HEADER DNA BINDING PROTEIN 22-JUN-18 6GW7 TITLE THE CTD OF HPDPRA, A DNA BINDING WINGED HELIX DOMAIN WHICH DO NOT BIND TITLE 2 DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PROTECTING PROTEIN DPRA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: BB415_01075; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS WINGED HELIX, DNA BINDING PROTEIN, DPRA, HELICOBACTER PYLORI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LISBOA,L.CELMA,D.SANCHEZ,M.MARQUIS,J.ANDREANI,R.GUEROIS, AUTHOR 2 F.OCHSENBEIN,D.DURAND,S.MARSIN,P.CUNIASSE,J.P.RADICELLA,S.QUEVILLON- AUTHOR 3 CHERUEL REVDAT 5 14-JUN-23 6GW7 1 REMARK REVDAT 4 18-NOV-20 6GW7 1 REMARK REVDAT 3 29-MAY-19 6GW7 1 JRNL REVDAT 2 08-MAY-19 6GW7 1 REMARK REVDAT 1 24-APR-19 6GW7 0 JRNL AUTH J.LISBOA,L.CELMA,D.SANCHEZ,M.MARQUIS,J.ANDREANI,R.GUEROIS, JRNL AUTH 2 F.OCHSENBEIN,D.DURAND,S.MARSIN,P.CUNIASSE,J.P.RADICELLA, JRNL AUTH 3 S.QUEVILLON-CHERUEL JRNL TITL THE C-TERMINAL DOMAIN OF HPDPRA IS A DNA-BINDING WINGED JRNL TITL 2 HELIX DOMAIN THAT DOES NOT BIND DOUBLE-STRANDED DNA. JRNL REF FEBS J. V. 286 1941 2019 JRNL REFN ISSN 1742-464X JRNL PMID 30771270 JRNL DOI 10.1111/FEBS.14788 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010572. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 300 REMARK 210 PH : 5.6; 5.6; 7.4 REMARK 210 IONIC STRENGTH : 50; 50; 50 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 128 UM 15N,13C HPDPRA CTD, 90% REMARK 210 H2O/10% D2O; 128 UM [U-13C; U- REMARK 210 15N] C-TERMINAL DOMAIN OF REMARK 210 HELICOBACTER PYLORI RECA-LOADER REMARK 210 DNA PROCESSING PROTEIN A (DPRA), REMARK 210 100% D2O; 34 UM [U-15N] C- REMARK 210 TERMINAL DOMAIN OF HELICOBACTER REMARK 210 PYLORI RECA-LOADER DNA REMARK 210 PROCESSING PROTEIN A (DPRA), 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 2D 1H-15N HSQC; 3D 1H-15N REMARK 210 TOCSY; 3D HNCA; 3D HBHA(CO)NH; REMARK 210 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CCPNMR REMARK 210 ANALYSIS, CANDID REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 5 -134.97 -103.60 REMARK 500 1 PRO A 11 -73.37 -76.98 REMARK 500 1 GLU A 12 116.58 -164.92 REMARK 500 1 GLU A 14 -22.69 -160.15 REMARK 500 1 SER A 26 64.28 61.49 REMARK 500 1 PHE A 34 -84.99 -80.24 REMARK 500 1 LEU A 44 -79.92 -81.34 REMARK 500 1 ILE A 50 -34.24 -155.80 REMARK 500 1 ASN A 51 -89.26 -78.23 REMARK 500 1 HIS A 52 -32.62 -141.36 REMARK 500 2 TYR A 5 -132.56 -120.79 REMARK 500 2 GLU A 14 -22.68 -156.43 REMARK 500 2 SER A 26 63.94 61.63 REMARK 500 2 PHE A 34 -85.14 -79.46 REMARK 500 2 LEU A 44 -74.22 -76.19 REMARK 500 2 ILE A 50 -35.59 -151.70 REMARK 500 2 ASN A 51 -102.63 -84.96 REMARK 500 2 HIS A 58 -69.91 -129.91 REMARK 500 3 TYR A 5 -127.03 -119.31 REMARK 500 3 GLU A 12 71.72 60.02 REMARK 500 3 GLU A 14 -22.89 -160.70 REMARK 500 3 SER A 26 63.57 60.28 REMARK 500 3 PHE A 34 -87.23 -82.50 REMARK 500 3 LEU A 44 -76.07 -79.87 REMARK 500 3 ILE A 50 -37.57 -156.14 REMARK 500 3 ASN A 51 -88.67 -78.95 REMARK 500 3 HIS A 52 -35.53 -140.50 REMARK 500 3 HIS A 58 50.81 -106.08 REMARK 500 4 TYR A 5 -137.05 -132.15 REMARK 500 4 GLU A 14 -17.37 -162.52 REMARK 500 4 SER A 26 62.77 60.01 REMARK 500 4 PHE A 34 -84.51 -77.16 REMARK 500 4 LEU A 44 -76.87 -79.43 REMARK 500 4 ILE A 50 -42.37 -146.73 REMARK 500 4 ASN A 51 -100.21 -85.02 REMARK 500 4 HIS A 58 -102.44 69.63 REMARK 500 5 TYR A 5 -127.54 -101.99 REMARK 500 5 GLU A 14 -23.41 -151.99 REMARK 500 5 SER A 26 65.74 62.40 REMARK 500 5 PHE A 34 -86.93 -84.50 REMARK 500 5 LEU A 44 -74.30 -79.54 REMARK 500 5 ILE A 50 -41.35 -150.13 REMARK 500 5 ASN A 51 -99.20 -86.49 REMARK 500 6 LEU A 2 179.19 68.67 REMARK 500 6 TYR A 5 -130.40 -106.58 REMARK 500 6 GLU A 14 -23.57 -165.04 REMARK 500 6 SER A 26 64.40 62.15 REMARK 500 6 PHE A 34 -84.55 -79.48 REMARK 500 6 LEU A 44 -74.99 -78.86 REMARK 500 6 ILE A 50 -43.70 -152.64 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34292 RELATED DB: BMRB REMARK 900 THE CTD OF HPDPRA, A DNA BINDING WINGED HELIX DOMAIN WHICH DO NOT REMARK 900 BIND DSDNA DBREF1 6GW7 A 2 57 UNP A0A2A6XLY0_HELPX DBREF2 6GW7 A A0A2A6XLY0 211 266 SEQADV 6GW7 MET A 1 UNP A0A2A6XLY INITIATING METHIONINE SEQADV 6GW7 HIS A 58 UNP A0A2A6XLY EXPRESSION TAG SEQADV 6GW7 HIS A 59 UNP A0A2A6XLY EXPRESSION TAG SEQRES 1 A 59 MET LEU LYS ASP TYR HIS LEU LYS GLU MET PRO GLU MET SEQRES 2 A 59 GLU ASP GLU PHE LEU GLU TYR CYS ALA LYS ASN PRO SER SEQRES 3 A 59 TYR GLU GLU ALA TYR LEU LYS PHE GLY ASP LYS LEU LEU SEQRES 4 A 59 GLU TYR GLU LEU LEU GLY LYS ILE LYS ARG ILE ASN HIS SEQRES 5 A 59 ILE VAL VAL LEU ALA HIS HIS HELIX 1 AA1 GLU A 14 CYS A 21 1 8 HELIX 2 AA2 SER A 26 LYS A 33 1 8 HELIX 3 AA3 ASP A 36 LEU A 44 1 9 SHEET 1 AA1 2 ILE A 47 ARG A 49 0 SHEET 2 AA1 2 VAL A 54 LEU A 56 -1 O VAL A 55 N LYS A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1