HEADER TRANSPORT PROTEIN 29-JUN-18 6GYE TITLE CRYSTAL STRUCTURE OF NADR PROTEIN IN COMPLEX WITH NR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE NADR FAMILY / COMPND 3 RIBOSYLNICOTINAMIDE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS CREMORIS; SOURCE 4 ORGANISM_TAXID: 1359; SOURCE 5 GENE: NCDO763_1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1211845 KEYWDS VITAMIN TRANSPORT, PHOSPHORYLATION, NAD+, NADR, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SINGH,A.STETSENKO,M.JAEHME,A.GUSKOV,D.J.SLOTBOOM REVDAT 3 17-JAN-24 6GYE 1 REMARK REVDAT 2 22-JUL-20 6GYE 1 JRNL REVDAT 1 10-JUL-19 6GYE 0 JRNL AUTH A.STETSENKO,R.SINGH,M.JAEHME,A.GUSKOV,D.J.SLOTBOOM JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF NADR JRNL TITL 2 FROMLACTOCOCCUS LACTIS. JRNL REF MOLECULES V. 25 2020 JRNL REFN ESSN 1420-3049 JRNL PMID 32331317 JRNL DOI 10.3390/MOLECULES25081940 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3150: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3729 - 6.7192 1.00 2963 155 0.1888 0.2102 REMARK 3 2 6.7192 - 5.3355 1.00 2759 146 0.1907 0.2122 REMARK 3 3 5.3355 - 4.6618 1.00 2761 145 0.1466 0.1667 REMARK 3 4 4.6618 - 4.2358 1.00 2709 143 0.1261 0.1675 REMARK 3 5 4.2358 - 3.9324 1.00 2699 142 0.1386 0.1604 REMARK 3 6 3.9324 - 3.7006 1.00 2709 142 0.1431 0.1871 REMARK 3 7 3.7006 - 3.5154 1.00 2674 141 0.1543 0.1861 REMARK 3 8 3.5154 - 3.3624 1.00 2685 141 0.1583 0.1933 REMARK 3 9 3.3624 - 3.2330 1.00 2666 141 0.1741 0.2107 REMARK 3 10 3.2330 - 3.1214 1.00 2659 140 0.1769 0.2653 REMARK 3 11 3.1214 - 3.0239 1.00 2666 140 0.1814 0.2000 REMARK 3 12 3.0239 - 2.9374 1.00 2658 140 0.1860 0.2456 REMARK 3 13 2.9374 - 2.8601 1.00 2645 139 0.1991 0.2398 REMARK 3 14 2.8601 - 2.7903 1.00 2655 140 0.2068 0.2543 REMARK 3 15 2.7903 - 2.7269 1.00 2659 140 0.2265 0.2694 REMARK 3 16 2.7269 - 2.6689 1.00 2622 138 0.2368 0.3011 REMARK 3 17 2.6689 - 2.6155 1.00 2644 139 0.2460 0.2850 REMARK 3 18 2.6155 - 2.5662 1.00 2653 139 0.2542 0.2893 REMARK 3 19 2.5662 - 2.5203 1.00 2623 139 0.2653 0.3130 REMARK 3 20 2.5203 - 2.4776 1.00 2647 139 0.2733 0.2762 REMARK 3 21 2.4776 - 2.4376 1.00 2647 139 0.2691 0.2942 REMARK 3 22 2.4376 - 2.4001 1.00 2613 138 0.3036 0.3322 REMARK 3 23 2.4001 - 2.3648 1.00 2661 140 0.3100 0.2963 REMARK 3 24 2.3648 - 2.3315 1.00 2612 137 0.3330 0.3308 REMARK 3 25 2.3315 - 2.3000 1.00 2630 139 0.3449 0.3795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6318 REMARK 3 ANGLE : 0.958 8575 REMARK 3 CHIRALITY : 0.057 900 REMARK 3 PLANARITY : 0.006 1132 REMARK 3 DIHEDRAL : 16.655 3754 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0003 34.1448 27.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.6327 T22: 0.6654 REMARK 3 T33: 0.5218 T12: -0.1835 REMARK 3 T13: -0.2180 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 1.2783 L22: 4.6982 REMARK 3 L33: 0.9201 L12: -0.4902 REMARK 3 L13: 0.5148 L23: -1.3451 REMARK 3 S TENSOR REMARK 3 S11: 0.2269 S12: -0.3135 S13: -0.5019 REMARK 3 S21: 0.2621 S22: 0.0827 S23: 0.2285 REMARK 3 S31: 0.2696 S32: -0.3034 S33: -0.3092 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3384 64.9442 11.2048 REMARK 3 T TENSOR REMARK 3 T11: 0.4406 T22: 0.6146 REMARK 3 T33: 0.4468 T12: -0.0306 REMARK 3 T13: -0.0595 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 2.5644 L22: 1.7100 REMARK 3 L33: 3.0032 L12: -1.5028 REMARK 3 L13: 2.1520 L23: -0.9080 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: -0.2578 S13: 0.0126 REMARK 3 S21: -0.0761 S22: 0.1030 S23: 0.2148 REMARK 3 S31: -0.0405 S32: -0.5101 S33: -0.1564 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4215 70.9704 23.5527 REMARK 3 T TENSOR REMARK 3 T11: 0.5033 T22: 0.7163 REMARK 3 T33: 0.4519 T12: 0.0381 REMARK 3 T13: 0.0504 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.9215 L22: 2.3888 REMARK 3 L33: 3.4908 L12: 0.9988 REMARK 3 L13: 1.2535 L23: 0.7258 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.7724 S13: 0.5682 REMARK 3 S21: 0.1431 S22: -0.0062 S23: 0.3394 REMARK 3 S31: -0.3249 S32: -0.8101 S33: 0.0832 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5886 70.7650 15.7837 REMARK 3 T TENSOR REMARK 3 T11: 0.4011 T22: 0.5003 REMARK 3 T33: 0.4324 T12: -0.0123 REMARK 3 T13: -0.0911 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.8151 L22: 3.6576 REMARK 3 L33: 1.4262 L12: 0.6248 REMARK 3 L13: 0.1601 L23: 1.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.0434 S13: 0.1078 REMARK 3 S21: -0.0925 S22: 0.0981 S23: -0.0965 REMARK 3 S31: -0.1253 S32: 0.1117 S33: -0.1755 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2838 39.7061 -2.6767 REMARK 3 T TENSOR REMARK 3 T11: 0.5638 T22: 0.5235 REMARK 3 T33: 0.4831 T12: 0.0493 REMARK 3 T13: -0.1938 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.4070 L22: 1.6204 REMARK 3 L33: 4.1350 L12: -0.2751 REMARK 3 L13: 0.5273 L23: 1.5524 REMARK 3 S TENSOR REMARK 3 S11: 0.2683 S12: 0.3974 S13: -0.3333 REMARK 3 S21: -0.1904 S22: -0.1239 S23: 0.0436 REMARK 3 S31: 0.1920 S32: 0.1123 S33: -0.0621 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7651 34.5501 -1.1311 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.6308 REMARK 3 T33: 0.5974 T12: 0.1195 REMARK 3 T13: -0.1792 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 3.0158 L22: 3.6760 REMARK 3 L33: 7.3809 L12: -1.2359 REMARK 3 L13: -1.6144 L23: -0.5713 REMARK 3 S TENSOR REMARK 3 S11: 0.1198 S12: 0.3713 S13: -0.2976 REMARK 3 S21: -0.0535 S22: 0.0088 S23: -0.2412 REMARK 3 S31: 0.8228 S32: 0.7158 S33: -0.0233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6049 29.5482 20.4409 REMARK 3 T TENSOR REMARK 3 T11: 0.8377 T22: 0.7400 REMARK 3 T33: 0.7919 T12: 0.0118 REMARK 3 T13: -0.4291 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 8.9458 L22: 4.3472 REMARK 3 L33: 2.1586 L12: 1.1421 REMARK 3 L13: -3.0662 L23: 1.2975 REMARK 3 S TENSOR REMARK 3 S11: -0.4384 S12: -0.6759 S13: -1.1099 REMARK 3 S21: 0.7605 S22: -0.0201 S23: -0.6208 REMARK 3 S31: 0.2073 S32: 0.6346 S33: 0.0287 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 2.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LW7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M (NH4)2SO4, 100MM NA CITRATE, 10MM REMARK 280 MGCL2 AND 10% GLUCOSE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.51667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.51667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 131.03333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.51667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 131.03333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.51667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 131.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 GLU A 305 REMARK 465 TYR A 306 REMARK 465 ILE A 307 REMARK 465 ASP A 308 REMARK 465 ASP A 309 REMARK 465 GLY A 310 REMARK 465 GLY A 347 REMARK 465 ASP A 348 REMARK 465 HIS A 349 REMARK 465 ARG A 350 REMARK 465 ASP A 351 REMARK 465 GLN A 352 REMARK 465 GLU A 353 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 SER B 7 REMARK 465 GLU B 305 REMARK 465 TYR B 306 REMARK 465 ILE B 307 REMARK 465 ASP B 308 REMARK 465 ASP B 309 REMARK 465 GLY B 310 REMARK 465 TYR B 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 B 403 O HOH B 501 2.13 REMARK 500 O2 SO4 B 403 O HOH B 502 2.16 REMARK 500 O HOH B 515 O HOH B 621 2.18 REMARK 500 O HOH B 514 O HOH B 635 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 37.93 -84.00 REMARK 500 PRO A 94 -50.45 3.76 REMARK 500 ASN A 163 81.08 -150.75 REMARK 500 THR A 260 171.90 69.49 REMARK 500 HIS A 313 99.21 -64.69 REMARK 500 ASP A 344 72.58 -102.37 REMARK 500 ASP A 345 -161.32 -120.74 REMARK 500 THR B 260 173.10 69.43 REMARK 500 HIS B 313 99.85 -66.61 REMARK 500 ASP B 344 68.98 -105.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NNR A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NNR B 407 DBREF1 6GYE A 1 379 UNP A0A165F602_LACLC DBREF2 6GYE A A0A165F602 1 379 DBREF1 6GYE B 1 379 UNP A0A165F602_LACLC DBREF2 6GYE B A0A165F602 1 379 SEQRES 1 A 379 MET LEU THR ASN ASN ILE SER LYS SER LYS LEU SER GLY SEQRES 2 A 379 LYS ASN ILE GLY ILE TYR PHE GLY THR PHE ALA PRO LEU SEQRES 3 A 379 HIS THR GLY HIS GLN GLN GLN ILE TYR LYS CYS ALA SER SEQRES 4 A 379 LEU ASN ASP GLY VAL LEU LEU VAL VAL SER GLY TYR ASP SEQRES 5 A 379 ASN ASP ARG GLY ALA GLN ILE GLY LEU PRO LEU GLU LYS SEQRES 6 A 379 ARG PHE ARG TYR LEU ARG GLU ALA PHE ASN ASP GLU GLU SEQRES 7 A 379 ASN ILE LYS VAL SER MET LEU ASN GLU ASN ASP LEU PRO SEQRES 8 A 379 GLU MET PRO ASN GLY TRP ASP GLU TRP ALA ASN ARG LEU SEQRES 9 A 379 PHE GLU LEU ILE HIS HIS ASN THR LEU GLU ASN ASP LEU SEQRES 10 A 379 SER VAL THR PHE TYR VAL GLY GLU LEU GLU TYR ALA ALA SEQRES 11 A 379 GLU LEU LYS LYS ARG PHE PRO ALA ASP GLY ASN GLN TYR SEQRES 12 A 379 ALA VAL GLU ILE ALA ASP ARG HIS ASP ILE SER LEU SER SEQRES 13 A 379 ALA THR GLN ILE ARG GLU ASN PRO GLN GLU HIS TRP THR SEQRES 14 A 379 HIS ILE ASN ARG VAL PHE ARG ARG HIS PHE SER LYS VAL SEQRES 15 A 379 VAL THR VAL MET GLY SER ALA SER THR GLY LYS THR THR SEQRES 16 A 379 LEU VAL ARG ARG LEU ALA ARG SER ILE ASN ALA PRO PHE SEQRES 17 A 379 SER GLU GLU TYR ALA ARG GLU TYR GLU GLU ALA PHE ASN SEQRES 18 A 379 ILE ASP ASP ASP GLU LEU LYS MET ASP ASP TYR ALA ARG SEQRES 19 A 379 MET ILE THR GLY GLN TYR ASP ALA ASN SER ARG GLU VAL SEQRES 20 A 379 ASN SER PRO ALA ASN GLN GLY ILE VAL PHE LEU ASP THR SEQRES 21 A 379 ASP ALA ILE VAL THR ARG VAL TYR ALA LYS LEU TYR LEU SEQRES 22 A 379 PRO LYS GLU ASP PHE GLU GLN LEU GLU PRO LEU PHE ARG SEQRES 23 A 379 LYS THR ILE ALA ASP GLU ARG MET ASP LEU ILE LEU VAL SEQRES 24 A 379 ILE PRO PRO ILE THR GLU TYR ILE ASP ASP GLY PHE ARG SEQRES 25 A 379 HIS MET GLU TRP GLU GLU SER ARG HIS GLU PHE HIS GLU SEQRES 26 A 379 GLU LEU MET ARG GLN LEU ALA GLU PHE GLY LEU LEU ASP SEQRES 27 A 379 LYS VAL VAL ILE LEU ASP ASP GLU GLY ASP HIS ARG ASP SEQRES 28 A 379 GLN GLU GLY TYR LEU THR ARG TYR HIS HIS ALA ILE ASP SEQRES 29 A 379 ALA VAL HIS GLU TYR THR GLY VAL LYS ILE GLU ARG LEU SEQRES 30 A 379 SER TYR SEQRES 1 B 379 MET LEU THR ASN ASN ILE SER LYS SER LYS LEU SER GLY SEQRES 2 B 379 LYS ASN ILE GLY ILE TYR PHE GLY THR PHE ALA PRO LEU SEQRES 3 B 379 HIS THR GLY HIS GLN GLN GLN ILE TYR LYS CYS ALA SER SEQRES 4 B 379 LEU ASN ASP GLY VAL LEU LEU VAL VAL SER GLY TYR ASP SEQRES 5 B 379 ASN ASP ARG GLY ALA GLN ILE GLY LEU PRO LEU GLU LYS SEQRES 6 B 379 ARG PHE ARG TYR LEU ARG GLU ALA PHE ASN ASP GLU GLU SEQRES 7 B 379 ASN ILE LYS VAL SER MET LEU ASN GLU ASN ASP LEU PRO SEQRES 8 B 379 GLU MET PRO ASN GLY TRP ASP GLU TRP ALA ASN ARG LEU SEQRES 9 B 379 PHE GLU LEU ILE HIS HIS ASN THR LEU GLU ASN ASP LEU SEQRES 10 B 379 SER VAL THR PHE TYR VAL GLY GLU LEU GLU TYR ALA ALA SEQRES 11 B 379 GLU LEU LYS LYS ARG PHE PRO ALA ASP GLY ASN GLN TYR SEQRES 12 B 379 ALA VAL GLU ILE ALA ASP ARG HIS ASP ILE SER LEU SER SEQRES 13 B 379 ALA THR GLN ILE ARG GLU ASN PRO GLN GLU HIS TRP THR SEQRES 14 B 379 HIS ILE ASN ARG VAL PHE ARG ARG HIS PHE SER LYS VAL SEQRES 15 B 379 VAL THR VAL MET GLY SER ALA SER THR GLY LYS THR THR SEQRES 16 B 379 LEU VAL ARG ARG LEU ALA ARG SER ILE ASN ALA PRO PHE SEQRES 17 B 379 SER GLU GLU TYR ALA ARG GLU TYR GLU GLU ALA PHE ASN SEQRES 18 B 379 ILE ASP ASP ASP GLU LEU LYS MET ASP ASP TYR ALA ARG SEQRES 19 B 379 MET ILE THR GLY GLN TYR ASP ALA ASN SER ARG GLU VAL SEQRES 20 B 379 ASN SER PRO ALA ASN GLN GLY ILE VAL PHE LEU ASP THR SEQRES 21 B 379 ASP ALA ILE VAL THR ARG VAL TYR ALA LYS LEU TYR LEU SEQRES 22 B 379 PRO LYS GLU ASP PHE GLU GLN LEU GLU PRO LEU PHE ARG SEQRES 23 B 379 LYS THR ILE ALA ASP GLU ARG MET ASP LEU ILE LEU VAL SEQRES 24 B 379 ILE PRO PRO ILE THR GLU TYR ILE ASP ASP GLY PHE ARG SEQRES 25 B 379 HIS MET GLU TRP GLU GLU SER ARG HIS GLU PHE HIS GLU SEQRES 26 B 379 GLU LEU MET ARG GLN LEU ALA GLU PHE GLY LEU LEU ASP SEQRES 27 B 379 LYS VAL VAL ILE LEU ASP ASP GLU GLY ASP HIS ARG ASP SEQRES 28 B 379 GLN GLU GLY TYR LEU THR ARG TYR HIS HIS ALA ILE ASP SEQRES 29 B 379 ALA VAL HIS GLU TYR THR GLY VAL LYS ILE GLU ARG LEU SEQRES 30 B 379 SER TYR HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET NNR A 407 18 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET NNR B 407 18 HETNAM SO4 SULFATE ION HETNAM NNR NICOTINAMIDE RIBOSIDE HETSYN NNR 3-(AMINOCARBONYL)-1-BETA-D-RIBOFURANOSYLPYRIDINIUM FORMUL 3 SO4 12(O4 S 2-) FORMUL 9 NNR 2(C11 H15 N2 O5 1+) FORMUL 17 HOH *266(H2 O) HELIX 1 AA1 HIS A 27 ASN A 41 1 15 HELIX 2 AA2 ASP A 54 ILE A 59 1 6 HELIX 3 AA3 PRO A 62 PHE A 74 1 13 HELIX 4 AA4 PRO A 94 ASN A 111 1 18 HELIX 5 AA5 GLU A 125 LYS A 134 1 10 HELIX 6 AA6 ARG A 150 ASN A 163 1 14 HELIX 7 AA7 PRO A 164 ILE A 171 5 8 HELIX 8 AA8 ASN A 172 VAL A 174 5 3 HELIX 9 AA9 PHE A 175 SER A 180 1 6 HELIX 10 AB1 GLY A 192 ILE A 204 1 13 HELIX 11 AB2 GLU A 211 ASN A 221 1 11 HELIX 12 AB3 ASP A 223 LEU A 227 5 5 HELIX 13 AB4 LYS A 228 ASN A 248 1 21 HELIX 14 AB5 ASP A 261 LEU A 273 1 13 HELIX 15 AB6 PRO A 274 ASP A 291 1 18 HELIX 16 AB7 SER A 319 PHE A 334 1 16 HELIX 17 AB8 LEU A 336 ASP A 338 5 3 HELIX 18 AB9 THR A 357 GLY A 371 1 15 HELIX 19 AC1 HIS B 27 ASN B 41 1 15 HELIX 20 AC2 ASP B 54 ILE B 59 1 6 HELIX 21 AC3 PRO B 62 PHE B 74 1 13 HELIX 22 AC4 GLY B 96 ASN B 111 1 16 HELIX 23 AC5 GLU B 125 LYS B 134 1 10 HELIX 24 AC6 ARG B 150 ASN B 163 1 14 HELIX 25 AC7 PRO B 164 ILE B 171 5 8 HELIX 26 AC8 ASN B 172 VAL B 174 5 3 HELIX 27 AC9 PHE B 175 SER B 180 1 6 HELIX 28 AD1 GLY B 192 ILE B 204 1 13 HELIX 29 AD2 GLU B 211 ASN B 221 1 11 HELIX 30 AD3 ASP B 223 LEU B 227 5 5 HELIX 31 AD4 LYS B 228 ASN B 248 1 21 HELIX 32 AD5 ASP B 261 LEU B 273 1 13 HELIX 33 AD6 PRO B 274 ASP B 291 1 18 HELIX 34 AD7 HIS B 313 GLU B 318 1 6 HELIX 35 AD8 SER B 319 PHE B 334 1 16 HELIX 36 AD9 LEU B 336 ASP B 338 5 3 HELIX 37 AE1 THR B 357 GLY B 371 1 15 SHEET 1 AA1 5 ILE A 80 ASN A 86 0 SHEET 2 AA1 5 GLY A 43 GLY A 50 1 N LEU A 46 O LYS A 81 SHEET 3 AA1 5 ASN A 15 GLY A 21 1 N TYR A 19 O VAL A 47 SHEET 4 AA1 5 SER A 118 VAL A 123 1 O THR A 120 N ILE A 18 SHEET 5 AA1 5 GLN A 142 ILE A 147 1 O GLU A 146 N PHE A 121 SHEET 1 AA2 4 ILE A 255 ASP A 259 0 SHEET 2 AA2 4 LYS A 181 GLY A 187 1 N VAL A 185 O LEU A 258 SHEET 3 AA2 4 LEU A 296 ILE A 300 1 O LEU A 298 N MET A 186 SHEET 4 AA2 4 VAL A 340 ILE A 342 1 O VAL A 341 N ILE A 297 SHEET 1 AA3 5 ILE B 80 ASN B 86 0 SHEET 2 AA3 5 GLY B 43 GLY B 50 1 N LEU B 46 O LYS B 81 SHEET 3 AA3 5 ASN B 15 GLY B 21 1 N TYR B 19 O VAL B 47 SHEET 4 AA3 5 SER B 118 VAL B 123 1 O THR B 120 N ILE B 18 SHEET 5 AA3 5 GLN B 142 ILE B 147 1 O GLU B 146 N PHE B 121 SHEET 1 AA4 4 ILE B 255 ASP B 259 0 SHEET 2 AA4 4 LYS B 181 GLY B 187 1 N VAL B 183 O LEU B 258 SHEET 3 AA4 4 LEU B 296 ILE B 300 1 O LEU B 298 N MET B 186 SHEET 4 AA4 4 VAL B 340 ILE B 342 1 O VAL B 341 N ILE B 297 CISPEP 1 ALA A 24 PRO A 25 0 5.13 CISPEP 2 ALA B 24 PRO B 25 0 3.69 CISPEP 3 MET B 93 PRO B 94 0 5.31 SITE 1 AC1 5 ARG A 376 LEU A 377 SER A 378 HOH A 505 SITE 2 AC1 5 LYS B 36 SITE 1 AC2 6 LYS A 65 TYR A 69 ARG A 177 HIS A 178 SITE 2 AC2 6 HOH A 502 HOH A 561 SITE 1 AC3 6 GLY A 21 THR A 22 PHE A 23 HIS A 30 SITE 2 AC3 6 ARG A 150 HOH A 517 SITE 1 AC4 7 SER A 190 THR A 191 GLY A 192 LYS A 193 SITE 2 AC4 7 THR A 194 ARG A 214 HOH A 526 SITE 1 AC5 4 VAL A 372 LYS A 373 HIS B 170 SO4 B 405 SITE 1 AC6 3 ARG A 55 THR A 158 ARG A 161 SITE 1 AC7 8 ARG A 177 TYR A 240 ASN A 243 SER A 244 SITE 2 AC7 8 ASN A 248 LEU A 258 ASP A 291 ARG A 293 SITE 1 AC8 8 SER B 190 THR B 191 GLY B 192 LYS B 193 SITE 2 AC8 8 THR B 194 ARG B 214 HOH B 506 HOH B 569 SITE 1 AC9 5 LYS B 65 TYR B 69 HIS B 178 HOH B 524 SITE 2 AC9 5 HOH B 554 SITE 1 AD1 7 THR B 22 PHE B 23 HIS B 30 ARG B 150 SITE 2 AD1 7 SER B 154 HOH B 501 HOH B 502 SITE 1 AD2 4 GLY B 124 GLU B 125 TYR B 128 ARG B 150 SITE 1 AD3 5 SO4 A 405 HIS B 167 HIS B 170 HOH B 503 SITE 2 AD3 5 HOH B 504 SITE 1 AD4 4 GLU A 375 THR B 28 GLN B 32 HIS B 170 SITE 1 AD5 9 ARG B 177 TYR B 240 ASN B 243 SER B 244 SITE 2 AD5 9 ASN B 248 LEU B 258 ASP B 291 GLU B 292 SITE 3 AD5 9 ARG B 293 CRYST1 165.140 165.140 196.550 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006055 0.003496 0.000000 0.00000 SCALE2 0.000000 0.006992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005088 0.00000