HEADER PROTEIN FIBRIL 26-JUN-18 6GX5 TITLE NARROW PICK FILAMENT FROM PICK'S DISEASE BRAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN,PAIRED HELICAL FILAMENT-TAU, COMPND 5 PHF-TAU SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 TISSUE: FRONTOTEMPORAL CORTEX KEYWDS TAU PROTEIN, TAU, PICK'S DISEASE, TAUOPATHY, NEURODEGENERATIVE KEYWDS 2 DISEASE, PROTEINOPATHY, AMYLOID, FILAMENT, HELICAL, PICK BODY, KEYWDS 3 FIBRIL, NEURODEGENERATION, MAPT, MICROTUBULE-ASSOCIATED PROTEIN TAU, KEYWDS 4 PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR B.FALCON,W.ZHANG,A.G.MURZIN,G.MURSHUDOV,H.J.GARRINGER,R.VIDAL, AUTHOR 2 R.A.CROWTHER,B.GHETTI,S.H.W.SCHERES,M.GOEDERT REVDAT 4 30-MAR-22 6GX5 1 REMARK REVDAT 3 18-DEC-19 6GX5 1 CRYST1 SCALE REVDAT 2 19-SEP-18 6GX5 1 JRNL REVDAT 1 12-SEP-18 6GX5 0 JRNL AUTH B.FALCON,W.ZHANG,A.G.MURZIN,G.MURSHUDOV,H.J.GARRINGER, JRNL AUTH 2 R.VIDAL,R.A.CROWTHER,B.GHETTI,S.H.W.SCHERES,M.GOEDERT JRNL TITL STRUCTURES OF FILAMENTS FROM PICK'S DISEASE REVEAL A NOVEL JRNL TITL 2 TAU PROTEIN FOLD. JRNL REF NATURE V. 561 137 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 30158706 JRNL DOI 10.1038/S41586-018-0454-Y REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, COOT, RELION, REFMAC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : RECIPROCAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : FOURIER SHELL CORRELATION REMARK 3 OVERALL ANISOTROPIC B VALUE : 57.000 REMARK 3 REMARK 3 FITTING PROCEDURE : FOURIER-SPACE REFINEMENT OF THE COMPLETE REMARK 3 ATOMIC MODEL AGAINST THE NARROW PICK FILAMENT MAP WAS PERFORMED REMARK 3 IN REFMAC. A STACK OF THREE CONSECUTIVE MONOMERS WAS REFINED TO REMARK 3 PRESERVE NEAREST-NEIGHBOUR INTERACTIONS FOR THE MIDDLE CHAIN. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 16097 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6GX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010668. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : TISSUE REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TAU FILAMENTS EXTRACTED FROM REMARK 245 THE FRONTOTEMPORAL CORTEX OF A REMARK 245 PATIENT WITH PICK'S DISEASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 106.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 342 -82.78 -73.47 REMARK 500 ASP A 358 -103.39 58.82 REMARK 500 GLU B 342 -82.76 -73.42 REMARK 500 ASP B 358 -103.40 58.84 REMARK 500 GLU C 342 -82.80 -73.47 REMARK 500 ASP C 358 -103.45 58.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0077 RELATED DB: EMDB REMARK 900 NARROW PICK FILAMENT FROM PICK'S DISEASE BRAIN DBREF 6GX5 A 254 378 UNP P10636 TAU_HUMAN 196 289 DBREF 6GX5 B 254 378 UNP P10636 TAU_HUMAN 196 289 DBREF 6GX5 C 254 378 UNP P10636 TAU_HUMAN 196 289 SEQRES 1 A 94 LYS ASN VAL LYS SER LYS ILE GLY SER THR GLU ASN LEU SEQRES 2 A 94 LYS HIS GLN PRO GLY GLY GLY LYS VAL GLN ILE VAL TYR SEQRES 3 A 94 LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SEQRES 4 A 94 SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN SEQRES 5 A 94 VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG SEQRES 6 A 94 VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS SEQRES 7 A 94 VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS SEQRES 8 A 94 LEU THR PHE SEQRES 1 B 94 LYS ASN VAL LYS SER LYS ILE GLY SER THR GLU ASN LEU SEQRES 2 B 94 LYS HIS GLN PRO GLY GLY GLY LYS VAL GLN ILE VAL TYR SEQRES 3 B 94 LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SEQRES 4 B 94 SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN SEQRES 5 B 94 VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG SEQRES 6 B 94 VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS SEQRES 7 B 94 VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS SEQRES 8 B 94 LEU THR PHE SEQRES 1 C 94 LYS ASN VAL LYS SER LYS ILE GLY SER THR GLU ASN LEU SEQRES 2 C 94 LYS HIS GLN PRO GLY GLY GLY LYS VAL GLN ILE VAL TYR SEQRES 3 C 94 LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SEQRES 4 C 94 SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN SEQRES 5 C 94 VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG SEQRES 6 C 94 VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS SEQRES 7 C 94 VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS SEQRES 8 C 94 LEU THR PHE SHEET 1 AA1 3 ASN B 255 ILE B 260 0 SHEET 2 AA1 3 ASN A 255 ILE A 260 1 N ILE A 260 O LYS B 259 SHEET 3 AA1 3 ASN C 255 ILE C 260 1 O ILE C 260 N LYS A 259 SHEET 1 AA2 3 THR B 263 HIS B 268 0 SHEET 2 AA2 3 THR A 263 HIS A 268 1 N LYS A 267 O HIS B 268 SHEET 3 AA2 3 THR C 263 HIS C 268 1 O LYS C 267 N HIS A 268 SHEET 1 AA3 3 LYS B 274 TYR B 310 0 SHEET 2 AA3 3 LYS A 274 TYR A 310 1 N VAL A 306 O GLN B 307 SHEET 3 AA3 3 LYS C 274 TYR C 310 1 O VAL C 306 N GLN A 307 SHEET 1 AA4 3 VAL B 313 ASP B 314 0 SHEET 2 AA4 3 VAL A 313 ASP A 314 1 N ASP A 314 O VAL B 313 SHEET 3 AA4 3 VAL C 313 ASP C 314 1 O ASP C 314 N VAL A 313 SHEET 1 AA5 3 VAL B 318 LYS B 321 0 SHEET 2 AA5 3 VAL A 318 LYS A 321 1 N SER A 320 O LYS B 321 SHEET 3 AA5 3 VAL C 318 LYS C 321 1 O SER C 320 N LYS A 321 SHEET 1 AA6 3 SER B 324 LEU B 325 0 SHEET 2 AA6 3 SER A 324 LEU A 325 1 N LEU A 325 O SER B 324 SHEET 3 AA6 3 SER C 324 LEU C 325 1 O LEU C 325 N SER A 324 SHEET 1 AA7 3 ILE B 328 HIS B 330 0 SHEET 2 AA7 3 ILE A 328 HIS A 330 1 N ILE A 328 O HIS B 329 SHEET 3 AA7 3 ILE C 328 HIS C 330 1 O ILE C 328 N HIS A 329 SHEET 1 AA8 3 GLN B 336 ILE B 354 0 SHEET 2 AA8 3 GLN A 336 ILE A 354 1 N GLU A 342 O LYS B 343 SHEET 3 AA8 3 GLN C 336 ILE C 354 1 O GLU C 342 N LYS A 343 SHEET 1 AA9 3 ASN B 359 HIS B 362 0 SHEET 2 AA9 3 ASN A 359 HIS A 362 1 N HIS A 362 O THR B 361 SHEET 3 AA9 3 ASN C 359 HIS C 362 1 O HIS C 362 N THR A 361 SHEET 1 AB1 3 LYS B 369 THR B 377 0 SHEET 2 AB1 3 LYS A 369 THR A 377 1 N LEU A 376 O LYS B 375 SHEET 3 AB1 3 LYS C 369 THR C 377 1 O LEU C 376 N LYS A 375 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000