HEADER TRANSCRIPTION 28-JUN-18 6GY3 TITLE CRYSTAL STRUCTURE OF C. GLUTAMICUM AMTR BOUND TO GLNA OPERATOR DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMTR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FIRST 14 RESIDUES CLEAVED OFF DUE TO FACTOR XA COMPND 6 PROTEASE TREATMENT ELECTRON DENSITY ALLOWED TRACING OF RESIDUES 19- COMPND 7 220 IN BOTH PROTOMERS; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*GP*TP*CP*TP*AP*TP*AP*GP*AP*TP*CP*GP*AP*TP*AP*GP*AP*C)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*GP*TP*CP*TP*AP*TP*CP*GP*AP*TP*CP*TP*AP*TP*AP*GP*AP*C)-3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_COMMON: BREVIBACTERIUM SACCHAROLYTICUM; SOURCE 4 ORGANISM_TAXID: 1718; SOURCE 5 GENE: AMTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMALC2; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 14 ORGANISM_TAXID: 1718; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 18 ORGANISM_TAXID: 1718 KEYWDS TRANSCRIPTION REGULATOR, TRANSCRIPTION, TETR FAMILY, NITROGEN KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.SEVVANA,Y.A.MULLER REVDAT 3 17-JAN-24 6GY3 1 REMARK REVDAT 2 18-MAR-20 6GY3 1 REMARK REVDAT 1 10-JUL-19 6GY3 0 JRNL AUTH C.SCHWAB,M.SEVVANA,G.SEIDEL,A.SANDMANN,F.C.GRAU,Y.A.MULLER JRNL TITL THE ROLE OF DNA FLEXIBILITY IN TRANSCRIPTION REGULATOR JRNL TITL 2 AMTR-DNA INTERACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2915 - 4.8660 0.99 2741 145 0.1740 0.1912 REMARK 3 2 4.8660 - 3.8642 0.99 2615 137 0.1827 0.2387 REMARK 3 3 3.8642 - 3.3763 0.99 2569 135 0.2204 0.2912 REMARK 3 4 3.3763 - 3.0678 0.98 2545 132 0.2537 0.3007 REMARK 3 5 3.0678 - 2.8480 1.00 2545 134 0.2686 0.3015 REMARK 3 6 2.8480 - 2.6802 0.95 2448 129 0.2761 0.3431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7917 38.3889 21.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.5828 T22: 0.3901 REMARK 3 T33: 0.3214 T12: 0.0102 REMARK 3 T13: 0.0434 T23: -0.1245 REMARK 3 L TENSOR REMARK 3 L11: 0.2555 L22: 0.1628 REMARK 3 L33: 0.9407 L12: 0.0523 REMARK 3 L13: -0.2941 L23: -0.3568 REMARK 3 S TENSOR REMARK 3 S11: 0.1400 S12: 0.0658 S13: 0.0681 REMARK 3 S21: 0.2357 S22: 0.2523 S23: -0.0478 REMARK 3 S31: -0.4871 S32: -0.3927 S33: 0.0620 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1978 36.9551 -8.0800 REMARK 3 T TENSOR REMARK 3 T11: 0.5865 T22: 0.4969 REMARK 3 T33: 0.3939 T12: 0.0811 REMARK 3 T13: -0.0172 T23: 0.0952 REMARK 3 L TENSOR REMARK 3 L11: 0.0335 L22: 0.0665 REMARK 3 L33: 0.0293 L12: 0.0513 REMARK 3 L13: -0.0111 L23: 0.0190 REMARK 3 S TENSOR REMARK 3 S11: 0.3953 S12: 0.4241 S13: 0.2505 REMARK 3 S21: -0.1734 S22: 0.1784 S23: 0.3582 REMARK 3 S31: -0.1004 S32: 0.2728 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6849 20.1407 21.9917 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.4519 REMARK 3 T33: 0.3862 T12: 0.0518 REMARK 3 T13: 0.0873 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.1001 L22: 0.1423 REMARK 3 L33: 0.0483 L12: 0.0752 REMARK 3 L13: -0.0286 L23: 0.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: -0.1337 S13: -0.0413 REMARK 3 S21: 0.5713 S22: -0.3036 S23: 0.5568 REMARK 3 S31: 0.0788 S32: 0.2104 S33: -0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1075 28.9971 27.1467 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.4916 REMARK 3 T33: 0.3622 T12: 0.0358 REMARK 3 T13: -0.0794 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.0251 L22: 0.0326 REMARK 3 L33: 0.0203 L12: 0.0134 REMARK 3 L13: -0.0066 L23: -0.0248 REMARK 3 S TENSOR REMARK 3 S11: -0.2387 S12: 0.3099 S13: 0.2990 REMARK 3 S21: 0.5788 S22: -0.0003 S23: -0.0498 REMARK 3 S31: 0.3852 S32: -0.2828 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9625 7.7513 25.9812 REMARK 3 T TENSOR REMARK 3 T11: 0.5804 T22: 0.5038 REMARK 3 T33: 0.4983 T12: 0.1136 REMARK 3 T13: -0.1067 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.1172 L22: 0.0112 REMARK 3 L33: 0.0303 L12: 0.0355 REMARK 3 L13: 0.0679 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.3164 S13: -0.0367 REMARK 3 S21: 0.1198 S22: -0.0518 S23: -0.2266 REMARK 3 S31: 0.2321 S32: 0.0769 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7798 -4.1850 24.1274 REMARK 3 T TENSOR REMARK 3 T11: 0.9631 T22: 0.4926 REMARK 3 T33: 0.4970 T12: 0.0697 REMARK 3 T13: 0.1112 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 0.1584 L22: 0.1023 REMARK 3 L33: 0.0598 L12: 0.0870 REMARK 3 L13: 0.0129 L23: 0.0482 REMARK 3 S TENSOR REMARK 3 S11: -0.2150 S12: -0.2592 S13: -0.2850 REMARK 3 S21: 0.3297 S22: 0.1166 S23: 0.1884 REMARK 3 S31: 0.6581 S32: 0.1416 S33: -0.0580 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6970 13.8594 13.9732 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.5709 REMARK 3 T33: 0.4601 T12: -0.0302 REMARK 3 T13: -0.0305 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.2138 L22: 0.0026 REMARK 3 L33: 0.0017 L12: 0.0232 REMARK 3 L13: 0.0182 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.2055 S13: -0.2588 REMARK 3 S21: -0.0454 S22: 0.1361 S23: -0.1054 REMARK 3 S31: -0.0302 S32: 0.3059 S33: 0.0021 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7259 -1.8526 18.7329 REMARK 3 T TENSOR REMARK 3 T11: 0.7232 T22: 0.6191 REMARK 3 T33: 0.7499 T12: 0.1476 REMARK 3 T13: -0.1635 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.0411 L22: 0.0150 REMARK 3 L33: 0.0710 L12: -0.0043 REMARK 3 L13: 0.0164 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: 0.1198 S13: -0.1499 REMARK 3 S21: -0.0736 S22: 0.0542 S23: -0.0627 REMARK 3 S31: 0.1042 S32: 0.2600 S33: 0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3505 -6.3259 12.5593 REMARK 3 T TENSOR REMARK 3 T11: 0.5629 T22: 0.3031 REMARK 3 T33: 0.5085 T12: 0.0295 REMARK 3 T13: 0.1288 T23: -0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.0443 L22: 0.1886 REMARK 3 L33: 0.1198 L12: 0.0308 REMARK 3 L13: 0.0559 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.4902 S12: -0.2442 S13: 0.1477 REMARK 3 S21: 0.4379 S22: 0.0064 S23: -0.0874 REMARK 3 S31: 0.1885 S32: -0.0076 S33: 0.0160 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4830 -5.3997 22.3712 REMARK 3 T TENSOR REMARK 3 T11: 0.6973 T22: 0.3003 REMARK 3 T33: 0.5527 T12: -0.1712 REMARK 3 T13: 0.4050 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 0.1620 L22: 0.0761 REMARK 3 L33: 0.0766 L12: 0.1062 REMARK 3 L13: -0.0224 L23: 0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: -0.1630 S13: -0.3832 REMARK 3 S21: 0.0800 S22: -0.0377 S23: 0.0116 REMARK 3 S31: 0.3978 S32: -0.0418 S33: -0.5561 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9082 -20.4530 20.8193 REMARK 3 T TENSOR REMARK 3 T11: 1.2272 T22: 0.4815 REMARK 3 T33: 0.7366 T12: 0.0664 REMARK 3 T13: 0.3485 T23: 0.2866 REMARK 3 L TENSOR REMARK 3 L11: 0.0008 L22: 0.0002 REMARK 3 L33: -0.0001 L12: -0.0000 REMARK 3 L13: 0.0005 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.1070 S13: -0.0140 REMARK 3 S21: 0.2635 S22: -0.0445 S23: 0.1536 REMARK 3 S31: -0.0306 S32: -0.0697 S33: -0.1768 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2164 -11.7239 33.3309 REMARK 3 T TENSOR REMARK 3 T11: 1.6609 T22: 0.7604 REMARK 3 T33: 0.7817 T12: 0.0679 REMARK 3 T13: 0.2864 T23: 0.2908 REMARK 3 L TENSOR REMARK 3 L11: 1.0283 L22: 0.1562 REMARK 3 L33: 0.3249 L12: 0.0443 REMARK 3 L13: 0.2796 L23: 0.2087 REMARK 3 S TENSOR REMARK 3 S11: -0.0761 S12: -0.2620 S13: -0.5591 REMARK 3 S21: -0.1360 S22: 0.0721 S23: 0.0803 REMARK 3 S31: 0.1485 S32: 0.4118 S33: 0.0969 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7960 21.9456 -6.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.3748 REMARK 3 T33: 0.2652 T12: 0.0132 REMARK 3 T13: -0.0602 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.0824 L22: 0.5996 REMARK 3 L33: 0.2480 L12: -0.1458 REMARK 3 L13: -0.1379 L23: 0.2678 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: 0.1502 S13: 0.2027 REMARK 3 S21: -0.2148 S22: -0.2723 S23: -0.1769 REMARK 3 S31: -0.2674 S32: 0.0373 S33: -0.0145 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7123 5.7887 -7.0367 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.4685 REMARK 3 T33: 0.6397 T12: -0.0384 REMARK 3 T13: -0.0594 T23: -0.1849 REMARK 3 L TENSOR REMARK 3 L11: 0.1127 L22: 0.3675 REMARK 3 L33: 0.3922 L12: 0.1991 REMARK 3 L13: -0.1480 L23: -0.2339 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: 0.5232 S13: -0.3407 REMARK 3 S21: -0.2173 S22: 0.0375 S23: 0.0547 REMARK 3 S31: 0.2729 S32: -0.1896 S33: -0.2992 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0485 -5.6072 -1.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2785 REMARK 3 T33: 0.5389 T12: -0.1086 REMARK 3 T13: 0.0712 T23: -0.1771 REMARK 3 L TENSOR REMARK 3 L11: 0.7126 L22: 1.2815 REMARK 3 L33: 1.4398 L12: 0.2058 REMARK 3 L13: 0.4158 L23: -1.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.2779 S13: -0.1661 REMARK 3 S21: -0.3192 S22: -0.2519 S23: 0.3402 REMARK 3 S31: 0.6019 S32: -0.0754 S33: -1.2712 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7316 37.4666 -4.6294 REMARK 3 T TENSOR REMARK 3 T11: 0.4646 T22: 0.4868 REMARK 3 T33: 0.4192 T12: -0.0159 REMARK 3 T13: 0.1375 T23: 0.1347 REMARK 3 L TENSOR REMARK 3 L11: 0.1350 L22: 0.1675 REMARK 3 L33: 0.0863 L12: -0.0233 REMARK 3 L13: 0.0178 L23: -0.1324 REMARK 3 S TENSOR REMARK 3 S11: 0.1137 S12: -0.2049 S13: -0.0157 REMARK 3 S21: -0.3425 S22: 0.2082 S23: 0.1486 REMARK 3 S31: -0.1443 S32: 0.1448 S33: -0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4750 38.1804 24.8528 REMARK 3 T TENSOR REMARK 3 T11: 0.6961 T22: 0.5031 REMARK 3 T33: 0.3398 T12: -0.0430 REMARK 3 T13: 0.0021 T23: -0.0752 REMARK 3 L TENSOR REMARK 3 L11: 0.0312 L22: 0.0169 REMARK 3 L33: 0.0159 L12: 0.0072 REMARK 3 L13: -0.0271 L23: 0.0125 REMARK 3 S TENSOR REMARK 3 S11: 0.1788 S12: 0.0377 S13: 0.2418 REMARK 3 S21: -0.0673 S22: 0.1657 S23: -0.2558 REMARK 3 S31: -0.4854 S32: -0.1210 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1230 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN C AND (RESID 1 THROUGH 6 OR RESID REMARK 3 8 THROUGH 11 OR RESID 13 THROUGH 18)) REMARK 3 SELECTION : (CHAIN D AND (RESID 1 THROUGH 6 OR RESID REMARK 3 8 THROUGH 11 OR RESID 13 THROUGH 18)) REMARK 3 ATOM PAIRS NUMBER : 300 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 33.289 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.964 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRIS REMARK 280 -HCL, PH 8.5, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.66000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 51 -168.55 -119.51 REMARK 500 PHE A 128 40.04 -75.37 REMARK 500 ASN A 172 45.98 -147.23 REMARK 500 PHE B 128 40.45 -72.79 REMARK 500 ASN B 172 46.27 -147.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GY3 A 19 220 UNP H7C699 H7C699_CORGT 19 220 DBREF 6GY3 B 19 220 UNP H7C699 H7C699_CORGT 19 220 DBREF 6GY3 C 1 18 PDB 6GY3 6GY3 1 18 DBREF 6GY3 D 1 18 PDB 6GY3 6GY3 1 18 SEQRES 1 A 202 ASN PRO ARG GLU GLU ILE LEU ASP ALA SER ALA GLU LEU SEQRES 2 A 202 PHE THR ARG GLN GLY PHE ALA THR THR SER THR HIS GLN SEQRES 3 A 202 ILE ALA ASP ALA VAL GLY ILE ARG GLN ALA SER LEU TYR SEQRES 4 A 202 TYR HIS PHE PRO SER LYS THR GLU ILE PHE LEU THR LEU SEQRES 5 A 202 LEU LYS SER THR VAL GLU PRO SER THR VAL LEU ALA GLU SEQRES 6 A 202 ASP LEU SER THR LEU ASP ALA GLY PRO GLU MET ARG LEU SEQRES 7 A 202 TRP ALA ILE VAL ALA SER GLU VAL ARG LEU LEU LEU SER SEQRES 8 A 202 THR LYS TRP ASN VAL GLY ARG LEU TYR GLN LEU PRO ILE SEQRES 9 A 202 VAL GLY SER GLU GLU PHE ALA GLU TYR HIS SER GLN ARG SEQRES 10 A 202 GLU ALA LEU THR ASN VAL PHE ARG ASP LEU ALA THR GLU SEQRES 11 A 202 ILE VAL GLY ASP ASP PRO ARG ALA GLU LEU PRO PHE HIS SEQRES 12 A 202 ILE THR MET SER VAL ILE GLU MET ARG ARG ASN ASP GLY SEQRES 13 A 202 LYS ILE PRO SER PRO LEU SER ALA ASP SER LEU PRO GLU SEQRES 14 A 202 THR ALA ILE MET LEU ALA ASP ALA SER LEU ALA VAL LEU SEQRES 15 A 202 GLY ALA PRO LEU PRO ALA ASP ARG VAL GLU LYS THR LEU SEQRES 16 A 202 GLU LEU ILE LYS GLN ALA ASP SEQRES 1 B 202 ASN PRO ARG GLU GLU ILE LEU ASP ALA SER ALA GLU LEU SEQRES 2 B 202 PHE THR ARG GLN GLY PHE ALA THR THR SER THR HIS GLN SEQRES 3 B 202 ILE ALA ASP ALA VAL GLY ILE ARG GLN ALA SER LEU TYR SEQRES 4 B 202 TYR HIS PHE PRO SER LYS THR GLU ILE PHE LEU THR LEU SEQRES 5 B 202 LEU LYS SER THR VAL GLU PRO SER THR VAL LEU ALA GLU SEQRES 6 B 202 ASP LEU SER THR LEU ASP ALA GLY PRO GLU MET ARG LEU SEQRES 7 B 202 TRP ALA ILE VAL ALA SER GLU VAL ARG LEU LEU LEU SER SEQRES 8 B 202 THR LYS TRP ASN VAL GLY ARG LEU TYR GLN LEU PRO ILE SEQRES 9 B 202 VAL GLY SER GLU GLU PHE ALA GLU TYR HIS SER GLN ARG SEQRES 10 B 202 GLU ALA LEU THR ASN VAL PHE ARG ASP LEU ALA THR GLU SEQRES 11 B 202 ILE VAL GLY ASP ASP PRO ARG ALA GLU LEU PRO PHE HIS SEQRES 12 B 202 ILE THR MET SER VAL ILE GLU MET ARG ARG ASN ASP GLY SEQRES 13 B 202 LYS ILE PRO SER PRO LEU SER ALA ASP SER LEU PRO GLU SEQRES 14 B 202 THR ALA ILE MET LEU ALA ASP ALA SER LEU ALA VAL LEU SEQRES 15 B 202 GLY ALA PRO LEU PRO ALA ASP ARG VAL GLU LYS THR LEU SEQRES 16 B 202 GLU LEU ILE LYS GLN ALA ASP SEQRES 1 C 18 DG DT DC DT DA DT DA DG DA DT DC DG DA SEQRES 2 C 18 DT DA DG DA DC SEQRES 1 D 18 DG DT DC DT DA DT DC DG DA DT DC DT DA SEQRES 2 D 18 DT DA DG DA DC HELIX 1 AA1 ASN A 19 GLY A 36 1 18 HELIX 2 AA2 SER A 41 GLY A 50 1 10 HELIX 3 AA3 ARG A 52 ALA A 54 5 3 HELIX 4 AA4 SER A 55 PHE A 60 1 6 HELIX 5 AA5 SER A 62 LEU A 88 1 27 HELIX 6 AA6 GLY A 91 LEU A 108 1 18 HELIX 7 AA7 ASN A 113 TYR A 118 5 6 HELIX 8 AA8 LEU A 120 SER A 125 5 6 HELIX 9 AA9 PHE A 128 GLY A 151 1 24 HELIX 10 AB1 ASP A 153 ALA A 156 5 4 HELIX 11 AB2 GLU A 157 SER A 165 1 9 HELIX 12 AB3 VAL A 166 MET A 169 5 4 HELIX 13 AB4 PRO A 186 LEU A 200 1 15 HELIX 14 AB5 ASP A 207 ALA A 219 1 13 HELIX 15 AB6 PRO B 20 GLY B 36 1 17 HELIX 16 AB7 SER B 41 GLY B 50 1 10 HELIX 17 AB8 ARG B 52 ALA B 54 5 3 HELIX 18 AB9 SER B 55 PHE B 60 1 6 HELIX 19 AC1 SER B 62 LEU B 88 1 27 HELIX 20 AC2 GLY B 91 LEU B 108 1 18 HELIX 21 AC3 ASN B 113 TYR B 118 5 6 HELIX 22 AC4 LEU B 120 SER B 125 5 6 HELIX 23 AC5 PHE B 128 GLY B 151 1 24 HELIX 24 AC6 ASP B 153 ALA B 156 5 4 HELIX 25 AC7 GLU B 157 SER B 165 1 9 HELIX 26 AC8 VAL B 166 MET B 169 5 4 HELIX 27 AC9 PRO B 186 LEU B 200 1 15 HELIX 28 AD1 ASP B 207 ALA B 219 1 13 CRYST1 63.320 76.150 117.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008518 0.00000