HEADER VIRAL PROTEIN 21-JUN-18 6GVY TITLE MUTANT M16A OF RNA DEPENDENT RNA POLYMERASE 3D FROM FOOT-AND-MOUTH TITLE 2 DISEASE VIRUS COMPLEXED WITH AN TEMPLATE -PRIMER RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*CP*CP*GP*GP*G)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: RNA (5'-R(P*CP*UP*CP*CP*CP*GP*GP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 3 ORGANISM_TAXID: 12116; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS RNA DEPENDENT RNA POLYMERASE, PICORNAVIRUS, CLOSED RIGHT HAND KEYWDS 2 CONFORMATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.VERDAGUER,C.FERRER-ORTA REVDAT 4 17-JAN-24 6GVY 1 REMARK REVDAT 3 10-OCT-18 6GVY 1 JRNL REVDAT 2 15-AUG-18 6GVY 1 JRNL REVDAT 1 01-AUG-18 6GVY 0 JRNL AUTH I.DE LA HIGUERA,C.FERRER-ORTA,E.MORENO,A.I.DE AVILA, JRNL AUTH 2 M.E.SORIA,K.SINGH,F.CARIDI,F.SOBRINO,S.G.SARAFIANOS, JRNL AUTH 3 C.PERALES,N.VERDAGUER,E.DOMINGO JRNL TITL CONTRIBUTION OF A MULTIFUNCTIONAL POLYMERASE REGION OF JRNL TITL 2 FOOT-AND-MOUTH DISEASE VIRUS TO LETHAL MUTAGENESIS. JRNL REF J. VIROL. V. 92 2018 JRNL REFN ESSN 1098-5514 JRNL PMID 30068642 JRNL DOI 10.1128/JVI.01119-18 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.5140 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.5670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3725 REMARK 3 NUCLEIC ACID ATOMS : 258 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.355 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4105 ; 0.004 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3510 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5616 ; 0.907 ; 1.623 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8214 ; 0.780 ; 1.685 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;33.131 ;21.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 623 ;15.146 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.028 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4493 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 1.306 ; 4.866 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1898 ; 1.306 ; 4.863 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2372 ; 2.225 ; 7.292 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2373 ; 2.225 ; 7.296 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2206 ; 1.156 ; 5.154 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2206 ; 1.155 ; 5.154 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3245 ; 1.940 ; 7.708 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4597 ; 4.026 ;56.548 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4598 ; 4.025 ;56.555 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4784 26.4958 23.9383 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.1912 REMARK 3 T33: 0.0203 T12: -0.0007 REMARK 3 T13: -0.0374 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3316 L22: 2.1414 REMARK 3 L33: 0.8769 L12: -0.0816 REMARK 3 L13: 0.4031 L23: -0.4510 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: -0.0163 S13: 0.0339 REMARK 3 S21: -0.1500 S22: 0.0866 S23: -0.0792 REMARK 3 S31: 0.1079 S32: -0.1471 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 916 B 920 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9360 36.6482 23.8513 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.1613 REMARK 3 T33: 0.1343 T12: 0.0364 REMARK 3 T13: 0.0278 T23: 0.1070 REMARK 3 L TENSOR REMARK 3 L11: 4.3706 L22: 7.6767 REMARK 3 L33: 10.1618 L12: -4.3498 REMARK 3 L13: -2.2428 L23: 7.7242 REMARK 3 S TENSOR REMARK 3 S11: -0.3231 S12: -0.4263 S13: -0.1015 REMARK 3 S21: 0.2761 S22: 0.4318 S23: 0.0080 REMARK 3 S31: 0.0907 S32: 0.2211 S33: -0.1087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 904 C 910 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0810 34.5034 30.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1507 REMARK 3 T33: 0.1217 T12: 0.0378 REMARK 3 T13: 0.0154 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: 0.0025 REMARK 3 L33: 0.0173 L12: -0.0010 REMARK 3 L13: -0.0097 L23: -0.0020 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0107 S13: 0.0010 REMARK 3 S21: 0.0143 S22: 0.0168 S23: -0.0001 REMARK 3 S31: 0.0243 S32: -0.0378 S33: 0.0140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1WNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M MAGNESIUM ACETATE, REMARK 280 0.1M MES[2-(N-MORPHOLINO) ETHANESULFONIC ACID] PH 6.0 AND 4% REMARK 280 BUTYROLACTONE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.53733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.26867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.26867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.53733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 C C 903 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 SER A 370 OG REMARK 470 ASP A 371 CG OD1 OD2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 50.05 -140.72 REMARK 500 GLU A 10 -71.92 -52.14 REMARK 500 VAL A 15 -87.97 -84.32 REMARK 500 ALA A 16 -52.98 -162.70 REMARK 500 ARG A 17 -43.81 85.08 REMARK 500 ASN A 31 62.02 39.94 REMARK 500 PHE A 261 44.76 -108.14 REMARK 500 GLU A 286 -128.87 54.45 REMARK 500 ASP A 371 93.48 62.70 REMARK 500 LYS A 372 83.80 -66.98 REMARK 500 CYS A 467 -90.49 70.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 DBREF 6GVY A 1 470 UNP Q0QEE0 Q0QEE0_9PICO 1525 1994 DBREF 6GVY B 916 920 PDB 6GVY 6GVY 916 920 DBREF 6GVY C 903 910 PDB 6GVY 6GVY 903 910 SEQADV 6GVY ALA A 16 UNP Q0QEE0 MET 1540 ENGINEERED MUTATION SEQADV 6GVY ALA A 471 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY ALA A 472 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY ALA A 473 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY LEU A 474 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY GLU A 475 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY HIS A 476 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY HIS A 477 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY HIS A 478 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY HIS A 479 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY HIS A 480 UNP Q0QEE0 EXPRESSION TAG SEQADV 6GVY HIS A 481 UNP Q0QEE0 EXPRESSION TAG SEQRES 1 A 481 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 481 HIS VAL ALA ARG LYS THR LYS LEU ALA PRO THR VAL ALA SEQRES 3 A 481 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 481 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 481 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 481 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 481 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 481 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 481 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 481 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 481 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 481 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 481 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 481 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 481 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 481 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 481 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 481 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 481 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 481 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 481 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 481 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 481 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 481 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 481 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 481 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 481 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 481 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 481 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 481 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 481 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 481 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 481 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 481 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 481 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 481 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 481 ASP ALA ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 5 C C G G G SEQRES 1 C 8 C U C C C G G G HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *42(H2 O) HELIX 1 AA1 ALA A 26 ASN A 31 1 6 HELIX 2 AA2 VAL A 51 ILE A 56 1 6 HELIX 3 AA3 SER A 67 GLY A 90 1 24 HELIX 4 AA4 SER A 97 GLY A 104 1 8 HELIX 5 AA5 PRO A 120 GLN A 124 5 5 HELIX 6 AA6 ARG A 127 LEU A 131 1 5 HELIX 7 AA7 GLY A 140 LYS A 152 1 13 HELIX 8 AA8 MET A 170 ALA A 175 1 6 HELIX 9 AA9 PRO A 185 ASN A 206 1 22 HELIX 10 AB1 ASN A 218 ALA A 231 1 14 HELIX 11 AB2 CYS A 249 PHE A 261 1 13 HELIX 12 AB3 ARG A 262 GLY A 266 5 5 HELIX 13 AB4 PRO A 269 THR A 277 1 9 HELIX 14 AB5 ALA A 302 TYR A 323 1 22 HELIX 15 AB6 GLU A 327 TYR A 331 5 5 HELIX 16 AB7 ASP A 349 SER A 359 1 11 HELIX 17 AB8 SER A 379 ASP A 382 5 4 HELIX 18 AB9 ALA A 404 SER A 413 1 10 HELIX 19 AC1 THR A 419 VAL A 432 1 14 HELIX 20 AC2 GLY A 435 GLU A 444 1 10 HELIX 21 AC3 PRO A 445 GLN A 447 5 3 HELIX 22 AC4 SER A 454 VAL A 466 1 13 SHEET 1 AA1 3 LEU A 2 ASP A 5 0 SHEET 2 AA1 3 ASN A 280 GLU A 293 -1 O GLU A 293 N LEU A 2 SHEET 3 AA1 3 ASP A 8 VAL A 13 -1 N VAL A 9 O ASN A 287 SHEET 1 AA2 4 LEU A 2 ASP A 5 0 SHEET 2 AA2 4 ASN A 280 GLU A 293 -1 O GLU A 293 N LEU A 2 SHEET 3 AA2 4 CYS A 159 LEU A 163 1 N CYS A 159 O ALA A 284 SHEET 4 AA2 4 ILE A 180 VAL A 183 -1 O VAL A 183 N GLN A 160 SHEET 1 AA3 2 ALA A 22 PRO A 23 0 SHEET 2 AA3 2 PHE A 414 ALA A 415 -1 O ALA A 415 N ALA A 22 SHEET 1 AA4 2 PHE A 34 PRO A 36 0 SHEET 2 AA4 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 AA5 2 ILE A 132 ASP A 133 0 SHEET 2 AA5 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 AA6 4 THR A 332 TYR A 336 0 SHEET 2 AA6 4 ASP A 339 SER A 344 -1 O ALA A 343 N THR A 332 SHEET 3 AA6 4 ASN A 235 TYR A 241 -1 N TRP A 237 O VAL A 342 SHEET 4 AA6 4 ILE A 364 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 AA7 3 THR A 384 PHE A 385 0 SHEET 2 AA7 3 ARG A 388 ASP A 393 -1 O ARG A 388 N PHE A 385 SHEET 3 AA7 3 PHE A 398 VAL A 402 -1 O PHE A 398 N ASP A 393 CISPEP 1 LEU A 119 PRO A 120 0 2.32 SITE 1 AC1 7 TYR A 81 ARG A 84 PRO A 209 ASN A 312 SITE 2 AC1 7 LEU A 328 TYR A 331 MET A 333 CRYST1 94.073 94.073 99.806 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010630 0.006137 0.000000 0.00000 SCALE2 0.000000 0.012275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010019 0.00000