HEADER TRANSPORT PROTEIN 29-JUN-18 6GYF TITLE CRYSTAL STRUCTURE OF NADR PROTEIN IN COMPLEX WITH NR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE NADR FAMILY / COMPND 3 RIBOSYLNICOTINAMIDE KINASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS CREMORIS; SOURCE 4 ORGANISM_TAXID: 1359; SOURCE 5 GENE: NCDO763_1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1211845 KEYWDS VITAMIN TRANSPORT, PHOSPHORYLATION, NAD+, NADR, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SINGH,A.STETSENKO,M.JAEHME,A.GUSKOV,D.J.SLOTBOOM REVDAT 3 17-JAN-24 6GYF 1 REMARK REVDAT 2 22-JUL-20 6GYF 1 JRNL REVDAT 1 10-JUL-19 6GYF 0 JRNL AUTH A.STETSENKO,R.SINGH,M.JAEHME,A.GUSKOV,D.J.SLOTBOOM JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF NADR JRNL TITL 2 FROMLACTOCOCCUS LACTIS. JRNL REF MOLECULES V. 25 2020 JRNL REFN ESSN 1420-3049 JRNL PMID 32331317 JRNL DOI 10.3390/MOLECULES25081940 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3150) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 41577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8343 - 6.6537 0.93 2771 147 0.1728 0.1885 REMARK 3 2 6.6537 - 5.2834 0.95 2676 141 0.1804 0.2199 REMARK 3 3 5.2834 - 4.6162 0.95 2633 138 0.1353 0.1953 REMARK 3 4 4.6162 - 4.1944 0.96 2644 139 0.1298 0.1717 REMARK 3 5 4.1944 - 3.8939 0.96 2631 139 0.1490 0.1916 REMARK 3 6 3.8939 - 3.6644 0.97 2617 138 0.1717 0.2336 REMARK 3 7 3.6644 - 3.4810 0.97 2627 138 0.2027 0.2366 REMARK 3 8 3.4810 - 3.3295 0.97 2634 138 0.2250 0.3118 REMARK 3 9 3.3295 - 3.2013 0.96 2610 138 0.2752 0.3637 REMARK 3 10 3.2013 - 3.0909 0.97 2617 138 0.2945 0.3288 REMARK 3 11 3.0909 - 2.9942 0.97 2616 137 0.2999 0.3726 REMARK 3 12 2.9942 - 2.9087 0.98 2628 139 0.3196 0.3553 REMARK 3 13 2.9087 - 2.8321 0.98 2608 137 0.3414 0.3791 REMARK 3 14 2.8321 - 2.7630 0.98 2603 137 0.3871 0.3930 REMARK 3 15 2.7630 - 2.7002 0.96 2582 136 0.4161 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6245 REMARK 3 ANGLE : 1.054 8472 REMARK 3 CHIRALITY : 0.057 897 REMARK 3 PLANARITY : 0.006 1121 REMARK 3 DIHEDRAL : 19.067 3713 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0645 44.0332 22.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.6770 T22: 0.7748 REMARK 3 T33: 0.5819 T12: -0.1537 REMARK 3 T13: -0.1549 T23: 0.0990 REMARK 3 L TENSOR REMARK 3 L11: 1.1641 L22: 3.4286 REMARK 3 L33: 0.8874 L12: -1.1606 REMARK 3 L13: 0.4206 L23: -0.5563 REMARK 3 S TENSOR REMARK 3 S11: 0.1497 S12: -0.2323 S13: -0.3615 REMARK 3 S21: 0.2198 S22: 0.0819 S23: 0.3114 REMARK 3 S31: 0.2551 S32: -0.2824 S33: -0.2625 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1567 73.5285 24.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.7362 T22: 0.7450 REMARK 3 T33: 0.4718 T12: 0.0371 REMARK 3 T13: 0.0099 T23: -0.1498 REMARK 3 L TENSOR REMARK 3 L11: 7.1378 L22: 2.3082 REMARK 3 L33: 1.9434 L12: 0.1913 REMARK 3 L13: 0.7333 L23: -0.2767 REMARK 3 S TENSOR REMARK 3 S11: -0.1963 S12: -0.9885 S13: 0.7004 REMARK 3 S21: 0.3037 S22: 0.0636 S23: -0.0383 REMARK 3 S31: -0.4267 S32: -0.5487 S33: 0.1675 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9798 72.5306 14.2148 REMARK 3 T TENSOR REMARK 3 T11: 0.4441 T22: 0.4925 REMARK 3 T33: 0.4388 T12: -0.0248 REMARK 3 T13: -0.1603 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.5097 L22: 5.2424 REMARK 3 L33: 3.0944 L12: -0.7939 REMARK 3 L13: -2.6496 L23: 2.4633 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.0261 S13: 0.1127 REMARK 3 S21: -0.2803 S22: 0.0318 S23: 0.0359 REMARK 3 S31: -0.0289 S32: -0.0747 S33: -0.0388 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5009 76.4898 11.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.5469 T22: 0.4006 REMARK 3 T33: 0.3190 T12: 0.0225 REMARK 3 T13: -0.0499 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 7.9348 L22: 7.0654 REMARK 3 L33: 5.0076 L12: 2.9451 REMARK 3 L13: -0.3602 L23: 2.9718 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: -0.6258 S13: 0.5436 REMARK 3 S21: -0.3334 S22: -0.0640 S23: -0.2792 REMARK 3 S31: -0.2083 S32: 0.0064 S33: -0.0513 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8090 86.3308 17.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.6543 T22: 0.4148 REMARK 3 T33: 0.6153 T12: -0.0516 REMARK 3 T13: 0.0031 T23: -0.1099 REMARK 3 L TENSOR REMARK 3 L11: 5.5849 L22: 5.7816 REMARK 3 L33: 5.3307 L12: 0.4705 REMARK 3 L13: -0.0886 L23: 0.9087 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.1997 S13: 0.9967 REMARK 3 S21: -0.5207 S22: 0.0670 S23: -0.1758 REMARK 3 S31: -0.0762 S32: -0.0303 S33: -0.0999 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7063 59.0754 20.7771 REMARK 3 T TENSOR REMARK 3 T11: 0.7476 T22: 0.6032 REMARK 3 T33: 0.5281 T12: 0.0080 REMARK 3 T13: -0.0541 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 8.2697 L22: 2.6596 REMARK 3 L33: 6.6473 L12: 0.6278 REMARK 3 L13: -0.7236 L23: 1.5391 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: -0.5055 S13: -0.3709 REMARK 3 S21: 0.3600 S22: 0.4575 S23: -0.2765 REMARK 3 S31: 0.8134 S32: 0.3326 S33: -0.3115 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3947 35.7577 10.5040 REMARK 3 T TENSOR REMARK 3 T11: 0.6829 T22: 0.5778 REMARK 3 T33: 0.5629 T12: 0.0058 REMARK 3 T13: -0.2639 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 4.7793 L22: 4.5329 REMARK 3 L33: 3.3200 L12: -0.1256 REMARK 3 L13: -1.7579 L23: -0.3991 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.4396 S13: -0.5607 REMARK 3 S21: -0.1588 S22: 0.1910 S23: 0.3681 REMARK 3 S31: 0.6490 S32: -0.0391 S33: -0.2348 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4636 36.3821 -5.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.8170 T22: 0.8398 REMARK 3 T33: 0.6404 T12: 0.0976 REMARK 3 T13: -0.2584 T23: -0.1499 REMARK 3 L TENSOR REMARK 3 L11: 0.3904 L22: 2.6050 REMARK 3 L33: 8.2210 L12: 0.7448 REMARK 3 L13: 1.6982 L23: 4.4350 REMARK 3 S TENSOR REMARK 3 S11: 0.3877 S12: 0.1779 S13: -0.7633 REMARK 3 S21: 0.1953 S22: -0.1318 S23: -0.0290 REMARK 3 S31: 1.1766 S32: -0.0197 S33: -0.1786 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3751 37.5652 -1.0349 REMARK 3 T TENSOR REMARK 3 T11: 0.5087 T22: 0.6465 REMARK 3 T33: 0.5561 T12: 0.0580 REMARK 3 T13: -0.1722 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.4619 L22: 2.9278 REMARK 3 L33: 5.9788 L12: -0.8594 REMARK 3 L13: -1.8985 L23: 1.0591 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: 0.3913 S13: -0.3443 REMARK 3 S21: 0.0443 S22: 0.0210 S23: -0.3339 REMARK 3 S31: 0.5229 S32: 0.2140 S33: -0.1722 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9900 30.4890 20.4182 REMARK 3 T TENSOR REMARK 3 T11: 0.9053 T22: 0.8015 REMARK 3 T33: 0.9052 T12: 0.0780 REMARK 3 T13: -0.4152 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.0314 L22: 3.0067 REMARK 3 L33: 9.7391 L12: 2.8037 REMARK 3 L13: -0.7603 L23: -0.9068 REMARK 3 S TENSOR REMARK 3 S11: -0.4163 S12: -0.6476 S13: -0.3659 REMARK 3 S21: 1.1169 S22: 0.4927 S23: -1.0469 REMARK 3 S31: 0.2329 S32: 0.5066 S33: -0.0698 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.827 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GYE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M (NH4)2SO4, 100MM NA CITRATE PH 6.5, REMARK 280 10MM MGCL2 AND 10% GLUCOSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.35000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.70000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.35000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.70000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.35000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 128.70000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.35000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 91 REMARK 465 GLU A 92 REMARK 465 MET A 93 REMARK 465 PRO A 94 REMARK 465 ASN A 95 REMARK 465 HIS A 349 REMARK 465 ARG A 350 REMARK 465 ASP A 351 REMARK 465 GLN A 352 REMARK 465 GLU A 353 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 SER B 7 REMARK 465 TYR B 306 REMARK 465 ILE B 307 REMARK 465 ASP B 308 REMARK 465 ASP B 309 REMARK 465 GLY B 310 REMARK 465 TYR B 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 346 CG CD OE1 OE2 REMARK 470 ASP B 348 CG OD1 OD2 REMARK 470 HIS B 349 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 350 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 351 CG OD1 OD2 REMARK 470 GLN B 352 CG CD OE1 NE2 REMARK 470 GLU B 353 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 79.78 69.49 REMARK 500 ASN A 163 86.41 -152.05 REMARK 500 THR A 260 170.05 71.42 REMARK 500 TYR A 306 75.99 66.70 REMARK 500 ASP A 308 80.63 50.32 REMARK 500 GLU A 318 -36.17 68.30 REMARK 500 SER A 319 52.73 -107.26 REMARK 500 ASP A 345 -163.81 -126.06 REMARK 500 GLU A 346 73.34 55.10 REMARK 500 GLU B 92 -145.67 56.10 REMARK 500 ASN B 163 88.33 -153.32 REMARK 500 THR B 260 167.40 69.31 REMARK 500 HIS B 313 97.69 -69.78 REMARK 500 ASP B 345 -152.87 -131.44 REMARK 500 ASP B 348 106.99 -51.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GYE RELATED DB: PDB REMARK 900 WITH NR DBREF1 6GYF A 1 379 UNP A0A165F602_LACLC DBREF2 6GYF A A0A165F602 1 379 DBREF1 6GYF B 1 379 UNP A0A165F602_LACLC DBREF2 6GYF B A0A165F602 1 379 SEQRES 1 A 379 MET LEU THR ASN ASN ILE SER LYS SER LYS LEU SER GLY SEQRES 2 A 379 LYS ASN ILE GLY ILE TYR PHE GLY THR PHE ALA PRO LEU SEQRES 3 A 379 HIS THR GLY HIS GLN GLN GLN ILE TYR LYS CYS ALA SER SEQRES 4 A 379 LEU ASN ASP GLY VAL LEU LEU VAL VAL SER GLY TYR ASP SEQRES 5 A 379 ASN ASP ARG GLY ALA GLN ILE GLY LEU PRO LEU GLU LYS SEQRES 6 A 379 ARG PHE ARG TYR LEU ARG GLU ALA PHE ASN ASP GLU GLU SEQRES 7 A 379 ASN ILE LYS VAL SER MET LEU ASN GLU ASN ASP LEU PRO SEQRES 8 A 379 GLU MET PRO ASN GLY TRP ASP GLU TRP ALA ASN ARG LEU SEQRES 9 A 379 PHE GLU LEU ILE HIS HIS ASN THR LEU GLU ASN ASP LEU SEQRES 10 A 379 SER VAL THR PHE TYR VAL GLY GLU LEU GLU TYR ALA ALA SEQRES 11 A 379 GLU LEU LYS LYS ARG PHE PRO ALA ASP GLY ASN GLN TYR SEQRES 12 A 379 ALA VAL GLU ILE ALA ASP ARG HIS ASP ILE SER LEU SER SEQRES 13 A 379 ALA THR GLN ILE ARG GLU ASN PRO GLN GLU HIS TRP THR SEQRES 14 A 379 HIS ILE ASN ARG VAL PHE ARG ARG HIS PHE SER LYS VAL SEQRES 15 A 379 VAL THR VAL MET GLY SER ALA SER THR GLY LYS THR THR SEQRES 16 A 379 LEU VAL ARG ARG LEU ALA ARG SER ILE ASN ALA PRO PHE SEQRES 17 A 379 SER GLU GLU TYR ALA ARG GLU TYR GLU GLU ALA PHE ASN SEQRES 18 A 379 ILE ASP ASP ASP GLU LEU LYS MET ASP ASP TYR ALA ARG SEQRES 19 A 379 MET ILE THR GLY GLN TYR ASP ALA ASN SER ARG GLU VAL SEQRES 20 A 379 ASN SER PRO ALA ASN GLN GLY ILE VAL PHE LEU ASP THR SEQRES 21 A 379 ASP ALA ILE VAL THR ARG VAL TYR ALA LYS LEU TYR LEU SEQRES 22 A 379 PRO LYS GLU ASP PHE GLU GLN LEU GLU PRO LEU PHE ARG SEQRES 23 A 379 LYS THR ILE ALA ASP GLU ARG MET ASP LEU ILE LEU VAL SEQRES 24 A 379 ILE PRO PRO ILE THR GLU TYR ILE ASP ASP GLY PHE ARG SEQRES 25 A 379 HIS MET GLU TRP GLU GLU SER ARG HIS GLU PHE HIS GLU SEQRES 26 A 379 GLU LEU MET ARG GLN LEU ALA GLU PHE GLY LEU LEU ASP SEQRES 27 A 379 LYS VAL VAL ILE LEU ASP ASP GLU GLY ASP HIS ARG ASP SEQRES 28 A 379 GLN GLU GLY TYR LEU THR ARG TYR HIS HIS ALA ILE ASP SEQRES 29 A 379 ALA VAL HIS GLU TYR THR GLY VAL LYS ILE GLU ARG LEU SEQRES 30 A 379 SER TYR SEQRES 1 B 379 MET LEU THR ASN ASN ILE SER LYS SER LYS LEU SER GLY SEQRES 2 B 379 LYS ASN ILE GLY ILE TYR PHE GLY THR PHE ALA PRO LEU SEQRES 3 B 379 HIS THR GLY HIS GLN GLN GLN ILE TYR LYS CYS ALA SER SEQRES 4 B 379 LEU ASN ASP GLY VAL LEU LEU VAL VAL SER GLY TYR ASP SEQRES 5 B 379 ASN ASP ARG GLY ALA GLN ILE GLY LEU PRO LEU GLU LYS SEQRES 6 B 379 ARG PHE ARG TYR LEU ARG GLU ALA PHE ASN ASP GLU GLU SEQRES 7 B 379 ASN ILE LYS VAL SER MET LEU ASN GLU ASN ASP LEU PRO SEQRES 8 B 379 GLU MET PRO ASN GLY TRP ASP GLU TRP ALA ASN ARG LEU SEQRES 9 B 379 PHE GLU LEU ILE HIS HIS ASN THR LEU GLU ASN ASP LEU SEQRES 10 B 379 SER VAL THR PHE TYR VAL GLY GLU LEU GLU TYR ALA ALA SEQRES 11 B 379 GLU LEU LYS LYS ARG PHE PRO ALA ASP GLY ASN GLN TYR SEQRES 12 B 379 ALA VAL GLU ILE ALA ASP ARG HIS ASP ILE SER LEU SER SEQRES 13 B 379 ALA THR GLN ILE ARG GLU ASN PRO GLN GLU HIS TRP THR SEQRES 14 B 379 HIS ILE ASN ARG VAL PHE ARG ARG HIS PHE SER LYS VAL SEQRES 15 B 379 VAL THR VAL MET GLY SER ALA SER THR GLY LYS THR THR SEQRES 16 B 379 LEU VAL ARG ARG LEU ALA ARG SER ILE ASN ALA PRO PHE SEQRES 17 B 379 SER GLU GLU TYR ALA ARG GLU TYR GLU GLU ALA PHE ASN SEQRES 18 B 379 ILE ASP ASP ASP GLU LEU LYS MET ASP ASP TYR ALA ARG SEQRES 19 B 379 MET ILE THR GLY GLN TYR ASP ALA ASN SER ARG GLU VAL SEQRES 20 B 379 ASN SER PRO ALA ASN GLN GLY ILE VAL PHE LEU ASP THR SEQRES 21 B 379 ASP ALA ILE VAL THR ARG VAL TYR ALA LYS LEU TYR LEU SEQRES 22 B 379 PRO LYS GLU ASP PHE GLU GLN LEU GLU PRO LEU PHE ARG SEQRES 23 B 379 LYS THR ILE ALA ASP GLU ARG MET ASP LEU ILE LEU VAL SEQRES 24 B 379 ILE PRO PRO ILE THR GLU TYR ILE ASP ASP GLY PHE ARG SEQRES 25 B 379 HIS MET GLU TRP GLU GLU SER ARG HIS GLU PHE HIS GLU SEQRES 26 B 379 GLU LEU MET ARG GLN LEU ALA GLU PHE GLY LEU LEU ASP SEQRES 27 B 379 LYS VAL VAL ILE LEU ASP ASP GLU GLY ASP HIS ARG ASP SEQRES 28 B 379 GLN GLU GLY TYR LEU THR ARG TYR HIS HIS ALA ILE ASP SEQRES 29 B 379 ALA VAL HIS GLU TYR THR GLY VAL LYS ILE GLU ARG LEU SEQRES 30 B 379 SER TYR HET NMN A 401 22 HET SO4 A 402 5 HET SO4 A 403 5 HET MG A 404 1 HET MG A 405 1 HET NMN B 401 22 HET SO4 B 402 5 HET SO4 B 403 5 HET MG B 404 1 HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 3 NMN 2(C11 H16 N2 O8 P 1+) FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 MG 3(MG 2+) HELIX 1 AA1 HIS A 27 ASN A 41 1 15 HELIX 2 AA2 GLY A 56 GLY A 60 5 5 HELIX 3 AA3 PRO A 62 PHE A 74 1 13 HELIX 4 AA4 TRP A 97 THR A 112 1 16 HELIX 5 AA5 GLU A 125 LYS A 134 1 10 HELIX 6 AA6 ARG A 150 ASN A 163 1 14 HELIX 7 AA7 PRO A 164 ILE A 171 5 8 HELIX 8 AA8 ASN A 172 SER A 180 1 9 HELIX 9 AA9 GLY A 192 ILE A 204 1 13 HELIX 10 AB1 GLU A 211 ASN A 221 1 11 HELIX 11 AB2 ASP A 223 LEU A 227 5 5 HELIX 12 AB3 LYS A 228 ASN A 248 1 21 HELIX 13 AB4 ASP A 261 LEU A 273 1 13 HELIX 14 AB5 PRO A 274 ASP A 291 1 18 HELIX 15 AB6 SER A 319 PHE A 334 1 16 HELIX 16 AB7 LEU A 336 ASP A 338 5 3 HELIX 17 AB8 THR A 357 GLY A 371 1 15 HELIX 18 AB9 HIS B 27 ASN B 41 1 15 HELIX 19 AC1 GLY B 56 GLY B 60 5 5 HELIX 20 AC2 PRO B 62 PHE B 74 1 13 HELIX 21 AC3 GLY B 96 THR B 112 1 17 HELIX 22 AC4 GLU B 125 LYS B 134 1 10 HELIX 23 AC5 ARG B 150 ASN B 163 1 14 HELIX 24 AC6 HIS B 167 ILE B 171 5 5 HELIX 25 AC7 ASN B 172 SER B 180 1 9 HELIX 26 AC8 GLY B 192 ILE B 204 1 13 HELIX 27 AC9 GLU B 211 ASN B 221 1 11 HELIX 28 AD1 ASP B 223 LEU B 227 5 5 HELIX 29 AD2 LYS B 228 ASN B 248 1 21 HELIX 30 AD3 ASP B 261 LEU B 273 1 13 HELIX 31 AD4 PRO B 274 ASP B 291 1 18 HELIX 32 AD5 SER B 319 PHE B 334 1 16 HELIX 33 AD6 LEU B 336 ASP B 338 5 3 HELIX 34 AD7 THR B 357 GLY B 371 1 15 SHEET 1 AA1 5 ILE A 80 ASN A 86 0 SHEET 2 AA1 5 GLY A 43 GLY A 50 1 N LEU A 46 O LYS A 81 SHEET 3 AA1 5 ASN A 15 GLY A 21 1 N GLY A 17 O GLY A 43 SHEET 4 AA1 5 SER A 118 VAL A 123 1 O THR A 120 N ILE A 18 SHEET 5 AA1 5 GLN A 142 ILE A 147 1 O GLU A 146 N PHE A 121 SHEET 1 AA2 4 ILE A 255 ASP A 259 0 SHEET 2 AA2 4 LYS A 181 MET A 186 1 N VAL A 185 O LEU A 258 SHEET 3 AA2 4 LEU A 296 VAL A 299 1 O LEU A 298 N MET A 186 SHEET 4 AA2 4 VAL A 340 ILE A 342 1 O VAL A 341 N VAL A 299 SHEET 1 AA3 5 ILE B 80 ASN B 86 0 SHEET 2 AA3 5 GLY B 43 GLY B 50 1 N VAL B 48 O LEU B 85 SHEET 3 AA3 5 ASN B 15 GLY B 21 1 N GLY B 17 O LEU B 45 SHEET 4 AA3 5 SER B 118 VAL B 123 1 O THR B 120 N ILE B 18 SHEET 5 AA3 5 GLN B 142 ILE B 147 1 O ALA B 144 N PHE B 121 SHEET 1 AA4 4 ILE B 255 ASP B 259 0 SHEET 2 AA4 4 LYS B 181 MET B 186 1 N VAL B 185 O LEU B 258 SHEET 3 AA4 4 LEU B 296 VAL B 299 1 O LEU B 298 N MET B 186 SHEET 4 AA4 4 VAL B 340 ILE B 342 1 O VAL B 341 N VAL B 299 CISPEP 1 ALA A 24 PRO A 25 0 4.04 CISPEP 2 ALA B 24 PRO B 25 0 5.21 SITE 1 AC1 10 LYS A 65 TYR A 69 ARG A 177 HIS A 178 SITE 2 AC1 10 TYR A 240 ASN A 243 SER A 244 ASN A 248 SITE 3 AC1 10 LEU A 258 ARG A 293 SITE 1 AC2 6 GLY A 21 THR A 22 PHE A 23 HIS A 30 SITE 2 AC2 6 ARG A 150 SER A 154 SITE 1 AC3 8 ALA A 189 SER A 190 THR A 191 GLY A 192 SITE 2 AC3 8 LYS A 193 THR A 194 ARG A 214 ASP A 309 SITE 1 AC4 3 ARG A 266 ARG A 329 GLU A 333 SITE 1 AC5 2 GLU A 72 ARG A 177 SITE 1 AC6 11 LYS B 65 TYR B 69 ARG B 177 HIS B 178 SITE 2 AC6 11 TYR B 240 ASN B 243 SER B 244 ASN B 248 SITE 3 AC6 11 LEU B 258 GLU B 292 ARG B 293 SITE 1 AC7 7 GLY B 21 THR B 22 PHE B 23 HIS B 30 SITE 2 AC7 7 ARG B 150 ILE B 153 SER B 154 SITE 1 AC8 8 SER B 188 ALA B 189 SER B 190 THR B 191 SITE 2 AC8 8 GLY B 192 LYS B 193 THR B 194 ARG B 214 SITE 1 AC9 3 ARG B 266 LYS B 270 GLU B 333 CRYST1 165.090 165.090 193.050 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006057 0.003497 0.000000 0.00000 SCALE2 0.000000 0.006994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005180 0.00000