data_6GW7 # _entry.id 6GW7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GW7 pdb_00006gw7 10.2210/pdb6gw7/pdb WWPDB D_1200010572 ? ? BMRB 34292 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'The CTD of HpDprA, a DNA binding Winged Helix domain which do not bind dsDNA' _pdbx_database_related.db_id 34292 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6GW7 _pdbx_database_status.recvd_initial_deposition_date 2018-06-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lisboa, J.' 1 ? 'Celma, L.' 2 ? 'Sanchez, D.' 3 ? 'Marquis, M.' 4 ? 'Andreani, J.' 5 ? 'Guerois, R.' 6 ? 'Ochsenbein, F.' 7 ? 'Durand, D.' 8 ? 'Marsin, S.' 9 ? 'Cuniasse, P.' 10 ? 'Radicella, J.P.' 11 ? 'Quevillon-Cheruel, S.' 12 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs J.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-464X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 286 _citation.language ? _citation.page_first 1941 _citation.page_last 1958 _citation.title 'The C-terminal domain of HpDprA is a DNA-binding winged helix domain that does not bind double-stranded DNA.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/febs.14788 _citation.pdbx_database_id_PubMed 30771270 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lisboa, J.' 1 ? primary 'Celma, L.' 2 ? primary 'Sanchez, D.' 3 ? primary 'Marquis, M.' 4 ? primary 'Andreani, J.' 5 ? primary 'Guerois, R.' 6 ? primary 'Ochsenbein, F.' 7 ? primary 'Durand, D.' 8 ? primary 'Marsin, S.' 9 ? primary 'Cuniasse, P.' 10 ? primary 'Radicella, J.P.' 11 ? primary 'Quevillon-Cheruel, S.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'DNA protecting protein DprA' _entity.formula_weight 7139.292 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MLKDYHLKEMPEMEDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLAHH _entity_poly.pdbx_seq_one_letter_code_can MLKDYHLKEMPEMEDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLAHH _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 LYS n 1 4 ASP n 1 5 TYR n 1 6 HIS n 1 7 LEU n 1 8 LYS n 1 9 GLU n 1 10 MET n 1 11 PRO n 1 12 GLU n 1 13 MET n 1 14 GLU n 1 15 ASP n 1 16 GLU n 1 17 PHE n 1 18 LEU n 1 19 GLU n 1 20 TYR n 1 21 CYS n 1 22 ALA n 1 23 LYS n 1 24 ASN n 1 25 PRO n 1 26 SER n 1 27 TYR n 1 28 GLU n 1 29 GLU n 1 30 ALA n 1 31 TYR n 1 32 LEU n 1 33 LYS n 1 34 PHE n 1 35 GLY n 1 36 ASP n 1 37 LYS n 1 38 LEU n 1 39 LEU n 1 40 GLU n 1 41 TYR n 1 42 GLU n 1 43 LEU n 1 44 LEU n 1 45 GLY n 1 46 LYS n 1 47 ILE n 1 48 LYS n 1 49 ARG n 1 50 ILE n 1 51 ASN n 1 52 HIS n 1 53 ILE n 1 54 VAL n 1 55 VAL n 1 56 LEU n 1 57 ALA n 1 58 HIS n 1 59 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 59 _entity_src_gen.gene_src_common_name 'Campylobacter pylori' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BB415_01075 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 210 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A2A6XLY0_HELPX _struct_ref.pdbx_db_accession A0A2A6XLY0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LKDYHLKEMPEMEDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA _struct_ref.pdbx_align_begin 211 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GW7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 57 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A2A6XLY0 _struct_ref_seq.db_align_beg 211 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 266 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 57 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6GW7 MET A 1 ? UNP A0A2A6XLY0 ? ? 'initiating methionine' 1 1 1 6GW7 HIS A 58 ? UNP A0A2A6XLY0 ? ? 'expression tag' 58 2 1 6GW7 HIS A 59 ? UNP A0A2A6XLY0 ? ? 'expression tag' 59 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 2 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 3 1 1 '3D 1H-15N NOESY' 1 isotropic 4 3 3 '2D 1H-15N HSQC' 2 isotropic 5 1 1 '3D 1H-15N TOCSY' 2 isotropic 6 1 1 '3D HNCA' 2 isotropic 7 1 1 '3D HBHA(CO)NH' 2 isotropic 8 1 1 '3D CBCA(CO)NH' 2 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 5.6 50 ;138 uM 20 mM phosphate buffer (NH2PO4), NaCl 50 mM, 0.1 mM EDTA, 0.1 mM DSS, 0.1 mM NaN3, protease inhibitors (Roche) ; ? mM 15N13C_sample_H2O ? pH ? ? K 2 298 atm 1 5.6 50 '20 mM phosphate buffer (NH2PO4), NaCl 50 mM, 0.1 mM EDTA, 0.1 mM DSS, 0.1 mM NaN3, protease inhibitors (Roche)' ? mM 13C15N_sample_D2O ? pD ? ? K 3 300 atm 1 7.4 50 '34 uM HpDprA CTD sample Tris Buffer NaCl' ? mM 15N_sample_titration ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '128 uM 15N,13C HpDprA CTD, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N13C_sample_H2O solution ? 2 '128 uM [U-13C; U-15N] C-terminal Domain of Helicobacter Pylori RecA-loader DNA Processing Protein A (DprA), 100% D2O' '100% D2O' 15N13C_sample_D2O solution ? 3 '34 uM [U-15N] C-terminal Domain of Helicobacter Pylori RecA-loader DNA Processing Protein A (DprA), 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_sample_H2O solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 950 ? 2 DRX ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 6GW7 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 6GW7 _pdbx_nmr_ensemble.conformers_calculated_total_number 80 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6GW7 _pdbx_nmr_representative.conformer_id 7 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin ? 'Bruker Biospin' 2 'chemical shift assignment' Sparky ? Goddard 3 'data analysis' 'CcpNmr Analysis' ? CCPN 4 'structure calculation' CANDID ? 'Herrmann, Guntert and Wuthrich' 5 refinement Xplor-NIH ? 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GW7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6GW7 _struct.title 'The CTD of HpDprA, a DNA binding Winged Helix domain which do not bind dsDNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GW7 _struct_keywords.text 'Winged Helix, DNA BINDING PROTEIN, DprA, Helicobacter pylori' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 14 ? CYS A 21 ? GLU A 14 CYS A 21 1 ? 8 HELX_P HELX_P2 AA2 SER A 26 ? LYS A 33 ? SER A 26 LYS A 33 1 ? 8 HELX_P HELX_P3 AA3 ASP A 36 ? LEU A 44 ? ASP A 36 LEU A 44 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 47 ? ARG A 49 ? ILE A 47 ARG A 49 AA1 2 VAL A 54 ? LEU A 56 ? VAL A 54 LEU A 56 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 48 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 48 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 55 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 55 # _atom_sites.entry_id 6GW7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 HIS 59 59 59 HIS HIS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5250 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-24 2 'Structure model' 1 1 2019-05-08 3 'Structure model' 1 2 2019-05-29 4 'Structure model' 1 3 2020-11-18 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_nmr_software 2 3 'Structure model' citation 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' refine 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_nmr_software.name' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? 'Axel T. Brunger' axel.brunger@yale.edu ? ? ? ? Fortran_77 http://cns-online.org/ ? CNS ? ? package . 1 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 2 # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'HpDprA CTD' 128 ? uM 15N,13C 2 'C-terminal Domain of Helicobacter Pylori RecA-loader DNA Processing Protein A (DprA)' 128 ? uM '[U-13C; U-15N]' 3 'C-terminal Domain of Helicobacter Pylori RecA-loader DNA Processing Protein A (DprA)' 34 ? uM '[U-15N]' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 5 ? ? -103.60 -134.97 2 1 PRO A 11 ? ? -76.98 -73.37 3 1 GLU A 12 ? ? -164.92 116.58 4 1 GLU A 14 ? ? -160.15 -22.69 5 1 SER A 26 ? ? 61.49 64.28 6 1 PHE A 34 ? ? -80.24 -84.99 7 1 LEU A 44 ? ? -81.34 -79.92 8 1 ILE A 50 ? ? -155.80 -34.24 9 1 ASN A 51 ? ? -78.23 -89.26 10 1 HIS A 52 ? ? -141.36 -32.62 11 2 TYR A 5 ? ? -120.79 -132.56 12 2 GLU A 14 ? ? -156.43 -22.68 13 2 SER A 26 ? ? 61.63 63.94 14 2 PHE A 34 ? ? -79.46 -85.14 15 2 LEU A 44 ? ? -76.19 -74.22 16 2 ILE A 50 ? ? -151.70 -35.59 17 2 ASN A 51 ? ? -84.96 -102.63 18 2 HIS A 58 ? ? -129.91 -69.91 19 3 TYR A 5 ? ? -119.31 -127.03 20 3 GLU A 12 ? ? 60.02 71.72 21 3 GLU A 14 ? ? -160.70 -22.89 22 3 SER A 26 ? ? 60.28 63.57 23 3 PHE A 34 ? ? -82.50 -87.23 24 3 LEU A 44 ? ? -79.87 -76.07 25 3 ILE A 50 ? ? -156.14 -37.57 26 3 ASN A 51 ? ? -78.95 -88.67 27 3 HIS A 52 ? ? -140.50 -35.53 28 3 HIS A 58 ? ? -106.08 50.81 29 4 TYR A 5 ? ? -132.15 -137.05 30 4 GLU A 14 ? ? -162.52 -17.37 31 4 SER A 26 ? ? 60.01 62.77 32 4 PHE A 34 ? ? -77.16 -84.51 33 4 LEU A 44 ? ? -79.43 -76.87 34 4 ILE A 50 ? ? -146.73 -42.37 35 4 ASN A 51 ? ? -85.02 -100.21 36 4 HIS A 58 ? ? 69.63 -102.44 37 5 TYR A 5 ? ? -101.99 -127.54 38 5 GLU A 14 ? ? -151.99 -23.41 39 5 SER A 26 ? ? 62.40 65.74 40 5 PHE A 34 ? ? -84.50 -86.93 41 5 LEU A 44 ? ? -79.54 -74.30 42 5 ILE A 50 ? ? -150.13 -41.35 43 5 ASN A 51 ? ? -86.49 -99.20 44 6 LEU A 2 ? ? 68.67 179.19 45 6 TYR A 5 ? ? -106.58 -130.40 46 6 GLU A 14 ? ? -165.04 -23.57 47 6 SER A 26 ? ? 62.15 64.40 48 6 PHE A 34 ? ? -79.48 -84.55 49 6 LEU A 44 ? ? -78.86 -74.99 50 6 ILE A 50 ? ? -152.64 -43.70 51 6 ASN A 51 ? ? -78.66 -75.57 52 6 HIS A 52 ? ? -147.59 -48.87 53 7 TYR A 5 ? ? -111.05 -129.83 54 7 LYS A 8 ? ? -89.96 -97.55 55 7 GLU A 9 ? ? -110.91 -154.18 56 7 GLU A 12 ? ? -102.95 58.23 57 7 GLU A 14 ? ? -156.32 -18.83 58 7 SER A 26 ? ? 61.83 76.01 59 7 PHE A 34 ? ? -81.33 -82.11 60 7 LEU A 44 ? ? -81.33 -77.34 61 7 ILE A 50 ? ? -150.05 -43.34 62 7 ASN A 51 ? ? -80.63 -87.28 63 7 HIS A 52 ? ? -134.09 -32.16 64 8 LEU A 2 ? ? -100.46 -140.15 65 8 TYR A 5 ? ? -126.91 -134.05 66 8 GLU A 9 ? ? -84.54 -94.45 67 8 GLU A 12 ? ? -95.93 30.90 68 8 GLU A 14 ? ? -162.58 -20.85 69 8 SER A 26 ? ? 66.28 79.09 70 8 PHE A 34 ? ? -77.95 -85.24 71 8 ILE A 50 ? ? -154.15 -43.16 72 8 ASN A 51 ? ? -84.03 -84.06 73 8 HIS A 52 ? ? -141.72 -38.91 74 9 LEU A 2 ? ? -94.16 -62.88 75 9 TYR A 5 ? ? -124.94 -128.80 76 9 GLU A 12 ? ? -160.79 112.73 77 9 GLU A 14 ? ? -155.39 -28.40 78 9 SER A 26 ? ? 62.38 62.62 79 9 PHE A 34 ? ? -78.05 -84.99 80 9 LEU A 44 ? ? -79.45 -75.34 81 9 ILE A 50 ? ? -143.84 -40.26 82 9 ASN A 51 ? ? -85.28 -95.62 83 10 TYR A 5 ? ? -111.10 -137.97 84 10 PRO A 11 ? ? -80.89 -125.97 85 10 GLU A 14 ? ? -166.35 -18.89 86 10 SER A 26 ? ? 62.08 63.09 87 10 PHE A 34 ? ? -79.93 -86.15 88 10 LEU A 44 ? ? -80.14 -74.09 89 10 ILE A 50 ? ? -156.59 -39.60 90 10 ASN A 51 ? ? -80.49 -88.14 91 10 HIS A 52 ? ? -134.43 -40.53 92 11 TYR A 5 ? ? -108.35 -129.35 93 11 LYS A 8 ? ? -116.31 -76.05 94 11 GLU A 12 ? ? -119.72 -135.54 95 11 MET A 13 ? ? 57.96 -163.07 96 11 GLU A 14 ? ? -160.27 -31.72 97 11 SER A 26 ? ? 61.97 63.94 98 11 PHE A 34 ? ? -82.42 -81.53 99 11 LEU A 44 ? ? -74.86 -75.85 100 11 ILE A 50 ? ? -153.02 -39.56 101 11 ASN A 51 ? ? -84.07 -102.86 102 12 TYR A 5 ? ? -103.54 -129.41 103 12 PRO A 11 ? ? -76.90 -85.28 104 12 GLU A 12 ? ? -162.38 115.79 105 12 GLU A 14 ? ? -151.37 -19.29 106 12 SER A 26 ? ? 60.86 72.23 107 12 PHE A 34 ? ? -84.30 -86.92 108 12 LEU A 44 ? ? -80.87 -76.35 109 12 ILE A 50 ? ? -151.02 -42.57 110 12 ASN A 51 ? ? -82.75 -86.99 111 13 TYR A 5 ? ? -97.10 -140.67 112 13 LEU A 7 ? ? 52.54 -157.34 113 13 GLU A 12 ? ? -102.87 44.86 114 13 GLU A 14 ? ? -155.61 -22.96 115 13 SER A 26 ? ? 62.91 63.40 116 13 PHE A 34 ? ? -83.10 -87.80 117 13 LEU A 44 ? ? -78.80 -74.20 118 13 ILE A 50 ? ? -150.75 -42.38 119 13 ASN A 51 ? ? -83.88 -91.38 120 14 LEU A 2 ? ? 72.01 -95.87 121 14 TYR A 5 ? ? -101.82 -142.14 122 14 GLU A 12 ? ? -103.21 59.07 123 14 GLU A 14 ? ? -161.21 -24.59 124 14 SER A 26 ? ? 62.15 66.90 125 14 PHE A 34 ? ? -83.72 -87.22 126 14 LEU A 44 ? ? -80.83 -77.85 127 14 ILE A 50 ? ? -152.82 -39.95 128 14 ASN A 51 ? ? -85.30 -100.40 129 15 LYS A 3 ? ? -81.55 -71.38 130 15 ASP A 4 ? ? 72.02 -172.66 131 15 TYR A 5 ? ? -131.21 -132.47 132 15 GLU A 12 ? ? -163.67 100.78 133 15 GLU A 14 ? ? -163.19 -21.48 134 15 SER A 26 ? ? 61.21 62.18 135 15 PHE A 34 ? ? -81.45 -85.69 136 15 LEU A 44 ? ? -79.96 -78.85 137 15 ILE A 50 ? ? -155.30 -39.20 138 15 ASN A 51 ? ? -85.21 -96.41 139 16 TYR A 5 ? ? -115.51 -135.36 140 16 PRO A 11 ? ? -70.03 -81.82 141 16 GLU A 12 ? ? 74.14 104.03 142 16 SER A 26 ? ? 61.29 64.63 143 16 TYR A 31 ? ? -92.71 -64.95 144 16 PHE A 34 ? ? -80.88 -85.36 145 16 LEU A 44 ? ? -80.90 -79.09 146 16 ILE A 50 ? ? -155.93 -41.66 147 16 ASN A 51 ? ? -79.36 -77.96 148 16 HIS A 52 ? ? -142.56 -48.37 149 16 ALA A 57 ? ? -93.13 51.93 150 17 LEU A 2 ? ? -91.12 -119.71 151 17 TYR A 5 ? ? -92.20 -127.94 152 17 LEU A 7 ? ? -39.72 -70.95 153 17 GLU A 12 ? ? -162.10 119.70 154 17 GLU A 14 ? ? -159.02 -19.73 155 17 PHE A 34 ? ? -77.92 -84.54 156 17 LEU A 44 ? ? -79.60 -76.07 157 17 ILE A 50 ? ? -154.30 -36.01 158 17 ASN A 51 ? ? -84.41 -101.24 159 18 TYR A 5 ? ? -97.34 -136.86 160 18 PRO A 11 ? ? -78.69 -90.48 161 18 GLU A 14 ? ? -165.82 -20.58 162 18 SER A 26 ? ? 62.23 64.87 163 18 PHE A 34 ? ? -79.02 -85.30 164 18 LEU A 44 ? ? -79.66 -76.35 165 18 ILE A 50 ? ? -148.26 -44.49 166 18 ASN A 51 ? ? -87.62 -96.82 167 18 HIS A 58 ? ? -83.14 -71.92 168 19 LEU A 2 ? ? -101.60 -120.85 169 19 TYR A 5 ? ? -128.01 -137.07 170 19 LEU A 7 ? ? -38.13 113.18 171 19 LYS A 8 ? ? -154.16 -59.08 172 19 MET A 10 ? ? 26.51 71.03 173 19 PRO A 11 ? ? -78.06 -109.20 174 19 SER A 26 ? ? 61.52 65.15 175 19 PHE A 34 ? ? -82.88 -85.22 176 19 LEU A 44 ? ? -79.77 -74.62 177 19 ILE A 50 ? ? -147.35 -44.48 178 19 ASN A 51 ? ? -87.69 -99.41 179 20 TYR A 5 ? ? -100.09 -127.49 180 20 GLU A 12 ? ? -173.83 125.05 181 20 SER A 26 ? ? 61.61 62.33 182 20 PHE A 34 ? ? -80.02 -81.69 183 20 LEU A 44 ? ? -81.75 -70.70 184 20 ILE A 50 ? ? -157.62 -35.90 185 20 ASN A 51 ? ? -77.65 -84.39 186 20 HIS A 52 ? ? -145.56 -35.09 187 20 HIS A 58 ? ? -106.20 -89.26 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'French National Research Agency' France ANR-10-INSB-05-01 1 'French National Research Agency' France ANR-IAB-2011 2 'French National Research Agency' France ANR-10-BLAN-1328 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #