HEADER RNA BINDING PROTEIN 25-JUN-18 6GWJ TITLE HUMAN OSGEP / LAGE3 / GON7 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EKC/KEOPS COMPLEX SUBUNIT LAGE3; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: L ANTIGEN FAMILY MEMBER 3,PROTEIN ESO-3,PROTEIN ITBA2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EKC/KEOPS COMPLEX SUBUNIT GON7; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROBABLE TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE; COMPND 12 CHAIN: K; COMPND 13 SYNONYM: N6-L-THREONYLCARBAMOYLADENINE SYNTHASE,T(6)A SYNTHASE,O- COMPND 14 SIALOGLYCOPROTEIN ENDOPEPTIDASE,HOSGEP,T(6)A37 COMPND 15 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN OSGEP,TRNA COMPND 16 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN OSGEP; COMPND 17 EC: 2.3.1.234; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LAGE3, DXS9879E, ESO3, ITBA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GON7, C14ORF142; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: OSGEP, GCPL1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA, T6A MODIFICATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MISSOURY,D.LIGER,D.DURAND,B.COLLINET,V.H.TILBEURGH REVDAT 4 15-MAY-24 6GWJ 1 REMARK REVDAT 3 20-JAN-21 6GWJ 1 TITLE JRNL LINK REVDAT 2 17-JUL-19 6GWJ 1 AUTHOR JRNL REVDAT 1 03-JUL-19 6GWJ 0 JRNL AUTH C.ARRONDEL,S.MISSOURY,R.SNOEK,J.PATAT,G.MENARA,B.COLLINET, JRNL AUTH 2 D.LIGER,D.DURAND,O.GRIBOUVAL,O.BOYER,L.BUSCARA,G.MARTIN, JRNL AUTH 3 E.MACHUCA,F.NEVO,E.LESCOP,D.A.BRAUN,A.C.BOSCHAT,S.SANQUER, JRNL AUTH 4 I.C.GUERRERA,P.REVY,M.PARISOT,C.MASSON,N.BODDAERT,M.CHARBIT, JRNL AUTH 5 S.DECRAMER,R.NOVO,M.A.MACHER,B.RANCHIN,J.BACCHETTA, JRNL AUTH 6 A.LAURENT,S.COLLARDEAU-FRACHON,A.M.VAN EERDE,F.HILDEBRANDT, JRNL AUTH 7 D.MAGEN,C.ANTIGNAC,H.VAN TILBEURGH,G.MOLLET JRNL TITL DEFECTS IN T 6 A TRNA MODIFICATION DUE TO GON7 AND YRDC JRNL TITL 2 MUTATIONS LEAD TO GALLOWAY-MOWAT SYNDROME. JRNL REF NAT COMMUN V. 10 3967 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31481669 JRNL DOI 10.1038/S41467-019-11951-X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2060 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3005 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2383 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2855 REMARK 3 BIN R VALUE (WORKING SET) : 0.2367 REMARK 3 BIN FREE R VALUE : 0.2675 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86060 REMARK 3 B22 (A**2) : 1.86060 REMARK 3 B33 (A**2) : -3.72130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3679 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4964 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1281 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 82 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 535 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3679 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 473 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4464 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 130.2180 39.5509 19.7292 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: -0.0540 REMARK 3 T33: -0.0994 T12: -0.0045 REMARK 3 T13: 0.0336 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.8310 L22: 1.9695 REMARK 3 L33: 1.7162 L12: 0.0651 REMARK 3 L13: -0.3961 L23: 0.4670 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: -0.3232 S13: -0.2848 REMARK 3 S21: 0.3620 S22: -0.0912 S23: 0.2185 REMARK 3 S31: 0.2122 S32: -0.0999 S33: 0.1519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { D|1 - D|30 } REMARK 3 ORIGIN FOR THE GROUP (A): 130.2340 26.2207 22.1385 REMARK 3 T TENSOR REMARK 3 T11: -0.0277 T22: -0.1055 REMARK 3 T33: 0.0530 T12: 0.0579 REMARK 3 T13: 0.0279 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 2.1410 REMARK 3 L33: 4.6160 L12: 2.8385 REMARK 3 L13: -1.7130 L23: -2.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.1374 S13: -0.1533 REMARK 3 S21: 0.0149 S22: 0.0240 S23: 0.1297 REMARK 3 S31: 0.1932 S32: -0.0422 S33: -0.0384 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|31 - D|50 } REMARK 3 ORIGIN FOR THE GROUP (A): 127.8900 27.5090 13.3645 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: -0.1635 REMARK 3 T33: 0.1203 T12: -0.0239 REMARK 3 T13: 0.0961 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.0253 L22: 0.1293 REMARK 3 L33: 2.6936 L12: 2.7377 REMARK 3 L13: -0.3528 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.0103 S13: -0.1313 REMARK 3 S21: 0.0966 S22: -0.1273 S23: 0.0312 REMARK 3 S31: 0.3317 S32: -0.0698 S33: 0.1316 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { K|* } REMARK 3 ORIGIN FOR THE GROUP (A): 124.8830 61.7593 -0.7235 REMARK 3 T TENSOR REMARK 3 T11: -0.0988 T22: 0.0352 REMARK 3 T33: -0.1459 T12: 0.0003 REMARK 3 T13: -0.0617 T23: 0.0567 REMARK 3 L TENSOR REMARK 3 L11: 2.5972 L22: 0.5933 REMARK 3 L33: 0.5195 L12: -0.0837 REMARK 3 L13: 0.3392 L23: 0.0661 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.5442 S13: 0.2545 REMARK 3 S21: -0.1217 S22: -0.0121 S23: 0.1182 REMARK 3 S31: 0.0053 S32: -0.0596 S33: 0.0617 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200009233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41359 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.308 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.86 REMARK 200 R MERGE FOR SHELL (I) : 1.09700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OF PEG 4000, 0.1 M TRIS HCL PH 8.5 AND REMARK 280 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.67500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.51250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.83750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ASP B 5 REMARK 465 ALA B 6 REMARK 465 ASP B 7 REMARK 465 ALA B 8 REMARK 465 GLY B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 ASP B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 ASP B 16 REMARK 465 GLY B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 GLY B 20 REMARK 465 HIS B 21 REMARK 465 SER B 22 REMARK 465 CYS B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 THR B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 GLY B 35 REMARK 465 GLY B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 PRO B 39 REMARK 465 ALA B 40 REMARK 465 HIS B 41 REMARK 465 ALA B 42 REMARK 465 PRO B 43 REMARK 465 GLY B 44 REMARK 465 PRO B 45 REMARK 465 GLY B 46 REMARK 465 ARG B 47 REMARK 465 ASP B 48 REMARK 465 ALA B 49 REMARK 465 ALA B 50 REMARK 465 SER B 51 REMARK 465 ALA B 52 REMARK 465 ALA B 53 REMARK 465 ARG B 54 REMARK 465 GLY B 55 REMARK 465 SER B 56 REMARK 465 ARG B 57 REMARK 465 MET B 58 REMARK 465 ARG B 59 REMARK 465 CYS D 21 REMARK 465 GLU D 22 REMARK 465 LEU D 51 REMARK 465 VAL D 52 REMARK 465 GLN D 53 REMARK 465 GLY D 54 REMARK 465 GLU D 55 REMARK 465 VAL D 56 REMARK 465 GLN D 57 REMARK 465 HIS D 58 REMARK 465 ARG D 59 REMARK 465 VAL D 60 REMARK 465 ALA D 61 REMARK 465 ALA D 62 REMARK 465 ALA D 63 REMARK 465 PRO D 64 REMARK 465 ASP D 65 REMARK 465 GLU D 66 REMARK 465 ASP D 67 REMARK 465 LEU D 68 REMARK 465 ASP D 69 REMARK 465 GLY D 70 REMARK 465 ASP D 71 REMARK 465 ASP D 72 REMARK 465 GLU D 73 REMARK 465 ASP D 74 REMARK 465 ASP D 75 REMARK 465 ALA D 76 REMARK 465 GLU D 77 REMARK 465 ASP D 78 REMARK 465 GLU D 79 REMARK 465 ASN D 80 REMARK 465 ASN D 81 REMARK 465 ILE D 82 REMARK 465 ASP D 83 REMARK 465 ASN D 84 REMARK 465 ARG D 85 REMARK 465 THR D 86 REMARK 465 ASN D 87 REMARK 465 PHE D 88 REMARK 465 ASP D 89 REMARK 465 GLY D 90 REMARK 465 PRO D 91 REMARK 465 SER D 92 REMARK 465 ALA D 93 REMARK 465 LYS D 94 REMARK 465 ARG D 95 REMARK 465 PRO D 96 REMARK 465 LYS D 97 REMARK 465 THR D 98 REMARK 465 PRO D 99 REMARK 465 SER D 100 REMARK 465 HIS D 101 REMARK 465 HIS D 102 REMARK 465 HIS D 103 REMARK 465 HIS D 104 REMARK 465 HIS D 105 REMARK 465 HIS D 106 REMARK 465 MET K 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 89 65.79 -119.85 REMARK 500 ALA K 11 -143.54 -124.51 REMARK 500 ASN K 27 44.81 -153.54 REMARK 500 ASP K 154 -98.36 -142.11 REMARK 500 THR K 196 67.42 -117.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG K 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP K 294 OD1 REMARK 620 2 HOH K 503 O 137.3 REMARK 620 3 HOH K 555 O 72.6 105.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS K 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG K 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL K 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL K 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL K 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG K 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG K 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG K 408 DBREF 6GWJ B 1 143 UNP Q14657 LAGE3_HUMAN 1 143 DBREF 6GWJ D 1 100 UNP Q9BXV9 GON7_HUMAN 1 100 DBREF 6GWJ K 1 335 UNP Q9NPF4 OSGEP_HUMAN 1 335 SEQADV 6GWJ HIS D 101 UNP Q9BXV9 EXPRESSION TAG SEQADV 6GWJ HIS D 102 UNP Q9BXV9 EXPRESSION TAG SEQADV 6GWJ HIS D 103 UNP Q9BXV9 EXPRESSION TAG SEQADV 6GWJ HIS D 104 UNP Q9BXV9 EXPRESSION TAG SEQADV 6GWJ HIS D 105 UNP Q9BXV9 EXPRESSION TAG SEQADV 6GWJ HIS D 106 UNP Q9BXV9 EXPRESSION TAG SEQRES 1 B 143 MET ARG ASP ALA ASP ALA ASP ALA GLY GLY GLY ALA ASP SEQRES 2 B 143 GLY GLY ASP GLY ARG GLY GLY HIS SER CYS ARG GLY GLY SEQRES 3 B 143 VAL ASP THR ALA ALA ALA PRO ALA GLY GLY ALA PRO PRO SEQRES 4 B 143 ALA HIS ALA PRO GLY PRO GLY ARG ASP ALA ALA SER ALA SEQRES 5 B 143 ALA ARG GLY SER ARG MET ARG PRO HIS ILE PHE THR LEU SEQRES 6 B 143 SER VAL PRO PHE PRO THR PRO LEU GLU ALA GLU ILE ALA SEQRES 7 B 143 HIS GLY SER LEU ALA PRO ASP ALA GLU PRO HIS GLN ARG SEQRES 8 B 143 VAL VAL GLY LYS ASP LEU THR VAL SER GLY ARG ILE LEU SEQRES 9 B 143 VAL VAL ARG TRP LYS ALA GLU ASP CYS ARG LEU LEU ARG SEQRES 10 B 143 ILE SER VAL ILE ASN PHE LEU ASP GLN LEU SER LEU VAL SEQRES 11 B 143 VAL ARG THR MET GLN ARG PHE GLY PRO PRO VAL SER ARG SEQRES 1 D 106 MET GLU LEU LEU GLY GLU TYR VAL GLY GLN GLU GLY LYS SEQRES 2 D 106 PRO GLN LYS LEU ARG VAL SER CYS GLU ALA PRO GLY ASP SEQRES 3 D 106 GLY ASP PRO PHE GLN GLY LEU LEU SER GLY VAL ALA GLN SEQRES 4 D 106 MET LYS ASP MET VAL THR GLU LEU PHE ASP PRO LEU VAL SEQRES 5 D 106 GLN GLY GLU VAL GLN HIS ARG VAL ALA ALA ALA PRO ASP SEQRES 6 D 106 GLU ASP LEU ASP GLY ASP ASP GLU ASP ASP ALA GLU ASP SEQRES 7 D 106 GLU ASN ASN ILE ASP ASN ARG THR ASN PHE ASP GLY PRO SEQRES 8 D 106 SER ALA LYS ARG PRO LYS THR PRO SER HIS HIS HIS HIS SEQRES 9 D 106 HIS HIS SEQRES 1 K 335 MET PRO ALA VAL LEU GLY PHE GLU GLY SER ALA ASN LYS SEQRES 2 K 335 ILE GLY VAL GLY VAL VAL ARG ASP GLY LYS VAL LEU ALA SEQRES 3 K 335 ASN PRO ARG ARG THR TYR VAL THR PRO PRO GLY THR GLY SEQRES 4 K 335 PHE LEU PRO GLY ASP THR ALA ARG HIS HIS ARG ALA VAL SEQRES 5 K 335 ILE LEU ASP LEU LEU GLN GLU ALA LEU THR GLU SER GLY SEQRES 6 K 335 LEU THR SER GLN ASP ILE ASP CYS ILE ALA TYR THR LYS SEQRES 7 K 335 GLY PRO GLY MET GLY ALA PRO LEU VAL SER VAL ALA VAL SEQRES 8 K 335 VAL ALA ARG THR VAL ALA GLN LEU TRP ASN LYS PRO LEU SEQRES 9 K 335 VAL GLY VAL ASN HIS CYS ILE GLY HIS ILE GLU MET GLY SEQRES 10 K 335 ARG LEU ILE THR GLY ALA THR SER PRO THR VAL LEU TYR SEQRES 11 K 335 VAL SER GLY GLY ASN THR GLN VAL ILE ALA TYR SER GLU SEQRES 12 K 335 HIS ARG TYR ARG ILE PHE GLY GLU THR ILE ASP ILE ALA SEQRES 13 K 335 VAL GLY ASN CYS LEU ASP ARG PHE ALA ARG VAL LEU LYS SEQRES 14 K 335 ILE SER ASN ASP PRO SER PRO GLY TYR ASN ILE GLU GLN SEQRES 15 K 335 MET ALA LYS ARG GLY LYS LYS LEU VAL GLU LEU PRO TYR SEQRES 16 K 335 THR VAL LYS GLY MET ASP VAL SER PHE SER GLY ILE LEU SEQRES 17 K 335 SER PHE ILE GLU ASP VAL ALA HIS ARG MET LEU ALA THR SEQRES 18 K 335 GLY GLU CYS THR PRO GLU ASP LEU CYS PHE SER LEU GLN SEQRES 19 K 335 GLU THR VAL PHE ALA MET LEU VAL GLU ILE THR GLU ARG SEQRES 20 K 335 ALA MET ALA HIS CYS GLY SER GLN GLU ALA LEU ILE VAL SEQRES 21 K 335 GLY GLY VAL GLY CYS ASN VAL ARG LEU GLN GLU MET MET SEQRES 22 K 335 ALA THR MET CYS GLN GLU ARG GLY ALA ARG LEU PHE ALA SEQRES 23 K 335 THR ASP GLU ARG PHE CYS ILE ASP ASN GLY ALA MET ILE SEQRES 24 K 335 ALA GLN ALA GLY TRP GLU MET PHE ARG ALA GLY HIS ARG SEQRES 25 K 335 THR PRO LEU SER ASP SER GLY VAL THR GLN ARG TYR ARG SEQRES 26 K 335 THR ASP GLU VAL GLU VAL THR TRP ARG ASP HET GOL B 201 6 HET GOL D 201 6 HET TRS K 401 8 HET MG K 402 1 HET GOL K 403 6 HET GOL K 404 6 HET GOL K 405 6 HET PEG K 406 7 HET PEG K 407 7 HET PEG K 408 7 HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 4 GOL 5(C3 H8 O3) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 MG MG 2+ FORMUL 11 PEG 3(C4 H10 O3) FORMUL 14 HOH *223(H2 O) HELIX 1 AA1 THR B 71 ALA B 83 1 13 HELIX 2 AA2 ASP B 112 GLY B 138 1 27 HELIX 3 AA3 ASP D 28 ASP D 49 1 22 HELIX 4 AA4 LEU K 41 GLY K 65 1 25 HELIX 5 AA5 THR K 67 ILE K 71 5 5 HELIX 6 AA6 MET K 82 ASN K 101 1 20 HELIX 7 AA7 HIS K 109 GLY K 122 1 14 HELIX 8 AA8 ALA K 156 LEU K 168 1 13 HELIX 9 AA9 SER K 175 LYS K 185 1 11 HELIX 10 AB1 PHE K 204 GLY K 222 1 19 HELIX 11 AB2 THR K 225 GLY K 253 1 29 HELIX 12 AB3 GLY K 261 CYS K 265 5 5 HELIX 13 AB4 ASN K 266 GLY K 281 1 16 HELIX 14 AB5 ASN K 295 GLY K 310 1 16 HELIX 15 AB6 PRO K 314 SER K 318 5 5 HELIX 16 AB7 ARG K 325 VAL K 329 5 5 SHEET 1 AA1 5 VAL B 93 SER B 100 0 SHEET 2 AA1 5 ILE B 103 ALA B 110 -1 O VAL B 105 N THR B 98 SHEET 3 AA1 5 HIS B 61 PRO B 68 -1 N PHE B 63 O TRP B 108 SHEET 4 AA1 5 LEU D 3 VAL D 8 -1 O VAL D 8 N ILE B 62 SHEET 5 AA1 5 PRO D 14 VAL D 19 -1 O LEU D 17 N GLY D 5 SHEET 1 AA2 3 LYS K 23 ALA K 26 0 SHEET 2 AA2 3 LYS K 13 ARG K 20 -1 N VAL K 18 O ALA K 26 SHEET 3 AA2 3 ARG K 29 THR K 31 -1 O ARG K 30 N ILE K 14 SHEET 1 AA3 5 LYS K 23 ALA K 26 0 SHEET 2 AA3 5 LYS K 13 ARG K 20 -1 N VAL K 18 O ALA K 26 SHEET 3 AA3 5 ALA K 3 GLU K 8 -1 N VAL K 4 O VAL K 19 SHEET 4 AA3 5 CYS K 73 GLY K 79 1 O ALA K 75 N LEU K 5 SHEET 5 AA3 5 LEU K 104 ASN K 108 1 O VAL K 107 N TYR K 76 SHEET 1 AA4 5 ARG K 145 GLU K 151 0 SHEET 2 AA4 5 THR K 136 SER K 142 -1 N VAL K 138 O GLY K 150 SHEET 3 AA4 5 THR K 127 VAL K 131 -1 N VAL K 128 O ILE K 139 SHEET 4 AA4 5 GLU K 256 VAL K 260 1 O LEU K 258 N LEU K 129 SHEET 5 AA4 5 ARG K 283 ALA K 286 1 O PHE K 285 N ALA K 257 SHEET 1 AA5 2 VAL K 197 LYS K 198 0 SHEET 2 AA5 2 ASP K 201 VAL K 202 -1 O ASP K 201 N LYS K 198 LINK OD1 ASP K 294 MG MG K 402 1555 1555 2.21 LINK MG MG K 402 O HOH K 503 1555 1555 2.20 LINK MG MG K 402 O HOH K 555 1555 1555 2.66 CISPEP 1 GLY B 138 PRO B 139 0 -1.88 CISPEP 2 GLY K 79 PRO K 80 0 -6.08 CISPEP 3 ASP K 173 PRO K 174 0 0.93 SITE 1 AC1 9 PRO B 88 HIS B 89 GLN B 90 ARG B 91 SITE 2 AC1 9 VAL B 92 HOH B 327 SER K 209 PHE K 210 SITE 3 AC1 9 ASP K 213 SITE 1 AC2 7 GLN B 135 ASP D 28 PHE D 30 HOH D 302 SITE 2 AC2 7 HOH D 304 HOH D 305 ARG K 312 SITE 1 AC3 5 ASP D 42 HOH D 301 GLU K 143 HIS K 144 SITE 2 AC3 5 ASP K 335 SITE 1 AC4 7 HIS K 109 HIS K 113 TYR K 130 ASP K 294 SITE 2 AC4 7 HOH K 503 HOH K 528 HOH K 555 SITE 1 AC5 6 ALA B 86 GLY K 83 ALA K 84 VAL K 320 SITE 2 AC5 6 GLN K 322 HOH K 608 SITE 1 AC6 6 ARG B 132 ALA K 51 ARG K 308 HOH K 527 SITE 2 AC6 6 HOH K 534 HOH K 603 SITE 1 AC7 7 ASN K 12 LYS K 13 THR K 31 ASN K 172 SITE 2 AC7 7 PRO K 174 SER K 175 PRO K 176 SITE 1 AC8 6 GLY K 22 LYS K 23 VAL K 24 LEU K 119 SITE 2 AC8 6 ILE K 120 HOH K 533 SITE 1 AC9 2 ARG B 143 GLN K 98 SITE 1 AD1 11 GLN D 31 HOH D 308 LYS K 78 GLY K 106 SITE 2 AD1 11 HIS K 311 ARG K 312 THR K 313 PRO K 314 SITE 3 AD1 11 ASP K 317 TYR K 324 HOH K 611 CRYST1 105.120 105.120 51.350 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019474 0.00000