HEADER VIRAL PROTEIN 21-JUN-18 6GW2 TITLE GII.10 HUMAN NOROVIRUS PROTRUDING DOMAIN IN COMPLEX WITH TITLE 2 TAUROCHENODEOXYCHOLATE (TCDCA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NOROVIRUS, GII.10, P DOMAIN, TCDCA, HBGA, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KILIC,G.S.HANSMAN REVDAT 4 17-JAN-24 6GW2 1 REMARK REVDAT 3 16-JAN-19 6GW2 1 JRNL REVDAT 2 07-NOV-18 6GW2 1 JRNL REVDAT 1 17-OCT-18 6GW2 0 JRNL AUTH T.KILIC,A.KOROMYSLOVA,G.S.HANSMAN JRNL TITL STRUCTURAL BASIS FOR HUMAN NOROVIRUS CAPSID BINDING TO BILE JRNL TITL 2 ACIDS. JRNL REF J. VIROL. V. 93 2019 JRNL REFN ESSN 1098-5514 JRNL PMID 30355683 JRNL DOI 10.1128/JVI.01581-18 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1293 - 5.2613 1.00 2918 154 0.1682 0.1847 REMARK 3 2 5.2613 - 4.1769 1.00 2776 147 0.1331 0.1547 REMARK 3 3 4.1769 - 3.6492 1.00 2749 145 0.1454 0.1707 REMARK 3 4 3.6492 - 3.3156 1.00 2755 145 0.1637 0.2286 REMARK 3 5 3.3156 - 3.0780 1.00 2715 143 0.1804 0.2380 REMARK 3 6 3.0780 - 2.8966 1.00 2734 144 0.1786 0.2118 REMARK 3 7 2.8966 - 2.7515 1.00 2695 141 0.1815 0.2150 REMARK 3 8 2.7515 - 2.6318 1.00 2719 144 0.1878 0.2157 REMARK 3 9 2.6318 - 2.5305 1.00 2703 142 0.1875 0.2764 REMARK 3 10 2.5305 - 2.4431 1.00 2687 141 0.1784 0.2223 REMARK 3 11 2.4431 - 2.3668 1.00 2693 142 0.1868 0.2573 REMARK 3 12 2.3668 - 2.2991 1.00 2703 142 0.1816 0.2336 REMARK 3 13 2.2991 - 2.2386 1.00 2699 142 0.1858 0.2161 REMARK 3 14 2.2386 - 2.1840 1.00 2698 143 0.1960 0.2396 REMARK 3 15 2.1840 - 2.1343 1.00 2681 141 0.1995 0.2213 REMARK 3 16 2.1343 - 2.0889 1.00 2654 139 0.2223 0.2292 REMARK 3 17 2.0889 - 2.0471 0.95 2555 135 0.2567 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4921 REMARK 3 ANGLE : 0.685 6758 REMARK 3 CHIRALITY : 0.049 771 REMARK 3 PLANARITY : 0.004 875 REMARK 3 DIHEDRAL : 12.018 2857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6506 -35.2793 -33.6598 REMARK 3 T TENSOR REMARK 3 T11: 0.3739 T22: 0.2342 REMARK 3 T33: 0.2768 T12: 0.0447 REMARK 3 T13: -0.0300 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.2152 L22: 2.2246 REMARK 3 L33: 1.3791 L12: -0.5236 REMARK 3 L13: 0.0379 L23: 1.0741 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.1604 S13: -0.2140 REMARK 3 S21: -0.1203 S22: 0.0120 S23: -0.0550 REMARK 3 S31: 0.6247 S32: 0.2038 S33: -0.0361 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9230 -26.0914 -27.7863 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.2999 REMARK 3 T33: 0.3012 T12: -0.0283 REMARK 3 T13: -0.0286 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.7822 L22: 1.8721 REMARK 3 L33: 5.9770 L12: -0.7752 REMARK 3 L13: -2.3533 L23: 1.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.1393 S12: -0.0078 S13: 0.0255 REMARK 3 S21: -0.1261 S22: -0.1077 S23: 0.2169 REMARK 3 S31: 0.0949 S32: -0.3758 S33: -0.0088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2380 -27.0350 -20.4478 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.4494 REMARK 3 T33: 0.3955 T12: -0.1102 REMARK 3 T13: -0.0125 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 3.0505 L22: 2.2282 REMARK 3 L33: 1.2575 L12: -1.3089 REMARK 3 L13: 0.3810 L23: 1.1625 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: -0.2751 S13: -0.2485 REMARK 3 S21: 0.0085 S22: -0.1198 S23: 0.2848 REMARK 3 S31: 0.1789 S32: -0.3915 S33: -0.0072 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2891 -31.0189 -21.7014 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.2704 REMARK 3 T33: 0.2550 T12: -0.0825 REMARK 3 T13: -0.0432 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 1.7250 L22: 1.0715 REMARK 3 L33: 2.8818 L12: -0.0586 REMARK 3 L13: 0.0909 L23: 0.0609 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: -0.0591 S13: -0.1931 REMARK 3 S21: 0.0748 S22: -0.0479 S23: 0.1375 REMARK 3 S31: 0.5142 S32: -0.4311 S33: -0.0167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8883 -39.6651 -42.8247 REMARK 3 T TENSOR REMARK 3 T11: 0.6213 T22: 0.4540 REMARK 3 T33: 0.3279 T12: 0.2101 REMARK 3 T13: -0.0220 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 4.1938 L22: 4.3335 REMARK 3 L33: 1.2886 L12: -0.9136 REMARK 3 L13: 0.1807 L23: 0.0842 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: 0.6512 S13: -0.2309 REMARK 3 S21: -0.3153 S22: -0.1513 S23: -0.0973 REMARK 3 S31: 0.5689 S32: 0.4635 S33: 0.1292 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 522 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8702 -41.8443 -48.7645 REMARK 3 T TENSOR REMARK 3 T11: 0.7141 T22: 0.4562 REMARK 3 T33: 0.3027 T12: 0.2265 REMARK 3 T13: 0.0017 T23: -0.0977 REMARK 3 L TENSOR REMARK 3 L11: 1.3346 L22: 4.7719 REMARK 3 L33: 0.5133 L12: -2.1822 REMARK 3 L13: -0.0238 L23: 0.8383 REMARK 3 S TENSOR REMARK 3 S11: 0.2105 S12: 0.5593 S13: -0.3596 REMARK 3 S21: -0.6197 S22: -0.1137 S23: -0.2764 REMARK 3 S31: 0.7007 S32: 0.6299 S33: -0.2736 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2533 -13.2507 -26.8805 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.2406 REMARK 3 T33: 0.3282 T12: -0.0105 REMARK 3 T13: 0.0002 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.8905 L22: 1.0364 REMARK 3 L33: 4.0758 L12: 0.1506 REMARK 3 L13: 1.0441 L23: -1.3659 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.0858 S13: 0.1138 REMARK 3 S21: 0.0608 S22: -0.0861 S23: -0.1445 REMARK 3 S31: -0.1034 S32: 0.3873 S33: 0.0395 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 328 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6497 -25.7010 -13.8805 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.3171 REMARK 3 T33: 0.3405 T12: 0.0053 REMARK 3 T13: -0.0485 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.8776 L22: 4.0225 REMARK 3 L33: 2.9484 L12: -0.5091 REMARK 3 L13: 0.5843 L23: -2.4323 REMARK 3 S TENSOR REMARK 3 S11: 0.2978 S12: -0.1133 S13: -0.0630 REMARK 3 S21: -0.0142 S22: -0.3867 S23: -0.2820 REMARK 3 S31: 0.4364 S32: 0.3614 S33: 0.0985 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 355 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9568 -9.5805 -18.4745 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.2690 REMARK 3 T33: 0.3066 T12: -0.0561 REMARK 3 T13: -0.0143 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.5766 L22: 1.3857 REMARK 3 L33: 3.0026 L12: 0.2895 REMARK 3 L13: 0.1829 L23: -0.8262 REMARK 3 S TENSOR REMARK 3 S11: 0.1598 S12: -0.1566 S13: 0.2135 REMARK 3 S21: 0.2901 S22: -0.1318 S23: -0.1238 REMARK 3 S31: -0.4962 S32: 0.3558 S33: 0.0269 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0393 -5.3730 -43.7944 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.3783 REMARK 3 T33: 0.3490 T12: 0.0481 REMARK 3 T13: 0.0277 T23: 0.1303 REMARK 3 L TENSOR REMARK 3 L11: 2.3228 L22: 1.9466 REMARK 3 L33: 3.4842 L12: -0.4725 REMARK 3 L13: 0.1888 L23: -0.8386 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.3838 S13: 0.3069 REMARK 3 S21: -0.0518 S22: 0.0943 S23: 0.1843 REMARK 3 S31: -0.4230 S32: -0.2859 S33: -0.0890 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JUN 1, 2017 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09804 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64770 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,1M MAGNESIUM ACETATE TETRAHYDRATE REMARK 280 0,1M SODIUM CITRATE PH 5,8 14% W/V PEG 5000 MME, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.91500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.17000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 756 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 793 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 225 REMARK 465 VAL A 346 REMARK 465 PRO A 347 REMARK 465 GLY A 348 REMARK 465 GLU A 349 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 SER A 256 OG REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 ASP A 320 CG OD1 OD2 REMARK 470 THR A 345 OG1 CG2 REMARK 470 ASN A 351 CG OD1 ND2 REMARK 470 GLN A 384 CG CD OE1 NE2 REMARK 470 VAL A 433 CG1 CG2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 ARG A 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 501 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 520 CG OD1 ND2 REMARK 470 GLN A 531 CG CD OE1 NE2 REMARK 470 PHE A 532 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 ASN B 254 CG OD1 ND2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 THR B 345 OG1 CG2 REMARK 470 VAL B 346 CG1 CG2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 470 GLN B 384 CG CD OE1 NE2 REMARK 470 SER B 388 OG REMARK 470 VAL B 433 CG1 CG2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ASN B 510 CG OD1 ND2 REMARK 470 GLN B 531 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 243 83.03 -68.16 REMARK 500 ASN A 252 80.58 -152.37 REMARK 500 GLN A 260 46.40 -150.90 REMARK 500 ALA A 323 172.38 179.80 REMARK 500 GLN A 384 -27.59 -144.83 REMARK 500 ASP A 385 56.81 -90.34 REMARK 500 ASP A 526 -60.60 -104.57 REMARK 500 GLN B 260 49.74 -148.19 REMARK 500 GLN B 384 -38.99 -145.51 REMARK 500 ASP B 403 -177.11 -69.95 REMARK 500 VAL B 529 -168.06 -127.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TUD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TUD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GVZ RELATED DB: PDB REMARK 900 GII.1 WITH GCDCA REMARK 900 RELATED ID: 6GW0 RELATED DB: PDB REMARK 900 GII.1 WITH TCDCA REMARK 900 RELATED ID: 6GW1 RELATED DB: PDB REMARK 900 GII.10 WITH GCDCA DBREF 6GW2 A 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 DBREF 6GW2 B 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 SEQRES 1 A 314 LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU LEU SEQRES 2 A 314 THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU TYR SEQRES 3 A 314 THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN ASN SEQRES 4 A 314 GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR THR SEQRES 5 A 314 GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY LYS SEQRES 6 A 314 VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR HIS SEQRES 7 A 314 TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO PHE SEQRES 8 A 314 ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR PRO SEQRES 9 A 314 ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN ARG SEQRES 10 A 314 ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO ALA SEQRES 11 A 314 ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER PRO SEQRES 12 A 314 LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER THR SEQRES 13 A 314 TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR LYS SEQRES 14 A 314 PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SER SEQRES 15 A 314 HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY ALA SEQRES 16 A 314 LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA PRO SEQRES 17 A 314 VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER PHE SEQRES 18 A 314 ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE ASP SEQRES 19 A 314 CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR GLN SEQRES 20 A 314 GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL ARG SEQRES 21 A 314 TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU ALA SEQRES 22 A 314 LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG ASN SEQRES 23 A 314 SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR PHE SEQRES 24 A 314 ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU ALA SEQRES 25 A 314 PRO MET SEQRES 1 B 314 LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU LEU SEQRES 2 B 314 THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU TYR SEQRES 3 B 314 THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN ASN SEQRES 4 B 314 GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR THR SEQRES 5 B 314 GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY LYS SEQRES 6 B 314 VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR HIS SEQRES 7 B 314 TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO PHE SEQRES 8 B 314 ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR PRO SEQRES 9 B 314 ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN ARG SEQRES 10 B 314 ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO ALA SEQRES 11 B 314 ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER PRO SEQRES 12 B 314 LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER THR SEQRES 13 B 314 TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR LYS SEQRES 14 B 314 PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SER SEQRES 15 B 314 HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY ALA SEQRES 16 B 314 LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA PRO SEQRES 17 B 314 VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER PHE SEQRES 18 B 314 ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE ASP SEQRES 19 B 314 CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR GLN SEQRES 20 B 314 GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL ARG SEQRES 21 B 314 TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU ALA SEQRES 22 B 314 LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG ASN SEQRES 23 B 314 SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR PHE SEQRES 24 B 314 ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU ALA SEQRES 25 B 314 PRO MET HET TUD A 600 34 HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET TUD B 600 34 HET EDO B 601 4 HET EDO B 602 4 HETNAM TUD TAUROCHENODEOXYCHOLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN TUD 2-(((3ALPHA,5BETA,7ALPHA)-3,7-DIHYDROXY-24-OXOCHOLAN- HETSYN 2 TUD 24-YL)AMINO)ETHANESULFONIC ACID; HETSYN 3 TUD TAUROCHENODEOXYCHOLATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 TUD 2(C26 H45 N O6 S) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 10 HOH *273(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 THR A 370 LEU A 373 5 4 HELIX 4 AA4 PRO A 462 SER A 473 1 12 HELIX 5 AA5 THR B 233 LEU B 237 5 5 HELIX 6 AA6 LEU B 279 ILE B 283 5 5 HELIX 7 AA7 THR B 370 LEU B 373 5 4 HELIX 8 AA8 PRO B 462 SER B 473 1 12 SHEET 1 AA1 4 ALA A 456 CYS A 459 0 SHEET 2 AA1 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA1 4 VAL A 248 THR A 251 -1 N VAL A 248 O ARG A 443 SHEET 4 AA1 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 AA2 6 ALA A 456 CYS A 459 0 SHEET 2 AA2 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA2 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 AA2 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 AA2 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 AA2 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 AA3 7 PHE A 286 VAL A 294 0 SHEET 2 AA3 7 THR A 301 VAL A 307 -1 O ASN A 304 N THR A 291 SHEET 3 AA3 7 ASN A 375 THR A 380 -1 O ILE A 376 N MET A 305 SHEET 4 AA3 7 ASN A 355 ALA A 363 -1 N VAL A 361 O SER A 379 SHEET 5 AA3 7 GLN A 333 ARG A 341 -1 N ILE A 334 O ILE A 362 SHEET 6 AA3 7 PRO A 391 LEU A 399 -1 O LYS A 393 N SER A 339 SHEET 7 AA3 7 PHE A 286 VAL A 294 -1 N GLY A 288 O THR A 392 SHEET 1 AA4 8 GLY A 450 TYR A 452 0 SHEET 2 AA4 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 AA4 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 AA4 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 AA4 8 PHE B 286 VAL B 294 -1 N GLN B 292 O ASN B 304 SHEET 6 AA4 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 AA4 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 AA4 8 ALA B 354 ALA B 363 -1 O ALA B 360 N GLY B 336 SHEET 1 AA5 4 ALA B 456 CYS B 459 0 SHEET 2 AA5 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA5 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 AA5 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 AA6 6 ALA B 456 CYS B 459 0 SHEET 2 AA6 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA6 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 AA6 6 ARG B 492 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 AA6 6 VAL B 480 ASN B 487 -1 N ALA B 481 O LEU B 499 SHEET 6 AA6 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 SITE 1 AC1 9 HIS A 298 ARG A 299 GLY A 300 GLN A 333 SITE 2 AC1 9 TYR A 365 PRO A 367 SER A 379 TRP A 381 SITE 3 AC1 9 HOH A 726 SITE 1 AC2 5 GLU A 464 HIS A 468 HOH A 773 GLN B 471 SITE 2 AC2 5 HOH B 709 SITE 1 AC3 4 GLN A 277 LEU A 278 GLU B 236 HOH B 707 SITE 1 AC4 4 ASN A 355 ARG A 356 HOH A 701 GLY B 451 SITE 1 AC5 8 ARG B 299 GLY B 300 GLN B 333 TYR B 365 SITE 2 AC5 8 SER B 379 THR B 380 TRP B 381 HOH B 704 SITE 1 AC6 4 GLU B 464 HIS B 468 HOH B 709 HOH B 769 SITE 1 AC7 4 GLU A 236 GLN B 277 LEU B 278 HOH B 718 CRYST1 79.830 87.910 108.340 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009230 0.00000