HEADER METAL BINDING PROTEIN 22-JUN-18 6GWB TITLE MOLYBDENUM STORAGE PROTEIN WITHOUT POLYOXOMOLYBDATE CLUSTERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDENUM STORAGE PROTEIN SUBUNIT BETA; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MOSTO SUBUNIT BETA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MOLYBDENUM STORAGE PROTEIN SUBUNIT ALPHA; COMPND 8 CHAIN: A; COMPND 9 SYNONYM: MO STORAGE PROTEIN SUBUNIT ALPHA,MOSTO SUBUNIT ALPHA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII (STRAIN DJ / ATCC BAA- SOURCE 3 1303); SOURCE 4 ORGANISM_TAXID: 322710; SOURCE 5 GENE: MOSB, AVIN_43210; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII (STRAIN DJ / ATCC BAA- SOURCE 10 1303); SOURCE 11 ORGANISM_TAXID: 322710; SOURCE 12 GENE: MOSA, AVIN_43200; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MOLYBDATE STORAGE, POLYOXOMETALATE BINDING, ATP, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.ERMLER REVDAT 2 17-JAN-24 6GWB 1 REMARK REVDAT 1 24-OCT-18 6GWB 0 JRNL AUTH S.BRUNLE,J.POPPE,R.HAIL,U.DEMMER,U.ERMLER JRNL TITL THE MOLYBDENUM STORAGE PROTEIN - A BIONANOLAB FOR CREATING JRNL TITL 2 EXPERIMENTALLY ALTERABLE POLYOXOMOLYBDATE CLUSTERS. JRNL REF J. INORG. BIOCHEM. V. 189 172 2018 JRNL REFN ISSN 1873-3344 JRNL PMID 30278367 JRNL DOI 10.1016/J.JINORGBIO.2018.09.011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 72286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4362 - 5.5521 0.97 3017 153 0.1823 0.1870 REMARK 3 2 5.5521 - 4.4079 0.98 2851 159 0.1468 0.1610 REMARK 3 3 4.4079 - 3.8510 0.99 2819 131 0.1358 0.1503 REMARK 3 4 3.8510 - 3.4991 0.98 2777 158 0.1447 0.1531 REMARK 3 5 3.4991 - 3.2483 0.99 2802 141 0.1590 0.1881 REMARK 3 6 3.2483 - 3.0569 0.97 2720 147 0.1618 0.1889 REMARK 3 7 3.0569 - 2.9038 0.97 2693 163 0.1609 0.1770 REMARK 3 8 2.9038 - 2.7774 0.98 2746 139 0.1655 0.2134 REMARK 3 9 2.7774 - 2.6705 0.99 2735 152 0.1641 0.1922 REMARK 3 10 2.6705 - 2.5784 0.99 2753 143 0.1618 0.1753 REMARK 3 11 2.5784 - 2.4977 0.99 2724 144 0.1592 0.1954 REMARK 3 12 2.4977 - 2.4264 0.99 2753 151 0.1651 0.2071 REMARK 3 13 2.4264 - 2.3625 0.99 2744 123 0.1555 0.1848 REMARK 3 14 2.3625 - 2.3048 0.99 2738 143 0.1545 0.1924 REMARK 3 15 2.3048 - 2.2525 1.00 2730 146 0.1572 0.1951 REMARK 3 16 2.2525 - 2.2045 0.99 2744 154 0.1567 0.2130 REMARK 3 17 2.2045 - 2.1604 0.98 2682 121 0.1628 0.1750 REMARK 3 18 2.1604 - 2.1197 0.97 2677 143 0.1668 0.1994 REMARK 3 19 2.1197 - 2.0818 0.99 2681 147 0.1787 0.2424 REMARK 3 20 2.0818 - 2.0465 0.99 2715 155 0.1799 0.2139 REMARK 3 21 2.0465 - 2.0135 0.99 2707 134 0.1837 0.1826 REMARK 3 22 2.0135 - 1.9825 0.99 2725 118 0.1953 0.2214 REMARK 3 23 1.9825 - 1.9534 0.99 2708 150 0.2008 0.2576 REMARK 3 24 1.9534 - 1.9258 0.99 2726 122 0.2231 0.2313 REMARK 3 25 1.9258 - 1.8998 0.99 2754 128 0.2295 0.2936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3986 REMARK 3 ANGLE : 1.504 5444 REMARK 3 CHIRALITY : 0.114 634 REMARK 3 PLANARITY : 0.009 707 REMARK 3 DIHEDRAL : 7.503 3257 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 41.2679 18.8600 28.4962 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1548 REMARK 3 T33: 0.1841 T12: -0.0222 REMARK 3 T13: -0.0097 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3439 L22: 0.4402 REMARK 3 L33: 0.8814 L12: -0.1156 REMARK 3 L13: -0.1684 L23: 0.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.0447 S13: -0.0991 REMARK 3 S21: -0.0443 S22: -0.0206 S23: 0.1126 REMARK 3 S31: 0.1049 S32: -0.1419 S33: 0.0456 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4F6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 1 M AMMONIUM REMARK 280 PHOSPHATE, 20% GLYCEROL, PH 5.6, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.25000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 117.25000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.25000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 117.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 115.40000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 57.70000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.93933 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 57.70000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 99.93933 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.25000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 115.40000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 117.25000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 117.25000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -378.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 115.40000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 57.70000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.93933 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 0 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ILE A 8 REMARK 465 LYS A 9 REMARK 465 HIS A 10 REMARK 465 VAL A 11 REMARK 465 ILE A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 THR A 19 REMARK 465 LEU A 20 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 ARG A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 83 O HOH B 401 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS B 262 O1 PO4 B 302 8555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 127 CE2 TYR A 127 CD2 0.099 REMARK 500 GLU A 190 CD GLU A 190 OE1 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASN B 198 C - N - CA ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 48 -65.07 -132.17 REMARK 500 ALA B 78 -73.45 -107.54 REMARK 500 LYS B 153 -131.39 51.43 REMARK 500 ARG B 168 -141.95 -115.28 REMARK 500 LYS B 189 -149.94 -123.41 REMARK 500 LYS B 203 -166.67 -109.59 REMARK 500 ASP B 204 19.54 37.42 REMARK 500 LEU B 221 102.55 -59.76 REMARK 500 ASP B 223 -102.01 57.03 REMARK 500 SER B 224 165.40 74.94 REMARK 500 HIS B 262 58.67 -91.57 REMARK 500 HIS A 156 -133.19 51.59 REMARK 500 ARG A 169 -146.61 -103.57 REMARK 500 HIS A 241 -47.86 -131.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 203 ASP B 204 -148.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 190 OE2 REMARK 620 2 PRO A 227 O 101.8 REMARK 620 3 ATP A 301 O1B 74.4 176.0 REMARK 620 4 ATP A 301 O2A 100.8 89.2 92.7 REMARK 620 5 HOH A 405 O 153.4 90.7 92.4 102.8 REMARK 620 6 HOH A 434 O 74.2 74.5 103.0 161.2 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 306 DBREF 6GWB B 0 270 UNP P84253 MOSB_AZOVD 2 270 DBREF 6GWB A 2 276 UNP P84308 MOSA_AZOVD 2 276 SEQRES 1 B 269 ALA ASN SER THR ALA GLU LEU GLU GLU LEU LEU MET GLN SEQRES 2 B 269 ARG SER LEU THR ASP PRO GLN LEU GLN ALA ALA ALA ALA SEQRES 3 B 269 ALA ALA ALA ASP PHE ARG ILE LEU PRO ASP ALA THR VAL SEQRES 4 B 269 ILE LYS ILE GLY GLY GLN SER VAL ILE ASP ARG GLY ARG SEQRES 5 B 269 ALA ALA VAL TYR PRO LEU VAL ASP GLU ILE VAL ALA ALA SEQRES 6 B 269 ARG LYS ASN HIS LYS LEU LEU ILE GLY THR GLY ALA GLY SEQRES 7 B 269 THR ARG ALA ARG HIS LEU TYR SER ILE ALA ALA GLY LEU SEQRES 8 B 269 GLY LEU PRO ALA GLY VAL LEU ALA GLN LEU GLY SER SER SEQRES 9 B 269 VAL ALA ASP GLN ASN ALA ALA MET LEU GLY GLN LEU LEU SEQRES 10 B 269 ALA LYS HIS GLY ILE PRO VAL VAL GLY GLY ALA GLY LEU SEQRES 11 B 269 SER ALA VAL PRO LEU SER LEU ALA GLU VAL ASN ALA VAL SEQRES 12 B 269 VAL PHE SER GLY MET PRO PRO TYR LYS LEU TRP MET ARG SEQRES 13 B 269 PRO ALA ALA GLU GLY VAL ILE PRO PRO TYR ARG THR ASP SEQRES 14 B 269 ALA GLY CYS PHE LEU LEU ALA GLU GLN PHE GLY CYS LYS SEQRES 15 B 269 GLN MET ILE PHE VAL LYS ASP GLU ASP GLY LEU TYR THR SEQRES 16 B 269 ALA ASN PRO LYS THR SER LYS ASP ALA THR PHE ILE PRO SEQRES 17 B 269 ARG ILE SER VAL ASP GLU MET LYS ALA LYS GLY LEU HIS SEQRES 18 B 269 ASP SER ILE LEU GLU PHE PRO VAL LEU ASP LEU LEU GLN SEQRES 19 B 269 SER ALA GLN HIS VAL ARG GLU VAL GLN VAL VAL ASN GLY SEQRES 20 B 269 LEU VAL PRO GLY ASN LEU THR ARG ALA LEU ALA GLY GLU SEQRES 21 B 269 HIS VAL GLY THR ILE ILE THR ALA SER SEQRES 1 A 275 THR ASP THR THR ASN SER ILE LYS HIS VAL ILE SER PRO SEQRES 2 A 275 LEU ALA ARG GLN THR LEU GLN ASP ARG ASP LEU THR ARG SEQRES 3 A 275 PRO VAL ALA GLY LYS ARG PRO ILE ARG LEU LEU PRO TRP SEQRES 4 A 275 LEU GLN VAL VAL LYS ILE GLY GLY ARG VAL MET ASP ARG SEQRES 5 A 275 GLY ALA ASP ALA ILE LEU PRO LEU VAL GLU GLU LEU ARG SEQRES 6 A 275 LYS LEU LEU PRO GLU HIS ARG LEU LEU ILE LEU THR GLY SEQRES 7 A 275 ALA GLY VAL ARG ALA ARG HIS VAL PHE SER VAL GLY LEU SEQRES 8 A 275 ASP LEU GLY LEU PRO VAL GLY SER LEU ALA PRO LEU ALA SEQRES 9 A 275 ALA SER GLU ALA GLY GLN ASN GLY HIS ILE LEU ALA ALA SEQRES 10 A 275 MET LEU ALA SER GLU GLY VAL SER TYR VAL GLU HIS PRO SEQRES 11 A 275 THR VAL ALA ASP GLN LEU ALA ILE HIS LEU SER ALA THR SEQRES 12 A 275 ARG ALA VAL VAL GLY SER ALA PHE PRO PRO TYR HIS HIS SEQRES 13 A 275 HIS GLU PHE PRO GLY SER ARG ILE PRO PRO HIS ARG ALA SEQRES 14 A 275 ASP THR GLY ALA PHE LEU LEU ALA ASP ALA PHE GLY ALA SEQRES 15 A 275 ALA GLY LEU THR ILE VAL GLU ASN VAL ASP GLY ILE TYR SEQRES 16 A 275 THR ALA ASP PRO ASN GLY PRO ASP ARG GLY GLN ALA ARG SEQRES 17 A 275 PHE LEU PRO GLU THR SER ALA THR ASP LEU ALA LYS SER SEQRES 18 A 275 GLU GLY PRO LEU PRO VAL ASP ARG ALA LEU LEU ASP VAL SEQRES 19 A 275 MET ALA THR ALA ARG HIS ILE GLU ARG VAL GLN VAL VAL SEQRES 20 A 275 ASN GLY LEU VAL PRO GLY ARG LEU THR ALA ALA LEU ARG SEQRES 21 A 275 GLY GLU HIS VAL GLY THR LEU ILE ARG THR GLY VAL ARG SEQRES 22 A 275 PRO ALA HET PO4 B 301 5 HET PO4 B 302 5 HET CL B 303 1 HET ATP A 301 31 HET MG A 302 1 HET PO4 A 303 5 HET PO4 A 304 5 HET PO4 A 305 5 HET PO4 A 306 5 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 PO4 6(O4 P 3-) FORMUL 5 CL CL 1- FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 7 MG MG 2+ FORMUL 12 HOH *339(H2 O) HELIX 1 AA1 SER B 4 ARG B 15 1 12 HELIX 2 AA2 ASP B 19 ALA B 28 1 10 HELIX 3 AA3 VAL B 48 ARG B 51 5 4 HELIX 4 AA4 GLY B 52 ARG B 67 1 16 HELIX 5 AA5 GLY B 79 LEU B 92 1 14 HELIX 6 AA6 PRO B 95 ALA B 119 1 25 HELIX 7 AA7 LYS B 120 GLY B 122 5 3 HELIX 8 AA8 ALA B 133 ASN B 142 1 10 HELIX 9 AA9 TYR B 152 MET B 156 5 5 HELIX 10 AB1 ARG B 168 GLY B 181 1 14 HELIX 11 AB2 VAL B 213 LYS B 219 1 7 HELIX 12 AB3 GLU B 227 ALA B 237 1 11 HELIX 13 AB4 GLY B 252 ALA B 259 1 8 HELIX 14 AB5 GLY A 47 ASP A 52 1 6 HELIX 15 AB6 GLY A 54 LEU A 69 1 16 HELIX 16 AB7 GLY A 81 LEU A 94 1 14 HELIX 17 AB8 PRO A 97 ALA A 121 1 25 HELIX 18 AB9 SER A 122 GLY A 124 5 3 HELIX 19 AC1 GLU A 129 GLN A 136 1 8 HELIX 20 AC2 GLN A 136 THR A 144 1 9 HELIX 21 AC3 TYR A 155 GLU A 159 5 5 HELIX 22 AC4 ARG A 169 GLY A 182 1 14 HELIX 23 AC5 ASP A 204 ALA A 208 5 5 HELIX 24 AC6 ALA A 216 SER A 222 1 7 HELIX 25 AC7 ASP A 229 THR A 238 1 10 HELIX 26 AC8 GLY A 254 ARG A 261 1 8 SHEET 1 AA1 8 VAL B 125 VAL B 126 0 SHEET 2 AA1 8 ALA B 143 SER B 147 1 O VAL B 145 N VAL B 126 SHEET 3 AA1 8 LYS B 71 THR B 76 1 N ILE B 74 O VAL B 144 SHEET 4 AA1 8 ALA B 38 ILE B 43 1 N ILE B 41 O GLY B 75 SHEET 5 AA1 8 GLN B 184 LYS B 189 1 O VAL B 188 N LYS B 42 SHEET 6 AA1 8 GLU B 242 ASN B 247 1 O GLN B 244 N PHE B 187 SHEET 7 AA1 8 THR B 265 THR B 268 -1 O THR B 265 N VAL B 245 SHEET 8 AA1 8 ARG B 210 SER B 212 1 N ILE B 211 O THR B 268 SHEET 1 AA2 2 LEU B 194 TYR B 195 0 SHEET 2 AA2 2 PHE B 207 ILE B 208 -1 O ILE B 208 N LEU B 194 SHEET 1 AA3 7 ALA A 146 SER A 150 0 SHEET 2 AA3 7 ARG A 73 THR A 78 1 N ILE A 76 O VAL A 147 SHEET 3 AA3 7 LEU A 41 ILE A 46 1 N VAL A 44 O LEU A 77 SHEET 4 AA3 7 GLY A 185 GLU A 190 1 O VAL A 189 N LYS A 45 SHEET 5 AA3 7 ARG A 244 ASN A 249 1 O VAL A 248 N GLU A 190 SHEET 6 AA3 7 THR A 267 ARG A 270 -1 O THR A 267 N VAL A 247 SHEET 7 AA3 7 GLU A 213 SER A 215 1 N THR A 214 O ARG A 270 SHEET 1 AA4 2 ILE A 195 TYR A 196 0 SHEET 2 AA4 2 PHE A 210 LEU A 211 -1 O LEU A 211 N ILE A 195 LINK OE2 GLU A 190 MG MG A 302 1555 1555 2.46 LINK O PRO A 227 MG MG A 302 1555 1555 2.33 LINK O1B ATP A 301 MG MG A 302 1555 1555 1.91 LINK O2A ATP A 301 MG MG A 302 1555 1555 2.18 LINK MG MG A 302 O HOH A 405 1555 1555 2.08 LINK MG MG A 302 O HOH A 434 1555 1555 2.16 SITE 1 AC1 3 ARG B 210 GLU B 242 HIS B 262 SITE 1 AC2 3 PRO B 209 ARG B 210 HIS B 262 SITE 1 AC3 4 LYS B 120 HIS B 121 HOH B 404 HOH B 454 SITE 1 AC4 29 LYS A 45 GLY A 47 GLY A 48 ARG A 49 SITE 2 AC4 29 GLY A 79 ALA A 80 GLY A 81 ARG A 85 SITE 3 AC4 29 GLU A 190 ASN A 191 VAL A 192 GLY A 194 SITE 4 AC4 29 TYR A 196 ASP A 199 PRO A 200 ASN A 201 SITE 5 AC4 29 PRO A 225 LEU A 226 PRO A 227 MG A 302 SITE 6 AC4 29 HOH A 405 HOH A 409 HOH A 416 HOH A 419 SITE 7 AC4 29 HOH A 441 HOH A 448 HOH A 482 HOH A 538 SITE 8 AC4 29 HOH B 422 SITE 1 AC5 5 GLU A 190 PRO A 227 ATP A 301 HOH A 405 SITE 2 AC5 5 HOH A 434 SITE 1 AC6 7 HIS A 156 HIS A 157 HIS A 158 HOH A 410 SITE 2 AC6 7 HOH A 453 ALA B 129 PRO B 151 SITE 1 AC7 7 HIS A 130 HIS A 156 PO4 A 305 HOH A 406 SITE 2 AC7 7 HOH A 529 HOH A 542 ALA B 129 SITE 1 AC8 7 TYR A 127 GLU A 129 HIS A 130 PO4 A 304 SITE 2 AC8 7 HOH A 407 HOH A 408 HOH A 413 SITE 1 AC9 2 LYS A 32 ARG A 33 CRYST1 115.400 115.400 234.500 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008666 0.005003 0.000000 0.00000 SCALE2 0.000000 0.010006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004264 0.00000