.39 -24.88 19 4 GLU B 343 ? ? -141.47 -47.37 20 4 ASN B 344 ? ? 39.74 59.79 21 4 LYS B 346 ? ? -145.51 37.57 22 4 TRP B 347 ? ? -144.31 -23.45 23 4 ASN B 348 ? ? 62.60 135.95 24 5 CYS B 297 ? ? -69.86 1.99 25 5 THR B 301 ? ? -147.51 -37.63 26 5 TYR B 302 ? ? -161.93 -26.97 27 5 THR B 326 ? ? -140.29 -23.25 28 5 GLU B 343 ? ? -143.21 -47.24 29 6 GLU B 298 ? ? 58.14 17.83 30 6 THR B 301 ? ? -149.91 -37.37 31 6 TYR B 302 ? ? -160.18 -27.39 32 6 THR B 326 ? ? -144.65 -144.69 33 6 ASP B 327 ? ? 64.46 120.66 34 6 GLU B 343 ? ? -139.73 -37.97 35 7 GLU B 298 ? ? 59.97 16.45 36 7 THR B 301 ? ? -149.49 -37.53 37 7 TYR B 302 ? ? -166.59 -25.32 38 7 THR B 326 ? ? -134.21 -141.31 39 7 ASP B 327 ? ? 63.79 125.60 40 7 GLU B 343 ? ? -135.55 -49.24 41 7 ASN B 344 ? ? 49.71 77.47 42 7 LYS B 346 ? ? -134.69 -30.45 43 8 CYS B 297 ? ? -69.87 1.86 44 8 GLU B 298 ? ? 58.31 19.01 45 8 THR B 301 ? ? -152.14 -36.01 46 8 TYR B 302 ? ? -160.01 -26.63 47 8 THR B 326 ? ? -140.02 -23.68 48 8 GLU B 343 ? ? -142.50 -45.63 49 8 ASN B 344 ? ? 41.24 79.53 50 9 THR B 301 ? ? -150.39 -152.80 51 9 THR B 326 ? ? -143.34 -24.08 52 9 GLU B 343 ? ? -139.01 -39.62 53 9 LYS B 346 ? ? -143.95 26.90 54 10 THR B 301 ? ? -149.82 -35.74 55 10 TYR B 302 ? ? -160.66 -28.01 56 10 THR B 326 ? ? -144.04 -27.22 57 10 GLU B 343 ? ? -140.73 -40.89 58 10 ASN B 344 ? ? 52.34 94.26 59 10 LYS B 346 ? ? -153.13 -27.48 60 11 THR B 301 ? ? -146.83 -40.28 61 11 TYR B 302 ? ? -166.18 -19.32 62 11 THR B 326 ? ? -146.63 -145.33 63 11 ASP B 327 ? ? 63.13 117.85 64 11 GLU B 343 ? ? -140.52 -40.09 65 11 ASN B 344 ? ? 39.95 64.67 66 12 GLU B 298 ? ? 59.33 17.14 67 12 THR B 301 ? ? -149.63 -35.06 68 12 TYR B 302 ? ? -161.51 -28.83 69 12 GLU B 343 ? ? -146.03 -33.34 70 12 ASN B 344 ? ? 49.36 74.23 71 12 LYS B 346 ? ? -142.88 19.54 72 13 CYS B 297 ? ? -68.82 1.09 73 13 THR B 301 ? ? -147.41 -38.82 74 13 TYR B 302 ? ? -162.02 -24.41 75 13 THR B 326 ? ? -141.43 -23.87 76 13 GLU B 343 ? ? -143.66 -40.03 77 13 ASN B 344 ? ? 38.82 69.10 78 14 SER B 287 ? ? -118.38 58.40 79 14 THR B 301 ? ? -147.86 -49.02 80 14 TYR B 302 ? ? -145.46 -24.97 81 14 GLU B 343 ? ? -145.67 -44.37 82 14 ASN B 344 ? ? 49.28 70.10 83 15 THR B 301 ? ? -155.55 -35.99 84 15 TYR B 302 ? ? -157.98 -25.88 85 15 THR B 326 ? ? -141.37 -143.92 86 15 ASP B 327 ? ? 64.27 127.20 87 15 GLU B 343 ? ? -143.58 -47.08 88 15 LYS B 346 ? ? -140.39 29.07 89 16 THR B 301 ? ? -151.38 -34.23 90 16 TYR B 302 ? ? -160.94 -26.99 91 16 GLU B 343 ? ? -138.48 -39.08 92 16 ASN B 344 ? ? 49.74 81.01 93 16 LYS B 346 ? ? -143.58 -28.84 94 17 GLU B 298 ? ? 57.69 17.47 95 17 THR B 301 ? ? -149.33 -37.26 96 17 TYR B 302 ? ? -159.94 -26.93 97 17 THR B 326 ? ? -140.01 -22.13 98 17 GLU B 343 ? ? -134.97 -39.71 99 18 THR B 301 ? ? -152.08 -37.73 100 18 TYR B 302 ? ? -159.45 -26.01 101 18 GLU B 343 ? ? -138.48 -41.13 102 18 ASN B 344 ? ? 38.51 62.54 103 19 THR B 301 ? ? -147.55 -36.84 104 19 TYR B 302 ? ? -164.24 -26.24 105 19 GLU B 343 ? ? -139.45 -40.32 106 20 THR B 301 ? ? -150.51 -35.49 107 20 TYR B 302 ? ? -160.07 -27.14 108 20 THR B 326 ? ? -142.56 -23.45 109 20 GLU B 343 ? ? -143.57 -44.14 110 20 ASN B 344 ? ? 39.36 63.39 # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number 310030_163345 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "ADENOSINE-5'-TRIPHOSPHATE" ATP 4 'MAGNESIUM ION' MG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #